Clone Sequence Records
BS06038.3prime Sequence
579 bp (578 high quality bases) assembled on 2005-12-03
> BS06038.3prime
ATGGTCTAGAAAGCTTCTAAAGGACACTGGCATACCTTTGGTTGATATAT
GCCTTGGTGTGGTAATTATAAGTTCTTATCGAGGCCGCCAGTGTTTGAAT
TAGTTGTTTGTCCCTCTTTGCCGGTGCATACGAATCAATGTCACTGCCAC
TGATATTCCGTGTGCGCAGGACACGTTCCGCCCACGTCTGTGGTCTTGGT
ATTTCCCGGGCCACTCCAGTTTGTTTTTTGTCGATATAGTCAATTACATC
ATCGTAATAGTTGGTTCTGTAGTTGTACATGTATTTGTATTGCAGAAACT
TCGGCCTGACCCAGTGGCGGTAGAGCTGCACCGGTTTCCTGTAACCATCG
TCTTCTGGCGGAGGCGGCGGTGCTTTGATTTCTTCTACCTCTTCCGGAGC
AGCCTCCTCGTTGGCCGGAGTGCCAGCCACGACGCTATCAGCCTTGTGAT
CGGATGCCACACTCGGTGCTTTTGAGGGTGGGGCCGGAGTGCCCGCCTGG
GTGGATGCCGCCTTCTCCTCCTCGCCGCCGTCGTCGAAACCCCATGGATC
TTCTTCGTCTGCCATGTCGACTGATAACT
BS06038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7445-PA | 549 | fln-RA | 1..549 | 565..17 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fln-RB | 1228 | CG7445-RB | 277..825 | 565..17 | 2745 | 100 | Minus |
fln-RA | 1028 | CG7445-RA | 77..625 | 565..17 | 2745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19990370..19990630 | 305..565 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 19990149..19990308 | 150..309 | 800 | 100 | Plus |
3L | 28110227 | 3L | 19989954..19990090 | 17..153 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:51:33 has no hits.
BS06038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:14 Download gff for
BS06038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:13 Download gff for
BS06038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7445-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:48 Download gff for
BS06038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 27..589 | 13..576 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:41 Download gff for
BS06038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 68..630 | 13..576 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:41 Download gff for
BS06038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19989949..19990086 | 13..149 | 99 | <- | Plus |
3L | 19990149..19990304 | 150..305 | 100 | <- | Plus |
3L | 19990371..19990641 | 306..579 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:48 Download gff for
BS06038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19983049..19983186 | 13..149 | 99 | <- | Plus |
arm_3L | 19983471..19983741 | 306..579 | 98 | | Plus |
arm_3L | 19983249..19983404 | 150..305 | 100 | <- | Plus |
BS06038.5prime Sequence
579 bp (578 high quality bases) assembled on 2005-12-03
> BS06038.5prime
GAAGTTATCAGTCGACATGGCAGACGAAGAAGATCCATGGGGTTTCGACG
ACGGCGGCGAGGAGGAGAAGGCGGCATCCACCCAGGCGGGCACTCCGGCC
CCACCCTCAAAAGCACCGAGTGTGGCATCCGATCACAAGGCTGATAGCGT
CGTGGCTGGCACTCCGGCCAACGAGGAGGCTGCTCCGGAAGAGGTAGAAG
AAATCAAAGCACCGCCGCCTCCGCCAGAAGACGATGGTTACAGGAAACCG
GTGCAGCTCTACCGCCACTGGGTCAGGCCGAAGTTTCTGCAATACAAATA
CATGTACAACTACAGAACCAACTATTACGATGATGTAATTGACTATATCG
ACAAAAAACAAACTGGAGTGGCCCGGGAAATACCAAGACCACAGACGTGG
GCGGAACGTGTCCTGCGCACACGGAATATCAGTGGCAGTGACATTGATTC
GTATGCACCGGCAAAGAGGGACAAACAACTAATTCAAACACTGGCGGCCT
CGATAAGAACTTATAATTACCACACCAAGGCATATATCAACCAAAGGTAT
GCCAGTGTCCTTTAGAAGCTTTCTAGACC
BS06038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7445-PA | 549 | fln-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fln-RB | 1228 | CG7445-RB | 277..825 | 17..565 | 2745 | 100 | Plus |
fln-RA | 1028 | CG7445-RA | 77..625 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19990370..19990630 | 277..17 | 1305 | 100 | Minus |
3L | 28110227 | 3L | 19990149..19990308 | 432..273 | 800 | 100 | Minus |
3L | 28110227 | 3L | 19989954..19990090 | 565..429 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:08:25 has no hits.
