Clone Sequence Records
BS06035.3prime Sequence
798 bp (774 high quality bases) assembled on 2005-12-03
> BS06035.3prime
ATGGTCTAGAAAGCTTTTACACATTTGTAGCGGGTGCTTGAAAATGCAAT
ACATCGATGGCACTAAGGATCCAGTTACGATAACGCGCCACACTAGCGTA
CAGAGAAGATCCCAAGCAAACAATGTTTCCCGTTCTCGATGTGATCCCCA
CTAGCTGGCCGTTGAAGACCAAGGGTCCACCGGAATCTCCATAACAGCCG
CCTTTTCCCATTCTTCCCGCGCAGATGTCCTCATTGAACACACCGTTGCC
ATATTTCAATTTACACACGATCAGCGGCCGAATAAGGATTTCAACTCCCT
GAAGTTGTCGTGGTCGAATTAAAAAATTTCCACGTCCCCAGCCAGTGGCT
AGCGCCGAAGACGACGTGGGAGGATCCGTCTCGGCCAAGGGAATTGTTTG
TATGGAATCGGAAAAACTTAAAGGACTGCTCAGTTTGAGGACAGCCACGT
CGTTCTCCATGTTATGTTTATCAAATTGTGGGTGAATGATATATGCTTCC
ACTCCCACCACAACTCCTCCGCTATCATGCAGCGAGGATCCTGCTCGAAT
TGAGCGTTCACCTTCTTTAATACAGTGGGCAGCTGTTATAATTATGGTTT
TACTGTAGATGGATCCGCCGCAAAAATGTTCGCCGTAGTACTGTAAGGAC
ACCTGCCACGGAACATCAGTGATGTCCATGCTGCTTCCGCCGATGATGCG
TTCAGATGGCTCCAAAAGGACAGGTACCACCGGAGAAATCAGCAAATGTA
CTGCCAAAAGCAAATGAAAGCACTTGGAAAACATGTCGACTGATAACT
BS06035.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17012-PA | 768 | CG17012-RA | 1..768 | 784..17 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Send1-RA | 875 | CG17012-RA | 11..778 | 784..17 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2254273..2255040 | 17..784 | 3840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:21:48 has no hits.
BS06035.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:10 Download gff for
BS06035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17012-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:06 Download gff for
BS06035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17012-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:15 Download gff for
BS06035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Send1-RA | 1..781 | 10..792 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:20 Download gff for
BS06035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Send1-RA | 1..781 | 10..792 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:20 Download gff for
BS06035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2254270..2255045 | 10..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:15 Download gff for
BS06035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2254270..2255045 | 10..789 | 99 | | Plus |
BS06035.5prime Sequence
798 bp (754 high quality bases) assembled on 2005-12-03
> BS06035.5prime
GAAGTTATCAGTCGACATGTTTTCCAAGTGCTTTCATTTGCTTTTGGCAG
TACATTTGCTGATTTCTCCGGTGGTACCTGTCCTTTTGGAGCCATCTGAA
CGCATCATCGGCGGAAGCAGCATGGACATCACTGATGTTCCGTGGCAGGT
GTCCTTACAGTACTACGGCGAACATTTTTGCGGCGGATCCATCTACAGTA
AAACCATAATTATAACAGCTGCCCACTGTATTAAAGAAGGTGAACGCTCA
ATTCGAGCAGGATCCTCGCTGCATGATAGCGGAGGAGTTGTGGTGGGAGT
GGAAGCATATATCATTCACCCACAATTTGATAAACATAACATGGAGAACG
ACGTGGCTGTCCTCAAACTGAGCAGTCCTTTAAGTTTTTCCGATTCCATA
CAAACAATTCCCTTGGCCGAGACGGATCCTCCCACGTCGTCTTCGGCGCT
AGCCACTGGCTGGGGACGTGGAAATTTTTTAATTCGACCACGACAACTTC
AGGGAGTTGAAATCCTTATTCGGCCGCTGATCGTGTGTAAATTGAAATAT
GGCAACGGTGTGTTCAATGAGGACATCTGCGCGGGAAGAATGGGAAAAGG
CGGCTGTTATGGAGATTCCGGTGGACCCTTGGTCTTCAACGGCCAGCTAG
TGGGGATCACATCGAGAACGGGAAACATTGTTTGCTTGGGATCTTCTCTG
TACGCTAGTGTGGCGCGTTATCGTAACTGGATCCTTAGTGCCATCGATGT
ATTGCATTTTCAAGCACCCGCTACAAATGTGTAAAAGCTTTCTAGACC
BS06035.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17012-PA | 768 | CG17012-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Send1-RA | 875 | CG17012-RA | 11..778 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2254273..2255040 | 784..17 | 3840 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:02:45 has no hits.
