Clone Sequence Records
BS06030.3prime Sequence
879 bp (806 high quality bases) assembled on 2005-12-03
> BS06030.3prime
ATGGTCTAGAAAGCTTCTAGGATATCCCAGTGAGCAGGAGCAGCAGCAGC
AGAAACAGCGTCCACACGGACCGTGTGCCTAGGGGGCAGGAGTTCTCGGT
GATCCAATCCCGGAAGTGGTAGACATCGGTGTAGATCCCAGCCGAATCAG
GCTCGCCGCAACCCATTCCGAAGGACACGATGCCCGTCACCATGTTGTCA
CAGATGAGGGGCCCGCCCGAGTCGCCCTGGCAGCTGTCCACATCGGAGTC
GTGCTTGTCATTGGCGCAGAGCATGCCAGCGTTGGACCAGCCCAGCAGCT
TCTCGCAGAAGGTGTCCGGCAGGATCTGCATATCGCCGTTGATGGCCTCA
TCTGGCAGTGGTCCGAACTGAATGACCGTGCCCCAGCCGACGATGGAGCA
CGGGGCCCCGGCCACCGGAACCTTGTTGTACAGAGGTATTTTGGCAACGG
CATCACCCAGACTGAGATCCGCCTCCAACAGAATCAATCCTATGTCGTAC
TTCTGCGACTTGCCCTTCTTGTACTTGGGATGCGGCAATAGCTCCTCGGC
CTCAATAATCTGTGTTGTACTGCTCTTGAGCAGCCTCCTTGGCGTCCCGG
CAACGACCATCAACTTCTTGGCCTTCAGCTTTCGCCGATTGCTGAACATG
CAATGGGCCGCCGTGAGAATGGCCCGCTCGCTGAAGATCGTTCCCGCGCA
AAAGTGGTTATCGCCGAAGAACTTCTTCGGCTTGCCCATGCGCAGCGAAA
CCGTGTACTTGACCAGGTCGTTGGTATCCGGTCGATAGCCACCAGTGACC
AGGAACTGAAAGTCCGATGGTCGGTCCTGCCTCTGACTGGGCGCCGAATG
CAGCTGGCCCGCCTGTGATTCCGAGTTCG
BS06030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-PA | 918 | CG3795-RA | 56..918 | 879..17 | 4315 | 100 | Minus |
CG8279-PA | 3396 | Pde6-RA | 9..35 | 26..52 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-RB | 1247 | CG3795-RB | 102..964 | 879..17 | 4315 | 100 | Minus |
CG3795-RA | 1115 | CG3795-RA | 102..964 | 879..17 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1709089..1709442 | 17..370 | 1770 | 100 | Plus |
X | 23542271 | X | 1709505..1709775 | 368..638 | 1355 | 100 | Plus |
X | 23542271 | X | 1709841..1710081 | 639..879 | 1205 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2370 | 33..59 | 108 | 88.9 | Plus |
BS06030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:59 Download gff for
BS06030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-PA | 56..918 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:53 Download gff for
BS06030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-PA | 56..918 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:45:33 Download gff for
BS06030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 83..948 | 13..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:36 Download gff for
BS06030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 102..967 | 13..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:36 Download gff for
BS06030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1709505..1709775 | 368..638 | 100 | <- | Plus |
X | 1709841..1710081 | 639..879 | 100 | | Plus |
X | 1709086..1709439 | 13..367 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:45:33 Download gff for
BS06030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1603119..1603472 | 13..367 | 99 | <- | Plus |
arm_X | 1603538..1603808 | 368..638 | 100 | <- | Plus |
arm_X | 1603874..1604114 | 639..879 | 100 | | Plus |
BS06030.5prime Sequence
836 bp (796 high quality bases) assembled on 2005-12-03
> BS06030.5prime
GAAGTTATCAGTCGACATGTGTCCGTCAAAATTTGTTGTCTACATACTGC
TGATTTCCGTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTG
CATTCGGCGCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCT
GGTCACTGGTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGG
TTTCGCTGCGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTT
TGCGCGGGAACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTG
CATGTTCAGCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTG
CCGGGACGCCAAGGAGGCTGCTCAAGAGCAGTACAACACAGATTATTGAG
GCCGAGGAGCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAA
GTACGACATAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATG
CCGTTGCCAAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCG
TGCTCCATCGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGA
TGAGGCCATCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGA
AGCTGCTGGGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCAC
GACTCCGATGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTG
TGACAACATGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGCGAGC
CTGATTCGGCTGGGATCTACACCGATGTCTACCACT
BS06030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-PA | 918 | CG3795-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-RB | 1247 | CG3795-RB | 47..866 | 17..836 | 4100 | 100 | Plus |
CG3795-RA | 1115 | CG3795-RA | 47..866 | 17..836 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1709841..1710136 | 312..17 | 1480 | 100 | Minus |
X | 23542271 | X | 1709505..1709775 | 583..313 | 1355 | 100 | Minus |
X | 23542271 | X | 1709187..1709442 | 836..581 | 1280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:24:53 has no hits.
