Clone BS06036 Report

Search the DGRC for BS06036

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptChmp1-RA
Protein status:BS06036.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06036.3prime Sequence

642 bp (641 high quality bases) assembled on 2005-12-03

> BS06036.3prime
ATGGTCTAGAAAGCTTTTATTCAGCCTGGCGGAGACGTGCCAGTCGCTGG
GTGAGCTCGTCTTGCTCTTGGGACACTGCTGTCGAGGCTCCAACGGATTG
GCTCTGAACTCCGCTGGGCAGCTCCATGTTGAGTTCGAGGCCAGCCTCGT
CGGCCACTTGCTGGAGCAGATTGTCGACATCTCCCTGAGGCACCGAGGTG
GTTACCGTGTCGGACATGGTGCCCTCCATTACCGAGCTCTGGACGTCCAG
GTCTTCGAACTGCGATTCAAACTTCTCCATCAGGGAGGAAATCTTCTCCA
GGTTCATACCCTTCATAGCTGCATCCATGGCCTTGACCACGCCGGCCATG
GAGCCGGTGACCTTGCGGGTGGTGAGTGCGGACTGAACCCTACTGGCCAC
TGCATCCACTCGGGCACTCATCCTGAGGTAGTTAACCGCCTGGTTCTTCT
GGCGGATCGCATTCTCTGCGTGGATGCGGGCCACGTCCATGTTGCCCTTC
TGAATCGCCTTCTTGGCCTTTGCCTTCTCCAGCTTCTCCTCCTTCTCACA
TTTCTTTGAGTTTCGTTCCAATTCCTTTACGGCAAACTTTAGATTGAAAA
GGTGTTTTTCCATGGAACTCGTAGACATGTCGACTGATAACT

BS06036.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4108-PA 612 Chmp1-RA 1..612 628..17 3060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
Chmp1-RB 1096 CG4108-RB 157..774 632..15 3090 100 Minus
Chmp1-RA 847 CG4108-RA 157..774 632..15 3090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18683217..18683808 15..606 2960 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:38:56 has no hits.

BS06036.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:12 Download gff for BS06036.3prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-PA 1..612 17..628 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:10 Download gff for BS06036.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4108-PA 1..612 17..628 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:53 Download gff for BS06036.3prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 157..774 15..632 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:56 Download gff for BS06036.3prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 157..774 15..632 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:56 Download gff for BS06036.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18683217..18683808 15..606 100 <- Plus
3L 18683880..18683905 607..632 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:53 Download gff for BS06036.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18676317..18676908 15..606 100 <- Plus
arm_3L 18676980..18677005 607..632 100   Plus

BS06036.5prime Sequence

642 bp (641 high quality bases) assembled on 2005-12-03

> BS06036.5prime
GAAGTTATCAGTCGACATGTCTACGAGTTCCATGGAAAAACACCTTTTCA
ATCTAAAGTTTGCCGTAAAGGAATTGGAACGAAACTCAAAGAAATGTGAG
AAGGAGGAGAAGCTGGAGAAGGCAAAGGCCAAGAAGGCGATTCAGAAGGG
CAACATGGACGTGGCCCGCATCCACGCAGAGAATGCGATCCGCCAGAAGA
ACCAGGCGGTTAACTACCTCAGGATGAGTGCCCGAGTGGATGCAGTGGCC
AGTAGGGTTCAGTCCGCACTCACCACCCGCAAGGTCACCGGCTCCATGGC
CGGCGTGGTCAAGGCCATGGATGCAGCTATGAAGGGTATGAACCTGGAGA
AGATTTCCTCCCTGATGGAGAAGTTTGAATCGCAGTTCGAAGACCTGGAC
GTCCAGAGCTCGGTAATGGAGGGCACCATGTCCGACACGGTAACCACCTC
GGTGCCTCAGGGAGATGTCGACAATCTGCTCCAGCAAGTGGCCGACGAGG
CTGGCCTCGAACTCAACATGGAGCTGCCCAGCGGAGTTCAGAGCCAATCC
GTTGGAGCCTCGACAGCAGTGTCCCAAGAGCAAGACGAGCTCACCCAGCG
ACTGGCACGTCTCCGCCAGGCTGAATAAAAGCTTTCTAGACC

BS06036.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4108-PA 612 Chmp1-RA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
Chmp1-RB 1096 CG4108-RB 157..774 13..630 3090 100 Plus
Chmp1-RA 847 CG4108-RA 157..774 13..630 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18683217..18683808 630..39 2960 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:54:53 has no hits.

