Clone Sequence Records
BS06036.3prime Sequence
642 bp (641 high quality bases) assembled on 2005-12-03
> BS06036.3prime
ATGGTCTAGAAAGCTTTTATTCAGCCTGGCGGAGACGTGCCAGTCGCTGG
GTGAGCTCGTCTTGCTCTTGGGACACTGCTGTCGAGGCTCCAACGGATTG
GCTCTGAACTCCGCTGGGCAGCTCCATGTTGAGTTCGAGGCCAGCCTCGT
CGGCCACTTGCTGGAGCAGATTGTCGACATCTCCCTGAGGCACCGAGGTG
GTTACCGTGTCGGACATGGTGCCCTCCATTACCGAGCTCTGGACGTCCAG
GTCTTCGAACTGCGATTCAAACTTCTCCATCAGGGAGGAAATCTTCTCCA
GGTTCATACCCTTCATAGCTGCATCCATGGCCTTGACCACGCCGGCCATG
GAGCCGGTGACCTTGCGGGTGGTGAGTGCGGACTGAACCCTACTGGCCAC
TGCATCCACTCGGGCACTCATCCTGAGGTAGTTAACCGCCTGGTTCTTCT
GGCGGATCGCATTCTCTGCGTGGATGCGGGCCACGTCCATGTTGCCCTTC
TGAATCGCCTTCTTGGCCTTTGCCTTCTCCAGCTTCTCCTCCTTCTCACA
TTTCTTTGAGTTTCGTTCCAATTCCTTTACGGCAAACTTTAGATTGAAAA
GGTGTTTTTCCATGGAACTCGTAGACATGTCGACTGATAACT
BS06036.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4108-PA | 612 | Chmp1-RA | 1..612 | 628..17 | 3060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chmp1-RB | 1096 | CG4108-RB | 157..774 | 632..15 | 3090 | 100 | Minus |
Chmp1-RA | 847 | CG4108-RA | 157..774 | 632..15 | 3090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18683217..18683808 | 15..606 | 2960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:38:56 has no hits.
BS06036.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:12 Download gff for
BS06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-PA | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:10 Download gff for
BS06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4108-PA | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:53 Download gff for
BS06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 157..774 | 15..632 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:56 Download gff for
BS06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 157..774 | 15..632 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:56 Download gff for
BS06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18683217..18683808 | 15..606 | 100 | <- | Plus |
3L | 18683880..18683905 | 607..632 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:53 Download gff for
BS06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18676317..18676908 | 15..606 | 100 | <- | Plus |
arm_3L | 18676980..18677005 | 607..632 | 100 | | Plus |
BS06036.5prime Sequence
642 bp (641 high quality bases) assembled on 2005-12-03
> BS06036.5prime
GAAGTTATCAGTCGACATGTCTACGAGTTCCATGGAAAAACACCTTTTCA
ATCTAAAGTTTGCCGTAAAGGAATTGGAACGAAACTCAAAGAAATGTGAG
AAGGAGGAGAAGCTGGAGAAGGCAAAGGCCAAGAAGGCGATTCAGAAGGG
CAACATGGACGTGGCCCGCATCCACGCAGAGAATGCGATCCGCCAGAAGA
ACCAGGCGGTTAACTACCTCAGGATGAGTGCCCGAGTGGATGCAGTGGCC
AGTAGGGTTCAGTCCGCACTCACCACCCGCAAGGTCACCGGCTCCATGGC
CGGCGTGGTCAAGGCCATGGATGCAGCTATGAAGGGTATGAACCTGGAGA
AGATTTCCTCCCTGATGGAGAAGTTTGAATCGCAGTTCGAAGACCTGGAC
GTCCAGAGCTCGGTAATGGAGGGCACCATGTCCGACACGGTAACCACCTC
GGTGCCTCAGGGAGATGTCGACAATCTGCTCCAGCAAGTGGCCGACGAGG
CTGGCCTCGAACTCAACATGGAGCTGCCCAGCGGAGTTCAGAGCCAATCC
GTTGGAGCCTCGACAGCAGTGTCCCAAGAGCAAGACGAGCTCACCCAGCG
ACTGGCACGTCTCCGCCAGGCTGAATAAAAGCTTTCTAGACC
BS06036.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4108-PA | 612 | Chmp1-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chmp1-RB | 1096 | CG4108-RB | 157..774 | 13..630 | 3090 | 100 | Plus |
Chmp1-RA | 847 | CG4108-RA | 157..774 | 13..630 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18683217..18683808 | 630..39 | 2960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:54:53 has no hits.