BS06035.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:11 Download gff for
BS06035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17012-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:07 Download gff for
BS06035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17012-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:46:49 Download gff for
BS06035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Send1-RA | 1..781 | 9..791 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:04 Download gff for
BS06035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Send1-RA | 1..781 | 9..791 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:04 Download gff for
BS06035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2254270..2255045 | 12..791 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:46:49 Download gff for
BS06035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2254270..2255045 | 12..791 | 99 | | Minus |
BS06035.complete Sequence
800 bp (800 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635324
> BS06035.complete
GAAGTTATCAGTCGACATGTTTTCCAAGTGCTTTCATTTGCTTTTGGCAG
TACATTTGCTGATTTCTCCGGTGGTACCTGTCCTTTTGGAGCCATCTGAA
CGCATCATCGGCGGAAGCAGCATGGACATCACTGATGTTCCGTGGCAGGT
GTCCTTACAGTACTACGGCGAACATTTTTGCGGCGGATCCATCTACAGTA
AAACCATAATTATAACAGCTGCCCACTGTATTAAAGAAGGTGAACGCTCA
ATTCGAGCAGGATCCTCGCTGCATGATAGCGGAGGAGTTGTGGTGGGAGT
GGAAGCATATATCATTCACCCACAATTTGATAAACATAACATGGAGAACG
ACGTGGCTGTCCTCAAACTGAGCAGTCCTTTAAGTTTTTCCGATTCCATA
CAAACAATTCCCTTGGCCGAGACGGATCCTCCCACGTCGTCTTCGGCGCT
AGCCACTGGCTGGGGACGTGGAAATTTTTTAATTCGACCACGACAACTTC
AGGGAGTTGAAATCCTTATTCGGCCGCTGATCGTGTGTAAATTGAAATAT
GGCAACGGTGTGTTCAATGAGGACATCTGCGCGGGAAGAATGGGAAAAGG
CGGCTGTTATGGAGATTCCGGTGGACCCTTGGTCTTCAACGGCCAGCTAG
TGGGGATCACATCGAGAACGGGAAACATTGTTTGCTTGGGATCTTCTCTG
TACGCTAGTGTGGCGCGTTATCGTAACTGGATCCTTAGTGCCATCGATGT
ATTGCATTTTCAAGCACCCGCTACAAATGTGTAAAAGCTTTCTAGACCAT
BS06035.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Send1-RA | 768 | CG17012-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Send1-RA | 875 | CG17012-RA | 11..778 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2254273..2255040 | 784..17 | 3840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:30:23 has no hits.
BS06035.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:02 Download gff for
BS06035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17012-RA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:03 Download gff for
BS06035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17012-RA | 1..781 | 9..791 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:37 Download gff for
BS06035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Send1-RA | 18..776 | 24..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:02 Download gff for
BS06035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17012-RA | 1..781 | 9..791 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:38 Download gff for
BS06035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Send1-RA | 18..776 | 24..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:38 Download gff for
BS06035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2254275..2255033 | 24..782 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:37 Download gff for
BS06035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2254275..2255033 | 24..782 | 100 | | Minus |
BS06035.pep Sequence
Translation from 16 to 783
> BS06035.pep
MFSKCFHLLLAVHLLISPVVPVLLEPSERIIGGSSMDITDVPWQVSLQYY
GEHFCGGSIYSKTIIITAAHCIKEGERSIRAGSSLHDSGGVVVGVEAYII
HPQFDKHNMENDVAVLKLSSPLSFSDSIQTIPLAETDPPTSSSALATGWG
RGNFLIRPRQLQGVEILIRPLIVCKLKYGNGVFNEDICAGRMGKGGCYGD
SGGPLVFNGQLVGITSRTGNIVCLGSSLYASVARYRNWILSAIDVLHFQA
PATNV*
BS06035.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Send1-PA | 255 | CG17012-PA | 1..255 | 1..255 | 1332 | 100 | Plus |
| Send2-PA | 239 | CG18125-PA | 1..230 | 1..244 | 523 | 47.1 | Plus |
| CG17234-PA | 251 | CG17234-PA | 1..247 | 1..243 | 509 | 45.5 | Plus |
| alphaTry-PA | 256 | CG18444-PA | 7..251 | 8..241 | 440 | 44.7 | Plus |
| betaTry-PB | 253 | CG18211-PB | 7..251 | 8..241 | 430 | 43.1 | Plus |
