Clone BS06038 Report

Search the DGRC for BS06038

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptfln-RA
Protein status:BS06038.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06038.3prime Sequence

579 bp (578 high quality bases) assembled on 2005-12-03

> BS06038.3prime
ATGGTCTAGAAAGCTTCTAAAGGACACTGGCATACCTTTGGTTGATATAT
GCCTTGGTGTGGTAATTATAAGTTCTTATCGAGGCCGCCAGTGTTTGAAT
TAGTTGTTTGTCCCTCTTTGCCGGTGCATACGAATCAATGTCACTGCCAC
TGATATTCCGTGTGCGCAGGACACGTTCCGCCCACGTCTGTGGTCTTGGT
ATTTCCCGGGCCACTCCAGTTTGTTTTTTGTCGATATAGTCAATTACATC
ATCGTAATAGTTGGTTCTGTAGTTGTACATGTATTTGTATTGCAGAAACT
TCGGCCTGACCCAGTGGCGGTAGAGCTGCACCGGTTTCCTGTAACCATCG
TCTTCTGGCGGAGGCGGCGGTGCTTTGATTTCTTCTACCTCTTCCGGAGC
AGCCTCCTCGTTGGCCGGAGTGCCAGCCACGACGCTATCAGCCTTGTGAT
CGGATGCCACACTCGGTGCTTTTGAGGGTGGGGCCGGAGTGCCCGCCTGG
GTGGATGCCGCCTTCTCCTCCTCGCCGCCGTCGTCGAAACCCCATGGATC
TTCTTCGTCTGCCATGTCGACTGATAACT

BS06038.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7445-PA 549 fln-RA 1..549 565..17 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
fln-RB 1228 CG7445-RB 277..825 565..17 2745 100 Minus
fln-RA 1028 CG7445-RA 77..625 565..17 2745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19990370..19990630 305..565 1305 100 Plus
3L 28110227 3L 19990149..19990308 150..309 800 100 Plus
3L 28110227 3L 19989954..19990090 17..153 685 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:51:33 has no hits.

BS06038.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:14 Download gff for BS06038.3prime
Subject Subject Range Query Range Percent Splice Strand
fln-PA 1..549 17..565 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:13 Download gff for BS06038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7445-PA 1..549 17..565 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:48 Download gff for BS06038.3prime
Subject Subject Range Query Range Percent Splice Strand
fln-RA 27..589 13..576 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:41 Download gff for BS06038.3prime
Subject Subject Range Query Range Percent Splice Strand
fln-RA 68..630 13..576 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:41 Download gff for BS06038.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19989949..19990086 13..149 99 <- Plus
3L 19990149..19990304 150..305 100 <- Plus
3L 19990371..19990641 306..579 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:48 Download gff for BS06038.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19983049..19983186 13..149 99 <- Plus
arm_3L 19983471..19983741 306..579 98   Plus
arm_3L 19983249..19983404 150..305 100 <- Plus

BS06038.5prime Sequence

579 bp (578 high quality bases) assembled on 2005-12-03

> BS06038.5prime
GAAGTTATCAGTCGACATGGCAGACGAAGAAGATCCATGGGGTTTCGACG
ACGGCGGCGAGGAGGAGAAGGCGGCATCCACCCAGGCGGGCACTCCGGCC
CCACCCTCAAAAGCACCGAGTGTGGCATCCGATCACAAGGCTGATAGCGT
CGTGGCTGGCACTCCGGCCAACGAGGAGGCTGCTCCGGAAGAGGTAGAAG
AAATCAAAGCACCGCCGCCTCCGCCAGAAGACGATGGTTACAGGAAACCG
GTGCAGCTCTACCGCCACTGGGTCAGGCCGAAGTTTCTGCAATACAAATA
CATGTACAACTACAGAACCAACTATTACGATGATGTAATTGACTATATCG
ACAAAAAACAAACTGGAGTGGCCCGGGAAATACCAAGACCACAGACGTGG
GCGGAACGTGTCCTGCGCACACGGAATATCAGTGGCAGTGACATTGATTC
GTATGCACCGGCAAAGAGGGACAAACAACTAATTCAAACACTGGCGGCCT
CGATAAGAACTTATAATTACCACACCAAGGCATATATCAACCAAAGGTAT
GCCAGTGTCCTTTAGAAGCTTTCTAGACC

BS06038.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7445-PA 549 fln-RA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
fln-RB 1228 CG7445-RB 277..825 17..565 2745 100 Plus
fln-RA 1028 CG7445-RA 77..625 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19990370..19990630 277..17 1305 100 Minus
3L 28110227 3L 19990149..19990308 432..273 800 100 Minus
3L 28110227 3L 19989954..19990090 565..429 685 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:08:25 has no hits.