BS06036.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:13 Download gff for
BS06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-PA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:11 Download gff for
BS06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4108-PA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:12:17 Download gff for
BS06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 157..774 | 13..630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:52 Download gff for
BS06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 157..774 | 13..630 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:52 Download gff for
BS06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18683217..18683808 | 39..630 | 100 | <- | Minus |
3L | 18683880..18683905 | 13..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:12:17 Download gff for
BS06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18676317..18676908 | 39..630 | 100 | <- | Minus |
arm_3L | 18676980..18677005 | 13..38 | 100 | | Minus |
BS06036.complete Sequence
644 bp (644 high quality bases) assembled on 2005-12-09
> BS06036.complete
GAAGTTATCAGTCGACATGTCTACGAGTTCCATGGAAAAACACCTTTTCA
ATCTAAAGTTTGCCGTAAAGGAATTGGAACGAAACTCAAAGAAATGTGAG
AAGGAGGAGAAGCTGGAGAAGGCAAAGGCCAAGAAGGCGATTCAGAAGGG
CAACATGGACGTGGCCCGCATCCACGCAGAGAATGCGATCCGCCAGAAGA
ACCAGGCGGTTAACTACCTCAGGATGAGTGCCCGAGTGGATGCAGTGGCC
AGTAGGGTTCAGTCCGCACTCACCACCCGCAAGGTCACCGGCTCCATGGC
CGGCGTGGTCAAGGCCATGGATGCAGCTATGAAGGGTATGAACCTGGAGA
AGATTTCCTCCCTGATGGAGAAGTTTGAATCGCAGTTCGAAGACCTGGAC
GTCCAGAGCTCGGTAATGGAGGGCACCATGTCCGACACGGTAACCACCTC
GGTGCCTCAGGGAGATGTCGACAATCTGCTCCAGCAAGTGGCCGACGAGG
CTGGCCTCGAACTCAACATGGAGCTGCCCAGCGGAGTTCAGAGCCAATCC
GTTGGAGCCTCGACAGCAGTGTCCCAAGAGCAAGACGAGCTCACCCAGCG
ACTGGCACGTCTCCGCCAGGCTGAATAAAAGCTTTCTAGACCAT
BS06036.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chmp1-RB | 612 | CG4108-PB | 1..612 | 17..628 | 3060 | 100 | Plus |
Chmp1-RA | 612 | CG4108-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chmp1-RB | 1096 | CG4108-RB | 157..774 | 13..630 | 3090 | 100 | Plus |
Chmp1-RA | 847 | CG4108-RA | 157..774 | 13..630 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18683217..18683808 | 630..39 | 2960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:02:13 has no hits.
BS06036.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:38 Download gff for
BS06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:37 Download gff for
BS06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 155..772 | 13..630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:50 Download gff for
BS06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 161..770 | 17..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:39 Download gff for
BS06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 155..772 | 13..630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:52 Download gff for
BS06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 161..770 | 17..626 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:52 Download gff for
BS06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18683221..18683808 | 39..626 | 100 | <- | Minus |
3L | 18683880..18683901 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:50 Download gff for
BS06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18676321..18676908 | 39..626 | 100 | <- | Minus |
arm_3L | 18676980..18677001 | 17..38 | 100 | | Minus |
BS06036.pep Sequence
Translation from 16 to 627
> BS06036.pep
MSTSSMEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVA
RIHAENAIRQKNQAVNYLRMSARVDAVASRVQSALTTRKVTGSMAGVVKA
MDAAMKGMNLEKISSLMEKFESQFEDLDVQSSVMEGTMSDTVTTSVPQGD
VDNLLQQVADEAGLELNMELPSGVQSQSVGASTAVSQEQDELTQRLARLR
QAE*
BS06036.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chmp1-PB | 203 | CG4108-PB | 1..203 | 1..203 | 982 | 100 | Plus |
Chmp1-PA | 203 | CG4108-PA | 1..203 | 1..203 | 982 | 100 | Plus |
Vps2-PA | 256 | CG14542-PA | 15..201 | 6..189 | 237 | 28.3 | Plus |
CHMP2B-PA | 212 | CG4618-PA | 22..212 | 12..202 | 160 | 19.9 | Plus |