Clone Sequence Records
BS06032.3prime Sequence
759 bp (758 high quality bases) assembled on 2005-12-03
> BS06032.3prime
ATGGTCTAGAAAGCTTCTAGTTGTTCTTGGCAAAGTACTTCGTCTTCTCC
TCAGGATTGGGAACGATCGTATCGGCACCTGGCCGCCAACCTGCTGGGCA
AACCTCTCCATGGGTGTCCGTATACTGGAAGGCCTGAACCAGACGAATAG
TCTCGTCCACAGAGCGTCCCACGGGCAAATCATTCATGGTGATCTGTCGC
AGCACTCCGGTCTGATCGATAATGAAGAGACCGCGCAGCGCATGACCGCT
GGACTCCAAGTAGACTCCGTAGTCCTTGCTGATCTTATGCGTTAGATCGG
AGAGCAGTGGGATCTTCACGTCGCCCAGGCCGCCCTCCTTGCGCGGCGTG
TTTATCCAGGCCAAGTGGGTGAAGTGCGAGTCCACGCTGACGCCAATCAC
CTCGGTCTTGATCTTCTTGAACTCGGCGATGCGGTCGGAGAAGGCAATGA
TCTCCGTTGGGCATACAAAGGTGAAGTCCAGTGGGTAGAAGAGTAGCACC
ACATATTTCCCTAGATACTGGGACAATGATAGCTTCACAATCTCCTTATT
AACCACGGCGGTGCCCTCGAACTGCGGAGCTGGCTTGGAAATGACTGCCT
TGGTGTACTGCAGCTGATGGTCGCCCTTCGGCTGGTCGGGATAAACGGAG
CCGCCGGCGAAGGAATAGCACGATTCATTATCTTCCGGCTTGGCAGCTCC
AACGAGTGCCGCGGACAGCAGTAGGACAGATAAGTACTTGGACATGTCGA
CTGATAACT
BS06032.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1274-PA | 729 | Jafrac2-RA | 1..729 | 745..17 | 3645 | 100 | Minus |
CG1274-PB | 729 | Jafrac2-RB | 1..729 | 745..17 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac2-RC | 1007 | CG1274-RC | 59..788 | 746..17 | 3650 | 100 | Minus |
Jafrac2-RB | 1178 | CG1274-RB | 230..959 | 746..17 | 3650 | 100 | Minus |
Jafrac2-RA | 1047 | CG1274-RA | 99..828 | 746..17 | 3650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3043441..3043846 | 473..68 | 2030 | 100 | Minus |
3L | 28110227 | 3L | 3043051..3043205 | 746..592 | 775 | 100 | Minus |
3L | 28110227 | 3L | 3043272..3043389 | 591..474 | 590 | 100 | Minus |
X | 23542271 | X | 13331215..13331420 | 508..303 | 340 | 77.7 | Minus |
3L | 28110227 | 3L | 3043904..3043955 | 68..17 | 260 | 100 | Minus |
3L | 28110227 | 3L | 26297190..26297250 | 746..686 | 245 | 93.4 | Minus |
3L | 28110227 | 3L | 26352859..26352919 | 746..686 | 245 | 93.4 | Minus |
3L | 28110227 | 3L | 26617408..26617468 | 746..686 | 245 | 93.4 | Minus |
3L | 28110227 | 3L | 26623291..26623351 | 746..686 | 245 | 93.4 | Minus |
3L | 28110227 | 3L | 27065954..27066014 | 746..686 | 245 | 93.4 | Minus |
3CEN | 744266 | 3CEN | 543958..544018 | 686..746 | 245 | 93.4 | Plus |
X | 23542271 | X | 13331522..13331627 | 201..96 | 185 | 78.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:05:15 has no hits.
