Clone Sequence Records
BS06042.3prime Sequence
630 bp (629 high quality bases) assembled on 2005-12-03
> BS06042.3prime
ATGGTCTAGAAAGCTTTCAATACGAGCAGCCAATGGCCACGGTGAGGAAG
TCCTCGAACCCAATGGTGATGGTTCCATTCTGCTGGGTGTCGCGCTGCCT
GAAGGCCTCCGTGAAACGCTGCACCTGCACGCAGAGCACTATGAACTGAT
CCACGGACACCTCTTTGTGGCCCTGGGGGTCGCTCTTCTTCACCAGGAAG
TTTATGAATTCGGGCGAGAATCGAAAGCCCATCTGGGTGAAGGCTTGGGT
CAGCTCCTGTTCCTCGATATGTCCAGAGGAGTCCTGATCGTAGGTCTTGA
AGACTTGCAGCCATTGGTTGATGTAGTTGTAGAGCTTCTCGAACTCATAG
ATATCGATGGTACCACTGGCGTCGTTGTCGAACATGCTTATCATCAGCTT
GCAGGCATTATCCGAGAAGTGATCGCCACGCCCATTCACCAGGGCCGCCT
GCAACTCGGAAGCGTTTATCTTTCCAGATCGGTCGCGGTCCACCATGGAG
AACCATTGCTGTGCCTGCGGAGACACCTGGGCATTCTGCGGCGGAAATGC
TCCTGGCGGCGGGGCATAGCCACCACCGGGCTGGGCATACGGGTTATAGC
CTTGTCCATAAGACATGTCGACTGATAACT
BS06042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-PA | 600 | CG17765-RA | 1..600 | 616..17 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-RA | 989 | CG17765-RA | 93..695 | 616..14 | 3015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10481361..10481592 | 245..14 | 1160 | 100 | Minus |
2R | 25286936 | 2R | 10480323..10480543 | 607..387 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 10481090..10481169 | 387..308 | 400 | 100 | Minus |
2R | 25286936 | 2R | 10481226..10481290 | 308..244 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:36:59 has no hits.
BS06042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:22 Download gff for
BS06042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-PA | 1..600 | 17..616 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:24 Download gff for
BS06042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-PA | 1..600 | 17..616 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:56:10 Download gff for
BS06042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..695 | 14..616 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:09:48 Download gff for
BS06042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..695 | 14..616 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:09:48 Download gff for
BS06042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10480323..10480542 | 388..607 | 100 | -> | Minus |
2R | 10481090..10481169 | 308..387 | 100 | -> | Minus |
2R | 10481227..10481290 | 244..307 | 100 | -> | Minus |
2R | 10481363..10481592 | 14..243 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:56:10 Download gff for
BS06042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6367828..6368047 | 388..607 | 100 | -> | Minus |
arm_2R | 6368595..6368674 | 308..387 | 100 | -> | Minus |
arm_2R | 6368732..6368795 | 244..307 | 100 | -> | Minus |
arm_2R | 6368868..6369097 | 14..243 | 100 | | Minus |
BS06042.5prime Sequence
630 bp (629 high quality bases) assembled on 2005-12-03
> BS06042.5prime
GAAGTTATCAGTCGACATGTCTTATGGACAAGGCTATAACCCGTATGCCC
AGCCCGGTGGTGGCTATGCCCCGCCGCCAGGAGCATTTCCGCCGCAGAAT
GCCCAGGTGTCTCCGCAGGCACAGCAATGGTTCTCCATGGTGGACCGCGA
CCGATCTGGAAAGATAAACGCTTCCGAGTTGCAGGCGGCCCTGGTGAATG
GGCGTGGCGATCACTTCTCGGATAATGCCTGCAAGCTGATGATAAGCATG
TTCGACAACGACGCCAGTGGTACCATCGATATCTATGAGTTCGAGAAGCT
CTACAACTACATCAACCAATGGCTGCAAGTCTTCAAGACCTACGATCAGG
ACTCCTCTGGACATATCGAGGAACAGGAGCTGACCCAAGCCTTCACCCAG
ATGGGCTTTCGATTCTCGCCCGAATTCATAAACTTCCTGGTGAAGAAGAG
CGACCCCCAGGGCCACAAAGAGGTGTCCGTGGATCAGTTCATAGTGCTCT
GCGTGCAGGTGCAGCGTTTCACGGAGGCCTTCAGGCAGCGCGACACCCAG
CAGAATGGAACCATCACCATTGGGTTCGAGGACTTCCTCACCGTGGCCAT
TGGCTGCTCGTATTGAAAGCTTTCTAGACC
BS06042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-PA | 600 | CG17765-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-RA | 989 | CG17765-RA | 93..695 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10481361..10481592 | 388..619 | 1160 | 100 | Plus |
2R | 25286936 | 2R | 10480323..10480543 | 26..246 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 10481090..10481169 | 246..325 | 400 | 100 | Plus |
2R | 25286936 | 2R | 10481226..10481290 | 325..389 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:02:55 has no hits.