BS06038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:15 Download gff for
BS06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:14 Download gff for
BS06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7445-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:08:11 Download gff for
BS06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 27..589 | 6..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:37:13 Download gff for
BS06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 68..630 | 6..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:37:13 Download gff for
BS06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19990371..19990641 | 4..276 | 98 | | Minus |
3L | 19989949..19990086 | 433..569 | 99 | <- | Minus |
3L | 19990149..19990304 | 277..432 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:08:11 Download gff for
BS06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19983049..19983186 | 433..569 | 99 | <- | Minus |
arm_3L | 19983249..19983404 | 277..432 | 100 | <- | Minus |
arm_3L | 19983471..19983741 | 4..276 | 98 | | Minus |
BS06038.complete Sequence
581 bp (581 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635325
> BS06038.complete
GAAGTTATCAGTCGACATGGCAGACGAAGAAGATCCATGGGGTTTCGACG
ACGGCGGCGAGGAGGAGAAGGCGGCATCCACCCAGGCGGGCACTCCGGCC
CCACCCTCAAAAGCACCGAGTGTGGCATCCGATCACAAGGCTGATAGCGT
CGTGGCTGGCACTCCGGCCAACGAGGAGGCTGCTCCGGAAGAGGTAGAAG
AAATCAAAGCACCGCCGCCTCCGCCAGAAGACGATGGTTACAGGAAACCG
GTGCAGCTCTACCGCCACTGGGTCAGGCCGAAGTTTCTGCAATACAAATA
CATGTACAACTACAGAACCAACTATTACGATGATGTAATTGACTATATCG
ACAAAAAACAAACTGGAGTGGCCCGGGAAATACCAAGACCACAGACGTGG
GCGGAACGTGTCCTGCGCACACGGAATATCAGTGGCAGTGACATTGATTC
GTATGCACCGGCAAAGAGGGACAAACAACTAATTCAAACACTGGCGGCCT
CGATAAGAACTTATAATTACCACACCAAGGCATATATCAACCAAAGGTAT
GCCAGTGTCCTTTAGAAGCTTTCTAGACCAT
BS06038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fln-RB | 549 | CG7445-PB | 1..549 | 17..565 | 2745 | 100 | Plus |
fln-RA | 549 | CG7445-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fln-RB | 1228 | CG7445-RB | 277..825 | 17..565 | 2745 | 100 | Plus |
fln-RA | 1028 | CG7445-RA | 77..625 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19990370..19990630 | 277..17 | 1305 | 100 | Minus |
3L | 28110227 | 3L | 19990149..19990308 | 432..273 | 800 | 100 | Minus |
3L | 28110227 | 3L | 19989954..19990090 | 565..429 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:56:32 has no hits.
BS06038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:40 Download gff for
BS06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:38 Download gff for
BS06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 15..577 | 6..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:55 Download gff for
BS06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 36..584 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:40 Download gff for
BS06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 15..577 | 6..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:37 Download gff for
BS06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 77..625 | 17..565 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:37 Download gff for
BS06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19989954..19990086 | 433..565 | 100 | <- | Minus |
3L | 19990371..19990630 | 17..276 | 100 | | Minus |
3L | 19990149..19990304 | 277..432 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:55 Download gff for
BS06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19983054..19983186 | 433..565 | 100 | <- | Minus |
arm_3L | 19983249..19983404 | 277..432 | 100 | <- | Minus |
arm_3L | 19983471..19983730 | 17..276 | 100 | | Minus |
BS06038.pep Sequence
Translation from 16 to 564
> BS06038.pep
MADEEDPWGFDDGGEEEKAASTQAGTPAPPSKAPSVASDHKADSVVAGTP
ANEEAAPEEVEEIKAPPPPPEDDGYRKPVQLYRHWVRPKFLQYKYMYNYR
TNYYDDVIDYIDKKQTGVAREIPRPQTWAERVLRTRNISGSDIDSYAPAK
RDKQLIQTLAASIRTYNYHTKAYINQRYASVL*
BS06038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fln-PB | 182 | CG7445-PB | 1..182 | 1..182 | 974 | 100 | Plus |
fln-PA | 182 | CG7445-PA | 1..182 | 1..182 | 974 | 100 | Plus |