Clone Sequence Records
BS06039.3prime Sequence
844 bp (818 high quality bases) assembled on 2005-12-03
> BS06039.3prime
ATGGTCTAGAAAGCTTCTAGATTTTGGGATCCTGGGGCGTAAGCTTGACA
ATCTTCACGGACTCCTCCCAGATCTTGAGACCCTTCTCCTCATCGAGGGC
AGCAGCATTAAGGGTGGCCTCCTTGCAGTCCATGAAGTACTTTCCAGACA
CATTGGCCACCTCATTGGATGTGGCCAAATAGATAGTGGTCTGGGCGCCG
GCCTTGGTGGTCTTGAAGAATCCCTTGGTGATGGCCATCATGGGCAAGTT
GAGGGGGAAGGGAACGTTACGCCAAATGCCCGAGTCGATCATGCCGGGAT
GCAGGAAATTCACTGTAACCTTGGTGCCCTCCAGCCGCTTGGCCAGCTCC
CGGGCAAAGTAGATGTTCGCAAACTTGGACACATAGTATAAGTAGGCAGC
CGGGAAAGTGCCGATGGGATTGAGCTTGGCCAGGTTAACCGACGACAGGC
GGTACAGCTCCGAGGCTACGATGACTATGCGAGCCGGCGCGCTCTTCTTT
AGTACATCGATGAGCAGATGCGTCAGCAGGAAGGGTCCATAGTGATTGGT
GGCCATGGTCAGCTCCACGCCATCCTCACTCGTCTGTCCGCGGAAGGCCA
GAGCCATGCCGGCATTGTGGATAAGCACATCGATCTTGGGCTCGGTCTTC
ACAATGTCAGCGGCGAACTCACGGACGGACTTCTGGGAGCCCAGATCCAG
TTTCTTGACTAGGATCTTGTTGTTCTTCGTCTCCTTGACGATCTCATCCT
TCACTGCATTGGCAGTCTCCAGGTTCCTGCAGGCCATGATGATGCGGGCT
CCACGTCCAGCCAGATCCTTGGCCGTCTCCTTGCCAATTCCGCT
BS06039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-PA | 864 | CG7675-RA | 37..864 | 844..17 | 4140 | 100 | Minus |
| CG7675-PB | 1011 | CG7675-RB | 184..1011 | 844..17 | 4140 | 100 | Minus |
| CG7675-PC | 864 | CG7675-RC | 37..864 | 844..17 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-RE | 1101 | CG7675-RE | 161..989 | 844..16 | 4145 | 100 | Minus |
| CG7675-RD | 1224 | CG7675-RD | 284..1112 | 844..16 | 4145 | 100 | Minus |
| CG7675-RC | 1082 | CG7675-RC | 142..970 | 844..16 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18378236..18378968 | 16..748 | 3665 | 100 | Plus |
| 3R | 32079331 | 3R | 18379226..18379322 | 748..844 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:07:28 has no hits.
