Clone BS06042 Report

Search the DGRC for BS06042

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG17765-RA
Protein status:BS06042.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06042.3prime Sequence

630 bp (629 high quality bases) assembled on 2005-12-03

> BS06042.3prime
ATGGTCTAGAAAGCTTTCAATACGAGCAGCCAATGGCCACGGTGAGGAAG
TCCTCGAACCCAATGGTGATGGTTCCATTCTGCTGGGTGTCGCGCTGCCT
GAAGGCCTCCGTGAAACGCTGCACCTGCACGCAGAGCACTATGAACTGAT
CCACGGACACCTCTTTGTGGCCCTGGGGGTCGCTCTTCTTCACCAGGAAG
TTTATGAATTCGGGCGAGAATCGAAAGCCCATCTGGGTGAAGGCTTGGGT
CAGCTCCTGTTCCTCGATATGTCCAGAGGAGTCCTGATCGTAGGTCTTGA
AGACTTGCAGCCATTGGTTGATGTAGTTGTAGAGCTTCTCGAACTCATAG
ATATCGATGGTACCACTGGCGTCGTTGTCGAACATGCTTATCATCAGCTT
GCAGGCATTATCCGAGAAGTGATCGCCACGCCCATTCACCAGGGCCGCCT
GCAACTCGGAAGCGTTTATCTTTCCAGATCGGTCGCGGTCCACCATGGAG
AACCATTGCTGTGCCTGCGGAGACACCTGGGCATTCTGCGGCGGAAATGC
TCCTGGCGGCGGGGCATAGCCACCACCGGGCTGGGCATACGGGTTATAGC
CTTGTCCATAAGACATGTCGACTGATAACT

BS06042.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-PA 600 CG17765-RA 1..600 616..17 3000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-RA 989 CG17765-RA 93..695 616..14 3015 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10481361..10481592 245..14 1160 100 Minus
2R 25286936 2R 10480323..10480543 607..387 1105 100 Minus
2R 25286936 2R 10481090..10481169 387..308 400 100 Minus
2R 25286936 2R 10481226..10481290 308..244 325 100 Minus
Blast to na_te.dros performed on 2015-02-09 01:36:59 has no hits.

BS06042.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:22 Download gff for BS06042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-PA 1..600 17..616 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:24 Download gff for BS06042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-PA 1..600 17..616 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:56:10 Download gff for BS06042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..695 14..616 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:09:48 Download gff for BS06042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..695 14..616 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:09:48 Download gff for BS06042.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10480323..10480542 388..607 100 -> Minus
2R 10481090..10481169 308..387 100 -> Minus
2R 10481227..10481290 244..307 100 -> Minus
2R 10481363..10481592 14..243 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:56:10 Download gff for BS06042.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6367828..6368047 388..607 100 -> Minus
arm_2R 6368595..6368674 308..387 100 -> Minus
arm_2R 6368732..6368795 244..307 100 -> Minus
arm_2R 6368868..6369097 14..243 100   Minus

BS06042.5prime Sequence

630 bp (629 high quality bases) assembled on 2005-12-03

> BS06042.5prime
GAAGTTATCAGTCGACATGTCTTATGGACAAGGCTATAACCCGTATGCCC
AGCCCGGTGGTGGCTATGCCCCGCCGCCAGGAGCATTTCCGCCGCAGAAT
GCCCAGGTGTCTCCGCAGGCACAGCAATGGTTCTCCATGGTGGACCGCGA
CCGATCTGGAAAGATAAACGCTTCCGAGTTGCAGGCGGCCCTGGTGAATG
GGCGTGGCGATCACTTCTCGGATAATGCCTGCAAGCTGATGATAAGCATG
TTCGACAACGACGCCAGTGGTACCATCGATATCTATGAGTTCGAGAAGCT
CTACAACTACATCAACCAATGGCTGCAAGTCTTCAAGACCTACGATCAGG
ACTCCTCTGGACATATCGAGGAACAGGAGCTGACCCAAGCCTTCACCCAG
ATGGGCTTTCGATTCTCGCCCGAATTCATAAACTTCCTGGTGAAGAAGAG
CGACCCCCAGGGCCACAAAGAGGTGTCCGTGGATCAGTTCATAGTGCTCT
GCGTGCAGGTGCAGCGTTTCACGGAGGCCTTCAGGCAGCGCGACACCCAG
CAGAATGGAACCATCACCATTGGGTTCGAGGACTTCCTCACCGTGGCCAT
TGGCTGCTCGTATTGAAAGCTTTCTAGACC

BS06042.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-PA 600 CG17765-RA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-RA 989 CG17765-RA 93..695 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10481361..10481592 388..619 1160 100 Plus
2R 25286936 2R 10480323..10480543 26..246 1105 100 Plus
2R 25286936 2R 10481090..10481169 246..325 400 100 Plus
2R 25286936 2R 10481226..10481290 325..389 325 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:02:55 has no hits.