BS06036.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:13 Download gff for BS06036.5prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-PA 1..612 17..628 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:11 Download gff for BS06036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4108-PA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:12:17 Download gff for BS06036.5prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 157..774 13..630 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:52 Download gff for BS06036.5prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 157..774 13..630 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:52 Download gff for BS06036.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18683217..18683808 39..630 100 <- Minus
3L 18683880..18683905 13..38 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:12:17 Download gff for BS06036.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18676317..18676908 39..630 100 <- Minus
arm_3L 18676980..18677005 13..38 100   Minus

BS06036.complete Sequence

644 bp (644 high quality bases) assembled on 2005-12-09

> BS06036.complete
GAAGTTATCAGTCGACATGTCTACGAGTTCCATGGAAAAACACCTTTTCA
ATCTAAAGTTTGCCGTAAAGGAATTGGAACGAAACTCAAAGAAATGTGAG
AAGGAGGAGAAGCTGGAGAAGGCAAAGGCCAAGAAGGCGATTCAGAAGGG
CAACATGGACGTGGCCCGCATCCACGCAGAGAATGCGATCCGCCAGAAGA
ACCAGGCGGTTAACTACCTCAGGATGAGTGCCCGAGTGGATGCAGTGGCC
AGTAGGGTTCAGTCCGCACTCACCACCCGCAAGGTCACCGGCTCCATGGC
CGGCGTGGTCAAGGCCATGGATGCAGCTATGAAGGGTATGAACCTGGAGA
AGATTTCCTCCCTGATGGAGAAGTTTGAATCGCAGTTCGAAGACCTGGAC
GTCCAGAGCTCGGTAATGGAGGGCACCATGTCCGACACGGTAACCACCTC
GGTGCCTCAGGGAGATGTCGACAATCTGCTCCAGCAAGTGGCCGACGAGG
CTGGCCTCGAACTCAACATGGAGCTGCCCAGCGGAGTTCAGAGCCAATCC
GTTGGAGCCTCGACAGCAGTGTCCCAAGAGCAAGACGAGCTCACCCAGCG
ACTGGCACGTCTCCGCCAGGCTGAATAAAAGCTTTCTAGACCAT

BS06036.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Chmp1-RB 612 CG4108-PB 1..612 17..628 3060 100 Plus
Chmp1-RA 612 CG4108-PA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Chmp1-RB 1096 CG4108-RB 157..774 13..630 3090 100 Plus
Chmp1-RA 847 CG4108-RA 157..774 13..630 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18683217..18683808 630..39 2960 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:02:13 has no hits.

BS06036.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:38 Download gff for BS06036.complete
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:37 Download gff for BS06036.complete
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 155..772 13..630 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:50 Download gff for BS06036.complete
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 161..770 17..626 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:39 Download gff for BS06036.complete
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 155..772 13..630 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:52 Download gff for BS06036.complete
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 161..770 17..626 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:52 Download gff for BS06036.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18683221..18683808 39..626 100 <- Minus
3L 18683880..18683901 17..38 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:50 Download gff for BS06036.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18676321..18676908 39..626 100 <- Minus
arm_3L 18676980..18677001 17..38 100   Minus

BS06036.pep Sequence

Translation from 16 to 627

> BS06036.pep
MSTSSMEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVA
RIHAENAIRQKNQAVNYLRMSARVDAVASRVQSALTTRKVTGSMAGVVKA
MDAAMKGMNLEKISSLMEKFESQFEDLDVQSSVMEGTMSDTVTTSVPQGD
VDNLLQQVADEAGLELNMELPSGVQSQSVGASTAVSQEQDELTQRLARLR
QAE*

BS06036.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Chmp1-PB 203 CG4108-PB 1..203 1..203 982 100 Plus
Chmp1-PA 203 CG4108-PA 1..203 1..203 982 100 Plus
Vps2-PA 256 CG14542-PA 15..201 6..189 237 28.3 Plus
CHMP2B-PA 212 CG4618-PA 22..212 12..202 160 19.9 Plus