BS06039.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:16 Download gff for
BS06039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-PC | 37..864 | 17..844 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:16 Download gff for
BS06039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-PC | 37..864 | 17..844 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:42 Download gff for
BS06039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RA | 187..1024 | 8..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:01:58 Download gff for
BS06039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RC | 142..979 | 8..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:01:58 Download gff for
BS06039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18378227..18378967 | 8..747 | 99 | <- | Plus |
| 3R | 18379226..18379322 | 748..844 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:42 Download gff for
BS06039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14203949..14204689 | 8..747 | 99 | <- | Plus |
| arm_3R | 14204948..14205044 | 748..844 | 100 | | Plus |
BS06039.5prime Sequence
893 bp (805 high quality bases) assembled on 2005-12-03
> BS06039.5prime
GAAGTTATCAGTCGACATGGAGGGCAAGACAGTCATTATCACAGGCGCCA
ACAGCGGAATTGGCAAGGAGACGGCCAAGGATCTGGCTGGACGTGGAGCC
CGCATCATCATGGCCTGCAGGAACCTGGAGACTGCCAATGCAGTGAAGGA
TGAGATCGTCAAGGAGACGAAGAACAACAAGATCCTAGTCAAGAAACTGG
ATCTGGGCTCCCAGAAGTCCGTCCGTGAGTTCGCCGCTGACATTGTGAAG
ACCGAGCCCAAGATCGATGTGCTTATCCACAATGCCGGCATGGCTCTGGC
CTTCCGCGGACAGACGAGTGAGGATGGCGTGGAGCTGACCATGGCCACCA
ATCACTATGGACCCTTCCTGCTGACGCATCTGCTCATCGATGTACTAAAG
AAGAGCGCGCCGGCTCGCATAGTCATCGTAGCCTCGGAGCTGTACCGCCT
GTCGTCGGTTAACCTGGCCAAGCTCAATCCCATCGGCACTTTCCCGGCTG
CCTACTTATACTATGTGTCCAAGTTTGCGAACATCTACTTTGCCCGGGAG
CTGGCCAAGCGGCTGGAGGGCACCAAGGTTACAGTGAATTTCCTGCATCC
CGGCATGATCGACTCGGGCATTTGGCGTAACGTTCCCTTCCCCCTCAACT
TGCCCATGATGGCCATCACCAAGGGATTCTTCAAGACCACCAAGGCCGGC
GCCCAGACCACTATCTATTTGGCCACATCCAATGAGGTGGCCAATGTGTC
TGGAAAGTACTTCATGGACTGCAAGGAGGCCACCCTTAATGCTGCTGCCC
TCGATGAGGAGAAGGGTCTCAAGATCTGGGAGGAGTCCGTGAAGATTTGT
CAGCTTTACGCCCAGGATCCCAAATCTAGAAGCTTTCTAGACC
BS06039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-PA | 864 | CG7675-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
| CG7675-PB | 1011 | CG7675-RB | 148..978 | 17..847 | 4155 | 100 | Plus |
| CG7675-PC | 864 | CG7675-RC | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-RE | 1101 | CG7675-RE | 125..989 | 17..880 | 4210 | 99.4 | Plus |
| CG7675-RD | 1224 | CG7675-RD | 248..1112 | 17..880 | 4210 | 99.4 | Plus |
| CG7675-RC | 1082 | CG7675-RC | 106..970 | 17..880 | 4210 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18378243..18378968 | 874..149 | 3510 | 98.9 | Minus |
| 3R | 32079331 | 3R | 18379226..18379358 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:08:14 has no hits.
BS06039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:17 Download gff for
BS06039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-PC | 1..864 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:17 Download gff for
BS06039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-PC | 1..864 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:08:09 Download gff for
BS06039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RA | 142..1024 | 9..888 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:36:28 Download gff for
BS06039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RC | 97..979 | 9..888 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:36:28 Download gff for
BS06039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18379226..18379367 | 9..149 | 97 | | Minus |
| 3R | 18378227..18378967 | 150..888 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:08:09 Download gff for
BS06039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14203949..14204689 | 150..888 | 98 | <- | Minus |
