Clone BS06032 Report

Search the DGRC for BS06032

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptJafrac2-RA
Protein status:BS06032.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06032.3prime Sequence

759 bp (758 high quality bases) assembled on 2005-12-03

> BS06032.3prime
ATGGTCTAGAAAGCTTCTAGTTGTTCTTGGCAAAGTACTTCGTCTTCTCC
TCAGGATTGGGAACGATCGTATCGGCACCTGGCCGCCAACCTGCTGGGCA
AACCTCTCCATGGGTGTCCGTATACTGGAAGGCCTGAACCAGACGAATAG
TCTCGTCCACAGAGCGTCCCACGGGCAAATCATTCATGGTGATCTGTCGC
AGCACTCCGGTCTGATCGATAATGAAGAGACCGCGCAGCGCATGACCGCT
GGACTCCAAGTAGACTCCGTAGTCCTTGCTGATCTTATGCGTTAGATCGG
AGAGCAGTGGGATCTTCACGTCGCCCAGGCCGCCCTCCTTGCGCGGCGTG
TTTATCCAGGCCAAGTGGGTGAAGTGCGAGTCCACGCTGACGCCAATCAC
CTCGGTCTTGATCTTCTTGAACTCGGCGATGCGGTCGGAGAAGGCAATGA
TCTCCGTTGGGCATACAAAGGTGAAGTCCAGTGGGTAGAAGAGTAGCACC
ACATATTTCCCTAGATACTGGGACAATGATAGCTTCACAATCTCCTTATT
AACCACGGCGGTGCCCTCGAACTGCGGAGCTGGCTTGGAAATGACTGCCT
TGGTGTACTGCAGCTGATGGTCGCCCTTCGGCTGGTCGGGATAAACGGAG
CCGCCGGCGAAGGAATAGCACGATTCATTATCTTCCGGCTTGGCAGCTCC
AACGAGTGCCGCGGACAGCAGTAGGACAGATAAGTACTTGGACATGTCGA
CTGATAACT

BS06032.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1274-PA 729 Jafrac2-RA 1..729 745..17 3645 100 Minus
CG1274-PB 729 Jafrac2-RB 1..729 745..17 3645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac2-RC 1007 CG1274-RC 59..788 746..17 3650 100 Minus
Jafrac2-RB 1178 CG1274-RB 230..959 746..17 3650 100 Minus
Jafrac2-RA 1047 CG1274-RA 99..828 746..17 3650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3043441..3043846 473..68 2030 100 Minus
3L 28110227 3L 3043051..3043205 746..592 775 100 Minus
3L 28110227 3L 3043272..3043389 591..474 590 100 Minus
X 23542271 X 13331215..13331420 508..303 340 77.7 Minus
3L 28110227 3L 3043904..3043955 68..17 260 100 Minus
3L 28110227 3L 26297190..26297250 746..686 245 93.4 Minus
3L 28110227 3L 26352859..26352919 746..686 245 93.4 Minus
3L 28110227 3L 26617408..26617468 746..686 245 93.4 Minus
3L 28110227 3L 26623291..26623351 746..686 245 93.4 Minus
3L 28110227 3L 27065954..27066014 746..686 245 93.4 Minus
3CEN 744266 3CEN 543958..544018 686..746 245 93.4 Plus
X 23542271 X 13331522..13331627 201..96 185 78.3 Minus
Blast to na_te.dros performed on 2015-02-02 18:05:15 has no hits.

BS06032.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:03 Download gff for BS06032.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1274-PB 1..729 17..745 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:58 Download gff for BS06032.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1274-PB 1..729 17..745 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:08:42 Download gff for BS06032.3prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 95..828 17..753 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:50:33 Download gff for BS06032.3prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 95..828 17..753 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:50:33 Download gff for BS06032.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3043441..3043846 68..473 100 -> Minus
3L 3043905..3043955 17..67 100   Minus
3L 3043041..3043205 592..754 97 -> Minus
3L 3043272..3043389 474..591 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:08:42 Download gff for BS06032.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3043041..3043205 592..754 97 -> Minus
arm_3L 3043272..3043389 474..591 100 -> Minus
arm_3L 3043441..3043846 68..473 100 -> Minus
arm_3L 3043905..3043955 17..67 100   Minus