BS06042.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:23 Download gff for BS06042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:26 Download gff for BS06042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:54:25 Download gff for BS06042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..695 17..619 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:55 Download gff for BS06042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..695 17..619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:55 Download gff for BS06042.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10480323..10480542 26..245 100 -> Plus
2R 10481090..10481169 246..325 100 -> Plus
2R 10481227..10481290 326..389 100 -> Plus
2R 10481363..10481592 390..619 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:54:25 Download gff for BS06042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6368868..6369097 390..619 100   Plus
arm_2R 6367828..6368047 26..245 100 -> Plus
arm_2R 6368595..6368674 246..325 100 -> Plus
arm_2R 6368732..6368795 326..389 100 -> Plus

BS06042.complete Sequence

632 bp (632 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635327

> BS06042.complete
GAAGTTATCAGTCGACATGTCTTATGGACAAGGCTATAACCCGTATGCCC
AGCCCGGTGGTGGCTATGCCCCGCCGCCAGGAGCATTTCCGCCGCAGAAT
GCCCAGGTGTCTCCGCAGGCACAGCAATGGTTCTCCATGGTGGACCGCGA
CCGATCTGGAAAGATAAACGCTTCCGAGTTGCAGGCGGCCCTGGTGAATG
GGCGTGGCGATCACTTCTCGGATAATGCCTGCAAGCTGATGATAAGCATG
TTCGACAACGACGCCAGTGGTACCATCGATATCTATGAGTTCGAGAAGCT
CTACAACTACATCAACCAATGGCTGCAAGTCTTCAAGACCTACGATCAGG
ACTCCTCTGGACATATCGAGGAACAGGAGCTGACCCAAGCCTTCACCCAG
ATGGGCTTTCGATTCTCGCCCGAATTCATAAACTTCCTGGTGAAGAAGAG
CGACCCCCAGGGCCACAAAGAGGTGTCCGTGGATCAGTTCATAGTGCTCT
GCGTGCAGGTGCAGCGTTTCACGGAGGCCTTCAGGCAGCGCGACACCCAG
CAGAATGGAACCATCACCATTGGGTTCGAGGACTTCCTCACCGTGGCCAT
TGGCTGCTCGTATTGAAAGCTTTCTAGACCAT

BS06042.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-RA 600 CG17765-PA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-RA 989 CG17765-RA 93..695 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10481361..10481592 388..619 1160 100 Plus
2R 25286936 2R 10480323..10480543 26..246 1105 100 Plus
2R 25286936 2R 10481090..10481169 246..325 400 100 Plus
2R 25286936 2R 10481226..10481290 325..389 325 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:08:07 has no hits.

BS06042.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:42 Download gff for BS06042.complete
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:42 Download gff for BS06042.complete
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 96..698 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:08 Download gff for BS06042.complete
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..691 17..615 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:43 Download gff for BS06042.complete
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 96..698 17..619 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:01 Download gff for BS06042.complete
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..691 17..615 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:01 Download gff for BS06042.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10480323..10480542 26..245 100 -> Plus
2R 10481090..10481169 246..325 100 -> Plus
2R 10481227..10481290 326..389 100 -> Plus
2R 10481363..10481588 390..615 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:08 Download gff for BS06042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6367828..6368047 26..245 100 -> Plus
arm_2R 6368595..6368674 246..325 100 -> Plus
arm_2R 6368732..6368795 326..389 100 -> Plus
arm_2R 6368868..6369093 390..615 100   Plus

BS06042.pep Sequence

Translation from 16 to 615

> BS06042.pep
MSYGQGYNPYAQPGGGYAPPPGAFPPQNAQVSPQAQQWFSMVDRDRSGKI
NASELQAALVNGRGDHFSDNACKLMISMFDNDASGTIDIYEFEKLYNYIN
QWLQVFKTYDQDSSGHIEEQELTQAFTQMGFRFSPEFINFLVKKSDPQGH
KEVSVDQFIVLCVQVQRFTEAFRQRDTQQNGTITIGFEDFLTVAIGCSY*

BS06042.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-PA 199 CG17765-PA 1..199 1..199 1063 100 Plus
Alg-2-PC 178 CG40410-PC 18..172 39..193 337 41.9 Plus
CalpA-PC 828 CG7563-PC 699..822 67..191 204 30.4 Plus
CalpA-PB 828 CG7563-PB 699..822 67..191 204 30.4 Plus
CalpA-PD 843 CG7563-PD 714..837 67..191 204 30.4 Plus