Clone BS06030 Report

Search the DGRC for BS06030

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG3795-RA
Protein status:BS06030.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06030.3prime Sequence

879 bp (806 high quality bases) assembled on 2005-12-03

> BS06030.3prime
ATGGTCTAGAAAGCTTCTAGGATATCCCAGTGAGCAGGAGCAGCAGCAGC
AGAAACAGCGTCCACACGGACCGTGTGCCTAGGGGGCAGGAGTTCTCGGT
GATCCAATCCCGGAAGTGGTAGACATCGGTGTAGATCCCAGCCGAATCAG
GCTCGCCGCAACCCATTCCGAAGGACACGATGCCCGTCACCATGTTGTCA
CAGATGAGGGGCCCGCCCGAGTCGCCCTGGCAGCTGTCCACATCGGAGTC
GTGCTTGTCATTGGCGCAGAGCATGCCAGCGTTGGACCAGCCCAGCAGCT
TCTCGCAGAAGGTGTCCGGCAGGATCTGCATATCGCCGTTGATGGCCTCA
TCTGGCAGTGGTCCGAACTGAATGACCGTGCCCCAGCCGACGATGGAGCA
CGGGGCCCCGGCCACCGGAACCTTGTTGTACAGAGGTATTTTGGCAACGG
CATCACCCAGACTGAGATCCGCCTCCAACAGAATCAATCCTATGTCGTAC
TTCTGCGACTTGCCCTTCTTGTACTTGGGATGCGGCAATAGCTCCTCGGC
CTCAATAATCTGTGTTGTACTGCTCTTGAGCAGCCTCCTTGGCGTCCCGG
CAACGACCATCAACTTCTTGGCCTTCAGCTTTCGCCGATTGCTGAACATG
CAATGGGCCGCCGTGAGAATGGCCCGCTCGCTGAAGATCGTTCCCGCGCA
AAAGTGGTTATCGCCGAAGAACTTCTTCGGCTTGCCCATGCGCAGCGAAA
CCGTGTACTTGACCAGGTCGTTGGTATCCGGTCGATAGCCACCAGTGACC
AGGAACTGAAAGTCCGATGGTCGGTCCTGCCTCTGACTGGGCGCCGAATG
CAGCTGGCCCGCCTGTGATTCCGAGTTCG

BS06030.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-PA 918 CG3795-RA 56..918 879..17 4315 100 Minus
CG8279-PA 3396 Pde6-RA 9..35 26..52 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-RB 1247 CG3795-RB 102..964 879..17 4315 100 Minus
CG3795-RA 1115 CG3795-RA 102..964 879..17 4315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1709089..1709442 17..370 1770 100 Plus
X 23542271 X 1709505..1709775 368..638 1355 100 Plus
X 23542271 X 1709841..1710081 639..879 1205 100 Plus
Blast to na_te.dros performed 2015-02-10 22:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2344..2370 33..59 108 88.9 Plus

BS06030.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:59 Download gff for BS06030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-PA 56..918 17..879 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:53 Download gff for BS06030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-PA 56..918 17..879 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:45:33 Download gff for BS06030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 83..948 13..879 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:36 Download gff for BS06030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 102..967 13..879 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:36 Download gff for BS06030.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1709505..1709775 368..638 100 <- Plus
X 1709841..1710081 639..879 100   Plus
X 1709086..1709439 13..367 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:45:33 Download gff for BS06030.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1603119..1603472 13..367 99 <- Plus
arm_X 1603538..1603808 368..638 100 <- Plus
arm_X 1603874..1604114 639..879 100   Plus

BS06030.5prime Sequence

836 bp (796 high quality bases) assembled on 2005-12-03

> BS06030.5prime
GAAGTTATCAGTCGACATGTGTCCGTCAAAATTTGTTGTCTACATACTGC
TGATTTCCGTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTG
CATTCGGCGCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCT
GGTCACTGGTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGG
TTTCGCTGCGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTT
TGCGCGGGAACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTG
CATGTTCAGCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTG
CCGGGACGCCAAGGAGGCTGCTCAAGAGCAGTACAACACAGATTATTGAG
GCCGAGGAGCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAA
GTACGACATAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATG
CCGTTGCCAAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCG
TGCTCCATCGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGA
TGAGGCCATCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGA
AGCTGCTGGGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCAC
GACTCCGATGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTG
TGACAACATGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGCGAGC
CTGATTCGGCTGGGATCTACACCGATGTCTACCACT

BS06030.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-PA 918 CG3795-RA 1..820 17..836 4100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-RB 1247 CG3795-RB 47..866 17..836 4100 100 Plus
CG3795-RA 1115 CG3795-RA 47..866 17..836 4100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1709841..1710136 312..17 1480 100 Minus
X 23542271 X 1709505..1709775 583..313 1355 100 Minus
X 23542271 X 1709187..1709442 836..581 1280 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:24:53 has no hits.