BS06032.5prime Sequence

759 bp (758 high quality bases) assembled on 2005-12-03

> BS06032.5prime
GAAGTTATCAGTCGACATGTCCAAGTACTTATCTGTCCTACTGCTGTCCG
CGGCACTCGTTGGAGCTGCCAAGCCGGAAGATAATGAATCGTGCTATTCC
TTCGCCGGCGGCTCCGTTTATCCCGACCAGCCGAAGGGCGACCATCAGCT
GCAGTACACCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGTTCGAGGGCA
CCGCCGTGGTTAATAAGGAGATTGTGAAGCTATCATTGTCCCAGTATCTA
GGGAAATATGTGGTGCTACTCTTCTACCCACTGGACTTCACCTTTGTATG
CCCAACGGAGATCATTGCCTTCTCCGACCGCATCGCCGAGTTCAAGAAGA
TCAAGACCGAGGTGATTGGCGTCAGCGTGGACTCGCACTTCACCCACTTG
GCCTGGATAAACACGCCGCGCAAGGAGGGCGGCCTGGGCGACGTGAAGAT
CCCACTGCTCTCCGATCTAACGCATAAGATCAGCAAGGACTACGGAGTCT
ACTTGGAGTCCAGCGGTCATGCGCTGCGCGGTCTCTTCATTATCGATCAG
ACCGGAGTGCTGCGACAGATCACCATGAATGATTTGCCCGTGGGACGCTC
TGTGGACGAGACTATTCGTCTGGTTCAGGCCTTCCAGTATACGGACACCC
ATGGAGAGGTTTGCCCAGCAGGTTGGCGGCCAGGTGCCGATACGATCGTT
CCCAATCCTGAGGAGAAGACGAAGTACTTTGCCAAGAACAACTAGAAGCT
TTCTAGACC

BS06032.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1274-PA 729 Jafrac2-RA 1..729 17..745 3645 100 Plus
CG1274-PB 729 Jafrac2-RB 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac2-RC 1007 CG1274-RC 59..788 16..745 3650 100 Plus
Jafrac2-RB 1178 CG1274-RB 230..959 16..745 3650 100 Plus
Jafrac2-RA 1047 CG1274-RA 99..828 16..745 3650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3043441..3043846 289..694 2030 100 Plus
3L 28110227 3L 3043051..3043205 16..170 775 100 Plus
3L 28110227 3L 3043272..3043389 171..288 590 100 Plus
X 23542271 X 13331215..13331420 254..459 340 77.7 Plus
3L 28110227 3L 3043904..3043955 694..745 260 100 Plus
3L 28110227 3L 26297190..26297250 16..76 245 93.4 Plus
3L 28110227 3L 26352859..26352919 16..76 245 93.4 Plus
3L 28110227 3L 26617408..26617468 16..76 245 93.4 Plus
3L 28110227 3L 26623291..26623351 16..76 245 93.4 Plus
3L 28110227 3L 27065954..27066014 16..76 245 93.4 Plus
3CEN 744266 3CEN 543958..544018 76..16 245 93.4 Minus
X 23542271 X 13331522..13331627 561..666 185 78.3 Plus
Blast to na_te.dros performed on 2015-02-13 01:16:59 has no hits.

BS06032.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:05 Download gff for BS06032.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1274-PB 1..729 17..745 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:00 Download gff for BS06032.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1274-PB 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:38 Download gff for BS06032.5prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 95..828 9..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:23 Download gff for BS06032.5prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 95..828 9..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:23 Download gff for BS06032.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3043041..3043205 8..170 97 -> Plus
3L 3043272..3043389 171..288 100 -> Plus
3L 3043441..3043846 289..694 100 -> Plus
3L 3043905..3043955 695..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:38 Download gff for BS06032.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3043041..3043205 8..170 97 -> Plus
arm_3L 3043272..3043389 171..288 100 -> Plus
arm_3L 3043441..3043846 289..694 100 -> Plus
arm_3L 3043905..3043955 695..745 100   Plus