| arm_3R | 14204948..14205089 | 9..149 | 97 | | Minus |
BS06039.complete Sequence
896 bp (896 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635326
> BS06039.complete
GAAGTTATCAGTCGACATGGAGGGCAAGACAGTCATTATCACAGGCGCCA
ACAGCGGAATTGGCAAGGAGACGGCCAAGGATCTGGCTGGACGTGGAGCC
CGCATCATCATGGCCTGCAGGAACCTGGAGACTGCCAATGCAGTGAAGGA
TGAGATCGTCAAGGAGACGAAGAACAACAAGATCCTAGTCAAGAAACTGG
ATCTGGGCTCCCAGAAGTCCGTCCGTGAGTTCGCCGCTGACATTGTGAAG
ACCGAGCCCAAGATCGATGTGCTTATCCACAATGCCGGCATGGCTCTGGC
CTTCCGCGGACAGACGAGTGAGGATGGCGTGGAGCTGACCATGGCCACCA
ATCACTATGGACCCTTCCTGCTGACGCATCTGCTCATCGATGTACTAAAG
AAGAGCGCGCCGGCTCGCATAGTCATCGTAGCCTCGGAGCTGTACCGCCT
GTCGTCGGTTAACCTGGCCAAGCTCAATCCCATCGGCACTTTCCCGGCTG
CCTACTTATACTATGTGTCCAAGTTTGCGAACATCTACTTTGCCCGGGAG
CTGGCCAAGCGGCTGGAGGGCACCAAGGTTACAGTGAATTTCCTGCATCC
CGGCATGATCGACTCGGGCATTTGGCGTAACGTTCCCTTCCCCCTCAACT
TGCCCATGATGGCCATCACCAAGGGATTCTTCAAGACCACCAAGGCCGGC
GCCCAGACCACTATCTATTTGGCCACATCCAATGAGGTGGCCAATGTGTC
TGGAAAGTACTTCATGGACTGCAAGGAGGCCACCCTTAATGCTGCTGCCC
TCGATGAGGAGAAGGGTCTCAAGATCTGGGAGGAGTCCGTGAAGATTGTC
AAGCTTACGCCCCAGGATCCCAAAATCTAGAAGCTTTCTAGACCAT
BS06039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-RE | 864 | CG7675-PE | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG7675-RD | 1011 | CG7675-PD | 148..1011 | 17..880 | 4320 | 100 | Plus |
| CG7675-RC | 864 | CG7675-PC | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-RE | 1101 | CG7675-RE | 125..989 | 17..881 | 4325 | 100 | Plus |
| CG7675-RD | 1224 | CG7675-RD | 248..1112 | 17..881 | 4325 | 100 | Plus |
| CG7675-RC | 1082 | CG7675-RC | 106..970 | 17..881 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18378236..18378968 | 881..149 | 3665 | 100 | Minus |
| 3R | 32079331 | 3R | 18379226..18379358 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:39:21 has no hits.
BS06039.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:41 Download gff for
BS06039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RC | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:40 Download gff for
BS06039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RC | 94..976 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:51 Download gff for
BS06039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RA | 151..1014 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:41 Download gff for
BS06039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RC | 94..976 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:53 Download gff for
BS06039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RC | 106..969 | 17..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:53 Download gff for
BS06039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18378237..18378967 | 150..880 | 100 | <- | Minus |
| 3R | 18379226..18379358 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:51 Download gff for
BS06039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14203959..14204689 | 150..880 | 100 | <- | Minus |
| arm_3R | 14204948..14205080 | 17..149 | 100 | | Minus |
BS06039.pep Sequence
Translation from 16 to 879
> BS06039.pep
MEGKTVIITGANSGIGKETAKDLAGRGARIIMACRNLETANAVKDEIVKE
TKNNKILVKKLDLGSQKSVREFAADIVKTEPKIDVLIHNAGMALAFRGQT
SEDGVELTMATNHYGPFLLTHLLIDVLKKSAPARIVIVASELYRLSSVNL
AKLNPIGTFPAAYLYYVSKFANIYFARELAKRLEGTKVTVNFLHPGMIDS
GIWRNVPFPLNLPMMAITKGFFKTTKAGAQTTIYLATSNEVANVSGKYFM
DCKEATLNAAALDEEKGLKIWEESVKIVKLTPQDPKI*
BS06039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-PE | 287 | CG7675-PE | 1..287 | 1..287 | 1448 | 100 | Plus |
| CG7675-PC | 287 | CG7675-PC | 1..287 | 1..287 | 1448 | 100 | Plus |
| CG7675-PA | 287 | CG7675-PA | 1..287 | 1..287 | 1448 | 100 | Plus |
| CG7675-PD | 336 | CG7675-PD | 50..336 | 1..287 | 1448 | 100 | Plus |
| CG7675-PB | 336 | CG7675-PB | 50..336 | 1..287 | 1448 | 100 | Plus |