BS06032.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:03 Download gff for
BS06032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1274-PB | 1..729 | 17..745 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:58 Download gff for
BS06032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1274-PB | 1..729 | 17..745 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:08:42 Download gff for
BS06032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 95..828 | 17..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:50:33 Download gff for
BS06032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 95..828 | 17..753 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:50:33 Download gff for
BS06032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3043441..3043846 | 68..473 | 100 | -> | Minus |
3L | 3043905..3043955 | 17..67 | 100 | | Minus |
3L | 3043041..3043205 | 592..754 | 97 | -> | Minus |
3L | 3043272..3043389 | 474..591 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:08:42 Download gff for
BS06032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3043041..3043205 | 592..754 | 97 | -> | Minus |
arm_3L | 3043272..3043389 | 474..591 | 100 | -> | Minus |
arm_3L | 3043441..3043846 | 68..473 | 100 | -> | Minus |
arm_3L | 3043905..3043955 | 17..67 | 100 | | Minus |
BS06032.5prime Sequence
759 bp (758 high quality bases) assembled on 2005-12-03
> BS06032.5prime
GAAGTTATCAGTCGACATGTCCAAGTACTTATCTGTCCTACTGCTGTCCG
CGGCACTCGTTGGAGCTGCCAAGCCGGAAGATAATGAATCGTGCTATTCC
TTCGCCGGCGGCTCCGTTTATCCCGACCAGCCGAAGGGCGACCATCAGCT
GCAGTACACCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGTTCGAGGGCA
CCGCCGTGGTTAATAAGGAGATTGTGAAGCTATCATTGTCCCAGTATCTA
GGGAAATATGTGGTGCTACTCTTCTACCCACTGGACTTCACCTTTGTATG
CCCAACGGAGATCATTGCCTTCTCCGACCGCATCGCCGAGTTCAAGAAGA
TCAAGACCGAGGTGATTGGCGTCAGCGTGGACTCGCACTTCACCCACTTG
GCCTGGATAAACACGCCGCGCAAGGAGGGCGGCCTGGGCGACGTGAAGAT
CCCACTGCTCTCCGATCTAACGCATAAGATCAGCAAGGACTACGGAGTCT
ACTTGGAGTCCAGCGGTCATGCGCTGCGCGGTCTCTTCATTATCGATCAG
ACCGGAGTGCTGCGACAGATCACCATGAATGATTTGCCCGTGGGACGCTC
TGTGGACGAGACTATTCGTCTGGTTCAGGCCTTCCAGTATACGGACACCC
ATGGAGAGGTTTGCCCAGCAGGTTGGCGGCCAGGTGCCGATACGATCGTT
CCCAATCCTGAGGAGAAGACGAAGTACTTTGCCAAGAACAACTAGAAGCT
TTCTAGACC
BS06032.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1274-PA | 729 | Jafrac2-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
CG1274-PB | 729 | Jafrac2-RB | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac2-RC | 1007 | CG1274-RC | 59..788 | 16..745 | 3650 | 100 | Plus |
Jafrac2-RB | 1178 | CG1274-RB | 230..959 | 16..745 | 3650 | 100 | Plus |
Jafrac2-RA | 1047 | CG1274-RA | 99..828 | 16..745 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3043441..3043846 | 289..694 | 2030 | 100 | Plus |
3L | 28110227 | 3L | 3043051..3043205 | 16..170 | 775 | 100 | Plus |
3L | 28110227 | 3L | 3043272..3043389 | 171..288 | 590 | 100 | Plus |
X | 23542271 | X | 13331215..13331420 | 254..459 | 340 | 77.7 | Plus |
3L | 28110227 | 3L | 3043904..3043955 | 694..745 | 260 | 100 | Plus |
3L | 28110227 | 3L | 26297190..26297250 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26352859..26352919 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26617408..26617468 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26623291..26623351 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 27065954..27066014 | 16..76 | 245 | 93.4 | Plus |
3CEN | 744266 | 3CEN | 543958..544018 | 76..16 | 245 | 93.4 | Minus |
X | 23542271 | X | 13331522..13331627 | 561..666 | 185 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:16:59 has no hits.
BS06032.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:05 Download gff for
BS06032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1274-PB | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:00 Download gff for
BS06032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1274-PB | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:38 Download gff for
BS06032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 95..828 | 9..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:23 Download gff for
BS06032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 95..828 | 9..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:23 Download gff for
BS06032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3043041..3043205 | 8..170 | 97 | -> | Plus |
3L | 3043272..3043389 | 171..288 | 100 | -> | Plus |
3L | 3043441..3043846 | 289..694 | 100 | -> | Plus |
3L | 3043905..3043955 | 695..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:38 Download gff for
BS06032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3043041..3043205 | 8..170 | 97 | -> | Plus |