BS06032.complete Sequence

761 bp (761 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635323

> BS06032.complete
GAAGTTATCAGTCGACATGTCCAAGTACTTATCTGTCCTACTGCTGTCCG
CGGCACTCGTTGGAGCTGCCAAGCCGGAAGATAATGAATCGTGCTATTCC
TTCGCCGGCGGCTCCGTTTATCCCGACCAGCCGAAGGGCGACCATCAGCT
GCAGTACACCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGTTCGAGGGCA
CCGCCGTGGTTAATAAGGAGATTGTGAAGCTATCATTGTCCCAGTATCTA
GGGAAATATGTGGTGCTACTCTTCTACCCACTGGACTTCACCTTTGTATG
CCCAACGGAGATCATTGCCTTCTCCGACCGCATCGCCGAGTTCAAGAAGA
TCAAGACCGAGGTGATTGGCGTCAGCGTGGACTCGCACTTCACCCACTTG
GCCTGGATAAACACGCCGCGCAAGGAGGGCGGCCTGGGCGACGTGAAGAT
CCCACTGCTCTCCGATCTAACGCATAAGATCAGCAAGGACTACGGAGTCT
ACTTGGAGTCCAGCGGTCATGCGCTGCGCGGTCTCTTCATTATCGATCAG
ACCGGAGTGCTGCGACAGATCACCATGAATGATTTGCCCGTGGGACGCTC
TGTGGACGAGACTATTCGTCTGGTTCAGGCCTTCCAGTATACGGACACCC
ATGGAGAGGTTTGCCCAGCAGGTTGGCGGCCAGGTGCCGATACGATCGTT
CCCAATCCTGAGGAGAAGACGAAGTACTTTGCCAAGAACAACTAGAAGCT
TTCTAGACCAT

BS06032.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac2-RC 729 CG1274-PC 1..729 17..745 3645 100 Plus
Jafrac2-RB 729 CG1274-PB 1..729 17..745 3645 100 Plus
Jafrac2-RA 729 CG1274-PA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac2-RC 1007 CG1274-RC 59..788 16..745 3650 100 Plus
Jafrac2-RB 1178 CG1274-RB 230..959 16..745 3650 100 Plus
Jafrac2-RA 1047 CG1274-RA 99..828 16..745 3650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3043441..3043846 289..694 2030 100 Plus
3L 28110227 3L 3043051..3043205 16..170 775 100 Plus
3L 28110227 3L 3043272..3043389 171..288 590 100 Plus
X 23542271 X 13331215..13331420 254..459 340 77.7 Plus
3L 28110227 3L 3043904..3043955 694..745 260 100 Plus
3L 28110227 3L 26297190..26297250 16..76 245 93.4 Plus
3L 28110227 3L 26352859..26352919 16..76 245 93.4 Plus
3L 28110227 3L 26617408..26617468 16..76 245 93.4 Plus
3L 28110227 3L 26623291..26623351 16..76 245 93.4 Plus
3L 28110227 3L 27065954..27066014 16..76 245 93.4 Plus
3CEN 744266 3CEN 543958..544018 76..16 245 93.4 Minus
X 23542271 X 13331522..13331627 561..666 185 78.3 Plus
Blast to na_te.dros performed on 2014-11-27 13:15:48 has no hits.

BS06032.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:01 Download gff for BS06032.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RB 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:01 Download gff for BS06032.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RB 226..959 9..745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:15:50 Download gff for BS06032.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 100..828 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:01 Download gff for BS06032.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RB 175..908 9..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:23 Download gff for BS06032.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 100..828 17..745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:23 Download gff for BS06032.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3043052..3043205 17..170 100 -> Plus
3L 3043272..3043389 171..288 100 -> Plus
3L 3043441..3043846 289..694 100 -> Plus
3L 3043905..3043955 695..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:15:50 Download gff for BS06032.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3043052..3043205 17..170 100 -> Plus
arm_3L 3043272..3043389 171..288 100 -> Plus
arm_3L 3043441..3043846 289..694 100 -> Plus
arm_3L 3043905..3043955 695..745 100   Plus

BS06032.pep Sequence

Translation from 16 to 744

> BS06032.pep
MSKYLSVLLLSAALVGAAKPEDNESCYSFAGGSVYPDQPKGDHQLQYTKA
VISKPAPQFEGTAVVNKEIVKLSLSQYLGKYVVLLFYPLDFTFVCPTEII
AFSDRIAEFKKIKTEVIGVSVDSHFTHLAWINTPRKEGGLGDVKIPLLSD
LTHKISKDYGVYLESSGHALRGLFIIDQTGVLRQITMNDLPVGRSVDETI
RLVQAFQYTDTHGEVCPAGWRPGADTIVPNPEEKTKYFAKNN*

BS06032.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac2-PC 242 CG1274-PC 1..242 1..242 1260 100 Plus
Jafrac2-PB 242 CG1274-PB 1..242 1..242 1260 100 Plus
Jafrac2-PA 242 CG1274-PA 1..242 1..242 1260 100 Plus
Jafrac1-PE 194 CG1633-PE 4..190 52..238 657 66.3 Plus
Jafrac1-PD 194 CG1633-PD 4..190 52..238 657 66.3 Plus