BS06038.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:15 Download gff for BS06038.5prime
Subject Subject Range Query Range Percent Splice Strand
fln-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:14 Download gff for BS06038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7445-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:08:11 Download gff for BS06038.5prime
Subject Subject Range Query Range Percent Splice Strand
fln-RA 27..589 6..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:37:13 Download gff for BS06038.5prime
Subject Subject Range Query Range Percent Splice Strand
fln-RA 68..630 6..569 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:37:13 Download gff for BS06038.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19990371..19990641 4..276 98   Minus
3L 19989949..19990086 433..569 99 <- Minus
3L 19990149..19990304 277..432 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:08:11 Download gff for BS06038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19983049..19983186 433..569 99 <- Minus
arm_3L 19983249..19983404 277..432 100 <- Minus
arm_3L 19983471..19983741 4..276 98   Minus

BS06038.complete Sequence

581 bp (581 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635325

> BS06038.complete
GAAGTTATCAGTCGACATGGCAGACGAAGAAGATCCATGGGGTTTCGACG
ACGGCGGCGAGGAGGAGAAGGCGGCATCCACCCAGGCGGGCACTCCGGCC
CCACCCTCAAAAGCACCGAGTGTGGCATCCGATCACAAGGCTGATAGCGT
CGTGGCTGGCACTCCGGCCAACGAGGAGGCTGCTCCGGAAGAGGTAGAAG
AAATCAAAGCACCGCCGCCTCCGCCAGAAGACGATGGTTACAGGAAACCG
GTGCAGCTCTACCGCCACTGGGTCAGGCCGAAGTTTCTGCAATACAAATA
CATGTACAACTACAGAACCAACTATTACGATGATGTAATTGACTATATCG
ACAAAAAACAAACTGGAGTGGCCCGGGAAATACCAAGACCACAGACGTGG
GCGGAACGTGTCCTGCGCACACGGAATATCAGTGGCAGTGACATTGATTC
GTATGCACCGGCAAAGAGGGACAAACAACTAATTCAAACACTGGCGGCCT
CGATAAGAACTTATAATTACCACACCAAGGCATATATCAACCAAAGGTAT
GCCAGTGTCCTTTAGAAGCTTTCTAGACCAT

BS06038.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
fln-RB 549 CG7445-PB 1..549 17..565 2745 100 Plus
fln-RA 549 CG7445-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
fln-RB 1228 CG7445-RB 277..825 17..565 2745 100 Plus
fln-RA 1028 CG7445-RA 77..625 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19990370..19990630 277..17 1305 100 Minus
3L 28110227 3L 19990149..19990308 432..273 800 100 Minus
3L 28110227 3L 19989954..19990090 565..429 685 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:56:32 has no hits.

BS06038.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:40 Download gff for BS06038.complete
Subject Subject Range Query Range Percent Splice Strand
fln-RA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:38 Download gff for BS06038.complete
Subject Subject Range Query Range Percent Splice Strand
fln-RA 15..577 6..569 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:55 Download gff for BS06038.complete
Subject Subject Range Query Range Percent Splice Strand
fln-RA 36..584 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:40 Download gff for BS06038.complete
Subject Subject Range Query Range Percent Splice Strand
fln-RA 15..577 6..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:37 Download gff for BS06038.complete
Subject Subject Range Query Range Percent Splice Strand
fln-RA 77..625 17..565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:37 Download gff for BS06038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19989954..19990086 433..565 100 <- Minus
3L 19990371..19990630 17..276 100   Minus
3L 19990149..19990304 277..432 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:55 Download gff for BS06038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19983054..19983186 433..565 100 <- Minus
arm_3L 19983249..19983404 277..432 100 <- Minus
arm_3L 19983471..19983730 17..276 100   Minus

BS06038.pep Sequence

Translation from 16 to 564

> BS06038.pep
MADEEDPWGFDDGGEEEKAASTQAGTPAPPSKAPSVASDHKADSVVAGTP
ANEEAAPEEVEEIKAPPPPPEDDGYRKPVQLYRHWVRPKFLQYKYMYNYR
TNYYDDVIDYIDKKQTGVAREIPRPQTWAERVLRTRNISGSDIDSYAPAK
RDKQLIQTLAASIRTYNYHTKAYINQRYASVL*

BS06038.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
fln-PB 182 CG7445-PB 1..182 1..182 974 100 Plus
fln-PA 182 CG7445-PA 1..182 1..182 974 100 Plus