BS06030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:00 Download gff for
BS06030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:54 Download gff for
BS06030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:33:40 Download gff for
BS06030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 25..847 | 14..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:20 Download gff for
BS06030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 44..866 | 14..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:20 Download gff for
BS06030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1709841..1710139 | 14..312 | 99 | | Minus |
X | 1709187..1709439 | 584..836 | 100 | <- | Minus |
X | 1709505..1709775 | 313..583 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:33:40 Download gff for
BS06030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1603220..1603472 | 584..836 | 100 | <- | Minus |
arm_X | 1603538..1603808 | 313..583 | 100 | <- | Minus |
arm_X | 1603874..1604172 | 14..312 | 99 | | Minus |
BS06030.complete Sequence
950 bp (950 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635322
> BS06030.complete
GAAGTTATCAGTCGACATGTGTCCGTCAAAATTTGTTGTCTACATACTGC
TGATTTCCGTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTG
CATTCGGCGCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCT
GGTCACTGGTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGG
TTTCGCTGCGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTT
TGCGCGGGAACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTG
CATGTTCAGCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTG
CCGGGACGCCAAGGAGGCTGCTCAAGAGCAGTACAACACAGATTATTGAG
GCCGAGGAGCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAA
GTACGACATAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATG
CCGTTGCCAAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCG
TGCTCCATCGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGA
TGAGGCCATCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGA
AGCTGCTGGGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCAC
GACTCCGATGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTG
TGACAACATGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGCGAGC
CTGATTCGGCTGGGATCTACACCGATGTCTACCACTTCCGGGATTGGATC
ACCGAGAACTCCTGCCCCCTAGGCACACGGTCCGTGTGGACGCTGTTTCT
GCTGCTGCTGCTCCTGCTCACTGGGATATCCTAGAAGCTTTCTAGACCAT
BS06030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-RB | 918 | CG3795-PB | 1..918 | 17..934 | 4590 | 100 | Plus |
CG3795-RA | 918 | CG3795-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-RB | 1247 | CG3795-RB | 47..964 | 17..934 | 4590 | 100 | Plus |
CG3795-RA | 1115 | CG3795-RA | 47..964 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1709089..1709442 | 934..581 | 1770 | 100 | Minus |
X | 23542271 | X | 1709841..1710136 | 312..17 | 1480 | 100 | Minus |
X | 23542271 | X | 1709505..1709775 | 583..313 | 1355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:40:32 has no hits.
BS06030.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:59 Download gff for
BS06030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 1..918 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:59 Download gff for
BS06030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 25..948 | 14..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:07 Download gff for
BS06030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 28..945 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:59 Download gff for
BS06030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 25..948 | 14..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:53 Download gff for
BS06030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 47..964 | 17..934 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:53 Download gff for
BS06030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1709089..1709439 | 584..934 | 100 | <- | Minus |
X | 1709505..1709775 | 313..583 | 100 | <- | Minus |
X | 1709841..1710136 | 17..312 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:07 Download gff for
BS06030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1603122..1603472 | 584..934 | 100 | <- | Minus |
arm_X | 1603538..1603808 | 313..583 | 100 | <- | Minus |
arm_X | 1603874..1604169 | 17..312 | 100 | | Minus |
BS06030.pep Sequence
Translation from 16 to 933
> BS06030.pep
MCPSKFVVYILLISVSANSNSESQAGQLHSAPSQRQDRPSDFQFLVTGGY
RPDTNDLVKYTVSLRMGKPKKFFGDNHFCAGTIFSERAILTAAHCMFSNR
RKLKAKKLMVVAGTPRRLLKSSTTQIIEAEELLPHPKYKKGKSQKYDIGL
ILLEADLSLGDAVAKIPLYNKVPVAGAPCSIVGWGTVIQFGPLPDEAING
DMQILPDTFCEKLLGWSNAGMLCANDKHDSDVDSCQGDSGGPLICDNMVT
GIVSFGMGCGEPDSAGIYTDVYHFRDWITENSCPLGTRSVWTLFLLLLLL
LTGIS*
BS06030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-PB | 305 | CG3795-PB | 1..305 | 1..305 | 1613 | 100 | Plus |
CG3795-PA | 305 | CG3795-PA | 1..305 | 1..305 | 1613 | 100 | Plus |
CG18223-PA | 322 | CG18223-PA | 57..280 | 57..278 | 364 | 36.7 | Plus |
CG14780-PA | 302 | CG14780-PA | 42..293 | 56..301 | 342 | 32.5 | Plus |
CG13527-PA | 290 | CG13527-PA | 36..288 | 53..301 | 336 | 31.5 | Plus |