BS06042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:23 Download gff for
BS06042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:26 Download gff for
BS06042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:54:25 Download gff for
BS06042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..695 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:55 Download gff for
BS06042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..695 | 17..619 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:55 Download gff for
BS06042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10480323..10480542 | 26..245 | 100 | -> | Plus |
2R | 10481090..10481169 | 246..325 | 100 | -> | Plus |
2R | 10481227..10481290 | 326..389 | 100 | -> | Plus |
2R | 10481363..10481592 | 390..619 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:54:25 Download gff for
BS06042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6368868..6369097 | 390..619 | 100 | | Plus |
arm_2R | 6367828..6368047 | 26..245 | 100 | -> | Plus |
arm_2R | 6368595..6368674 | 246..325 | 100 | -> | Plus |
arm_2R | 6368732..6368795 | 326..389 | 100 | -> | Plus |
BS06042.complete Sequence
632 bp (632 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635327
> BS06042.complete
GAAGTTATCAGTCGACATGTCTTATGGACAAGGCTATAACCCGTATGCCC
AGCCCGGTGGTGGCTATGCCCCGCCGCCAGGAGCATTTCCGCCGCAGAAT
GCCCAGGTGTCTCCGCAGGCACAGCAATGGTTCTCCATGGTGGACCGCGA
CCGATCTGGAAAGATAAACGCTTCCGAGTTGCAGGCGGCCCTGGTGAATG
GGCGTGGCGATCACTTCTCGGATAATGCCTGCAAGCTGATGATAAGCATG
TTCGACAACGACGCCAGTGGTACCATCGATATCTATGAGTTCGAGAAGCT
CTACAACTACATCAACCAATGGCTGCAAGTCTTCAAGACCTACGATCAGG
ACTCCTCTGGACATATCGAGGAACAGGAGCTGACCCAAGCCTTCACCCAG
ATGGGCTTTCGATTCTCGCCCGAATTCATAAACTTCCTGGTGAAGAAGAG
CGACCCCCAGGGCCACAAAGAGGTGTCCGTGGATCAGTTCATAGTGCTCT
GCGTGCAGGTGCAGCGTTTCACGGAGGCCTTCAGGCAGCGCGACACCCAG
CAGAATGGAACCATCACCATTGGGTTCGAGGACTTCCTCACCGTGGCCAT
TGGCTGCTCGTATTGAAAGCTTTCTAGACCAT
BS06042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-RA | 600 | CG17765-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-RA | 989 | CG17765-RA | 93..695 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10481361..10481592 | 388..619 | 1160 | 100 | Plus |
2R | 25286936 | 2R | 10480323..10480543 | 26..246 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 10481090..10481169 | 246..325 | 400 | 100 | Plus |
2R | 25286936 | 2R | 10481226..10481290 | 325..389 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:08:07 has no hits.
BS06042.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:42 Download gff for
BS06042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:42 Download gff for
BS06042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 96..698 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:08 Download gff for
BS06042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..691 | 17..615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:43 Download gff for
BS06042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 96..698 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:01 Download gff for
BS06042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..691 | 17..615 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:01 Download gff for
BS06042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10480323..10480542 | 26..245 | 100 | -> | Plus |
2R | 10481090..10481169 | 246..325 | 100 | -> | Plus |
2R | 10481227..10481290 | 326..389 | 100 | -> | Plus |
2R | 10481363..10481588 | 390..615 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:08 Download gff for
BS06042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6367828..6368047 | 26..245 | 100 | -> | Plus |
arm_2R | 6368595..6368674 | 246..325 | 100 | -> | Plus |
arm_2R | 6368732..6368795 | 326..389 | 100 | -> | Plus |
arm_2R | 6368868..6369093 | 390..615 | 100 | | Plus |
BS06042.pep Sequence
Translation from 16 to 615
> BS06042.pep
MSYGQGYNPYAQPGGGYAPPPGAFPPQNAQVSPQAQQWFSMVDRDRSGKI
NASELQAALVNGRGDHFSDNACKLMISMFDNDASGTIDIYEFEKLYNYIN
QWLQVFKTYDQDSSGHIEEQELTQAFTQMGFRFSPEFINFLVKKSDPQGH
KEVSVDQFIVLCVQVQRFTEAFRQRDTQQNGTITIGFEDFLTVAIGCSY*
BS06042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-PA | 199 | CG17765-PA | 1..199 | 1..199 | 1063 | 100 | Plus |
Alg-2-PC | 178 | CG40410-PC | 18..172 | 39..193 | 337 | 41.9 | Plus |
CalpA-PC | 828 | CG7563-PC | 699..822 | 67..191 | 204 | 30.4 | Plus |
CalpA-PB | 828 | CG7563-PB | 699..822 | 67..191 | 204 | 30.4 | Plus |
CalpA-PD | 843 | CG7563-PD | 714..837 | 67..191 | 204 | 30.4 | Plus |