arm_3L | 3043272..3043389 | 171..288 | 100 | -> | Plus |
arm_3L | 3043441..3043846 | 289..694 | 100 | -> | Plus |
arm_3L | 3043905..3043955 | 695..745 | 100 | | Plus |
BS06032.complete Sequence
761 bp (761 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635323
> BS06032.complete
GAAGTTATCAGTCGACATGTCCAAGTACTTATCTGTCCTACTGCTGTCCG
CGGCACTCGTTGGAGCTGCCAAGCCGGAAGATAATGAATCGTGCTATTCC
TTCGCCGGCGGCTCCGTTTATCCCGACCAGCCGAAGGGCGACCATCAGCT
GCAGTACACCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGTTCGAGGGCA
CCGCCGTGGTTAATAAGGAGATTGTGAAGCTATCATTGTCCCAGTATCTA
GGGAAATATGTGGTGCTACTCTTCTACCCACTGGACTTCACCTTTGTATG
CCCAACGGAGATCATTGCCTTCTCCGACCGCATCGCCGAGTTCAAGAAGA
TCAAGACCGAGGTGATTGGCGTCAGCGTGGACTCGCACTTCACCCACTTG
GCCTGGATAAACACGCCGCGCAAGGAGGGCGGCCTGGGCGACGTGAAGAT
CCCACTGCTCTCCGATCTAACGCATAAGATCAGCAAGGACTACGGAGTCT
ACTTGGAGTCCAGCGGTCATGCGCTGCGCGGTCTCTTCATTATCGATCAG
ACCGGAGTGCTGCGACAGATCACCATGAATGATTTGCCCGTGGGACGCTC
TGTGGACGAGACTATTCGTCTGGTTCAGGCCTTCCAGTATACGGACACCC
ATGGAGAGGTTTGCCCAGCAGGTTGGCGGCCAGGTGCCGATACGATCGTT
CCCAATCCTGAGGAGAAGACGAAGTACTTTGCCAAGAACAACTAGAAGCT
TTCTAGACCAT
BS06032.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac2-RC | 729 | CG1274-PC | 1..729 | 17..745 | 3645 | 100 | Plus |
Jafrac2-RB | 729 | CG1274-PB | 1..729 | 17..745 | 3645 | 100 | Plus |
Jafrac2-RA | 729 | CG1274-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac2-RC | 1007 | CG1274-RC | 59..788 | 16..745 | 3650 | 100 | Plus |
Jafrac2-RB | 1178 | CG1274-RB | 230..959 | 16..745 | 3650 | 100 | Plus |
Jafrac2-RA | 1047 | CG1274-RA | 99..828 | 16..745 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3043441..3043846 | 289..694 | 2030 | 100 | Plus |
3L | 28110227 | 3L | 3043051..3043205 | 16..170 | 775 | 100 | Plus |
3L | 28110227 | 3L | 3043272..3043389 | 171..288 | 590 | 100 | Plus |
X | 23542271 | X | 13331215..13331420 | 254..459 | 340 | 77.7 | Plus |
3L | 28110227 | 3L | 3043904..3043955 | 694..745 | 260 | 100 | Plus |
3L | 28110227 | 3L | 26297190..26297250 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26352859..26352919 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26617408..26617468 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26623291..26623351 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 27065954..27066014 | 16..76 | 245 | 93.4 | Plus |
3CEN | 744266 | 3CEN | 543958..544018 | 76..16 | 245 | 93.4 | Minus |
X | 23542271 | X | 13331522..13331627 | 561..666 | 185 | 78.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:15:48 has no hits.
BS06032.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:01 Download gff for
BS06032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RB | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:01 Download gff for
BS06032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RB | 226..959 | 9..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:15:50 Download gff for
BS06032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 100..828 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:01 Download gff for
BS06032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RB | 175..908 | 9..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:23 Download gff for
BS06032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 100..828 | 17..745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:23 Download gff for
BS06032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3043052..3043205 | 17..170 | 100 | -> | Plus |
3L | 3043272..3043389 | 171..288 | 100 | -> | Plus |
3L | 3043441..3043846 | 289..694 | 100 | -> | Plus |
3L | 3043905..3043955 | 695..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:15:50 Download gff for
BS06032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3043052..3043205 | 17..170 | 100 | -> | Plus |
arm_3L | 3043272..3043389 | 171..288 | 100 | -> | Plus |
arm_3L | 3043441..3043846 | 289..694 | 100 | -> | Plus |
arm_3L | 3043905..3043955 | 695..745 | 100 | | Plus |
BS06032.pep Sequence
Translation from 16 to 744
> BS06032.pep
MSKYLSVLLLSAALVGAAKPEDNESCYSFAGGSVYPDQPKGDHQLQYTKA
VISKPAPQFEGTAVVNKEIVKLSLSQYLGKYVVLLFYPLDFTFVCPTEII
AFSDRIAEFKKIKTEVIGVSVDSHFTHLAWINTPRKEGGLGDVKIPLLSD
LTHKISKDYGVYLESSGHALRGLFIIDQTGVLRQITMNDLPVGRSVDETI
RLVQAFQYTDTHGEVCPAGWRPGADTIVPNPEEKTKYFAKNN*
BS06032.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac2-PC | 242 | CG1274-PC | 1..242 | 1..242 | 1260 | 100 | Plus |
Jafrac2-PB | 242 | CG1274-PB | 1..242 | 1..242 | 1260 | 100 | Plus |
Jafrac2-PA | 242 | CG1274-PA | 1..242 | 1..242 | 1260 | 100 | Plus |
Jafrac1-PE | 194 | CG1633-PE | 4..190 | 52..238 | 657 | 66.3 | Plus |
Jafrac1-PD | 194 | CG1633-PD | 4..190 | 52..238 | 657 | 66.3 | Plus |