BS06030.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:00 Download gff for BS06030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-PA 1..820 17..836 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:54 Download gff for BS06030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-PA 1..820 17..836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:33:40 Download gff for BS06030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 25..847 14..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:20 Download gff for BS06030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 44..866 14..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:20 Download gff for BS06030.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1709841..1710139 14..312 99   Minus
X 1709187..1709439 584..836 100 <- Minus
X 1709505..1709775 313..583 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:33:40 Download gff for BS06030.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1603220..1603472 584..836 100 <- Minus
arm_X 1603538..1603808 313..583 100 <- Minus
arm_X 1603874..1604172 14..312 99   Minus

BS06030.complete Sequence

950 bp (950 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635322

> BS06030.complete
GAAGTTATCAGTCGACATGTGTCCGTCAAAATTTGTTGTCTACATACTGC
TGATTTCCGTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTG
CATTCGGCGCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCT
GGTCACTGGTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGG
TTTCGCTGCGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTT
TGCGCGGGAACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTG
CATGTTCAGCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTG
CCGGGACGCCAAGGAGGCTGCTCAAGAGCAGTACAACACAGATTATTGAG
GCCGAGGAGCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAA
GTACGACATAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATG
CCGTTGCCAAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCG
TGCTCCATCGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGA
TGAGGCCATCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGA
AGCTGCTGGGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCAC
GACTCCGATGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTG
TGACAACATGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGCGAGC
CTGATTCGGCTGGGATCTACACCGATGTCTACCACTTCCGGGATTGGATC
ACCGAGAACTCCTGCCCCCTAGGCACACGGTCCGTGTGGACGCTGTTTCT
GCTGCTGCTGCTCCTGCTCACTGGGATATCCTAGAAGCTTTCTAGACCAT

BS06030.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-RB 918 CG3795-PB 1..918 17..934 4590 100 Plus
CG3795-RA 918 CG3795-PA 1..918 17..934 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-RB 1247 CG3795-RB 47..964 17..934 4590 100 Plus
CG3795-RA 1115 CG3795-RA 47..964 17..934 4590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1709089..1709442 934..581 1770 100 Minus
X 23542271 X 1709841..1710136 312..17 1480 100 Minus
X 23542271 X 1709505..1709775 583..313 1355 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:40:32 has no hits.

BS06030.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:59 Download gff for BS06030.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 1..918 17..934 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:59 Download gff for BS06030.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 25..948 14..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:07 Download gff for BS06030.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 28..945 17..934 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:59 Download gff for BS06030.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 25..948 14..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:53 Download gff for BS06030.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 47..964 17..934 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:53 Download gff for BS06030.complete
Subject Subject Range Query Range Percent Splice Strand
X 1709089..1709439 584..934 100 <- Minus
X 1709505..1709775 313..583 100 <- Minus
X 1709841..1710136 17..312 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:07 Download gff for BS06030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1603122..1603472 584..934 100 <- Minus
arm_X 1603538..1603808 313..583 100 <- Minus
arm_X 1603874..1604169 17..312 100   Minus

BS06030.pep Sequence

Translation from 16 to 933

> BS06030.pep
MCPSKFVVYILLISVSANSNSESQAGQLHSAPSQRQDRPSDFQFLVTGGY
RPDTNDLVKYTVSLRMGKPKKFFGDNHFCAGTIFSERAILTAAHCMFSNR
RKLKAKKLMVVAGTPRRLLKSSTTQIIEAEELLPHPKYKKGKSQKYDIGL
ILLEADLSLGDAVAKIPLYNKVPVAGAPCSIVGWGTVIQFGPLPDEAING
DMQILPDTFCEKLLGWSNAGMLCANDKHDSDVDSCQGDSGGPLICDNMVT
GIVSFGMGCGEPDSAGIYTDVYHFRDWITENSCPLGTRSVWTLFLLLLLL
LTGIS*

BS06030.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-PB 305 CG3795-PB 1..305 1..305 1613 100 Plus
CG3795-PA 305 CG3795-PA 1..305 1..305 1613 100 Plus
CG18223-PA 322 CG18223-PA 57..280 57..278 364 36.7 Plus
CG14780-PA 302 CG14780-PA 42..293 56..301 342 32.5 Plus
CG13527-PA 290 CG13527-PA 36..288 53..301 336 31.5 Plus