Clone Sequence Records
BS06046.3prime Sequence
786 bp (719 high quality bases) assembled on 2005-12-03
> BS06046.3prime
ATGGTCTAGAAAGCTTTTAAAATTTATAGATGACATGTTCGCAAAACTTG
TGAATAAGGTTAATTCGCTCGTCAAATCTCTTCCCTTTGTACTCAAATTC
CGAATAAGAAACGGTGTTGATCACTTTAAAGTCTGTTGCTTTTCCAACCT
TTTGAGAGAATCTAGAGGTCCAGAGTGCGGTGACGGCAGCTGGGCGTTTT
GATCTTAGTTTATCATCGATATCCTCCAGGCCCTTTCCTTCGGCCAGCTC
CTTGGTCAGTTCAATTGTGAACTGGGACAACGATCGACCCAATCCCAATC
GCTCGTGGCTCGGTAAAGTGGCCAGAAACATCAGTTCACAGAAGCACACC
ATGTTGAACATGGCACACACATCAATTCTTCCATCCACTTCGATCATAAA
GTCCATTAGACGCCTTGCCTGAGGACTTTTAACTTCCTCGTTCCGGAATT
TTAAAAAGAAGTGATCCTCGCCAGGTGGTGGTGCATACTGAATTTTATTA
AACGACACGGACACTACGCGACCCGTATCCGCCTCTTTAACCAACAATGA
GACACCATCCAGAGCGGTTTTTCTGCACAACTCTCGCAAGTCCAAACGAG
CTTGCCGATTTTCCGGCAAATTAATTTCACAGGCAACACACACAGATTCG
TTGAGAAAGAATGAGCCGTCAAGAACATCTAGCGCCTCTTCCAGGTCGGA
GTGAGTGACACTGCGCACCTCAAATTTGCCGTCGTGCAACGTTCCCCAGA
GTCTTCCGTTTTCCATCCGCATGTCGACTGATAACT
BS06046.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-PA | 756 | CG31248-RA | 1..756 | 772..17 | 3780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-RB | 832 | CG31248-RB | 56..813 | 772..15 | 3790 | 100 | Minus |
CG31248-RA | 977 | CG31248-RA | 201..958 | 772..15 | 3790 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7130414..7130889 | 490..15 | 2380 | 100 | Minus |
3R | 32079331 | 3R | 7130174..7130362 | 676..488 | 945 | 100 | Minus |
3R | 32079331 | 3R | 7129624..7129679 | 730..675 | 280 | 100 | Minus |
3R | 32079331 | 3R | 7129520..7129563 | 772..729 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:40:46 has no hits.
BS06046.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:31 Download gff for
BS06046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-PA | 1..756 | 17..772 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:36 Download gff for
BS06046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-PA | 1..756 | 17..772 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:27:40 Download gff for
BS06046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..958 | 15..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:54:28 Download gff for
BS06046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..958 | 15..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:54:28 Download gff for
BS06046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7129518..7129562 | 730..775 | 97 | -> | Minus |
3R | 7129625..7129677 | 677..729 | 100 | -> | Minus |
3R | 7130174..7130362 | 488..676 | 100 | -> | Minus |
3R | 7130417..7130889 | 15..487 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:27:40 Download gff for
BS06046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2955240..2955284 | 730..775 | 97 | -> | Minus |
arm_3R | 2955347..2955399 | 677..729 | 100 | -> | Minus |
arm_3R | 2955896..2956084 | 488..676 | 100 | -> | Minus |
arm_3R | 2956139..2956611 | 15..487 | 100 | | Minus |
BS06046.5prime Sequence
786 bp (785 high quality bases) assembled on 2005-12-03
> BS06046.5prime
GAAGTTATCAGTCGACATGCGGATGGAAAACGGAAGACTCTGGGGAACGT
TGCACGACGGCAAATTTGAGGTGCGCAGTGTCACTCACTCCGACCTGGAA
GAGGCGCTAGATGTTCTTGACGGCTCATTCTTTCTCAACGAATCTGTGTG
TGTTGCCTGTGAAATTAATTTGCCGGAAAATCGGCAAGCTCGTTTGGACT
TGCGAGAGTTGTGCAGAAAAACCGCTCTGGATGGTGTCTCATTGTTGGTT
AAAGAGGCGGATACGGGTCGCGTAGTGTCCGTGTCGTTTAATAAAATTCA
GTATGCACCACCACCTGGCGAGGATCACTTCTTTTTAAAATTCCGGAACG
AGGAAGTTAAAAGTCCTCAGGCAAGGCGTCTAATGGACTTTATGATCGAA
GTGGATGGAAGAATTGATGTGTGTGCCATGTTCAACATGGTGTGCTTCTG
TGAACTGATGTTTCTGGCCACTTTACCGAGCCACGAGCGATTGGGATTGG
GTCGATCGTTGTCCCAGTTCACAATTGAACTGACCAAGGAGCTGGCCGAA
GGAAAGGGCCTGGAGGATATCGATGATAAACTAAGATCAAAACGCCCAGC
TGCCGTCACCGCACTCTGGACCTCTAGATTCTCTCAAAAGGTTGGAAAAG
CAACAGACTTTAAAGTGATCAACACCGTTTCTTATTCGGAATTTGAGTAC
AAAGGGAAGAGATTTGACGAGCGAATTAACCTTATTCACAAGTTTTGCGA
ACATGTCATCTATAAATTTTAAAAGCTTTCTAGACC
BS06046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-PA | 756 | CG31248-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-RB | 832 | CG31248-RB | 56..813 | 17..774 | 3790 | 100 | Plus |
CG31248-RA | 977 | CG31248-RA | 201..958 | 17..774 | 3790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7130414..7130889 | 299..774 | 2380 | 100 | Plus |
3R | 32079331 | 3R | 7130174..7130362 | 113..301 | 945 | 100 | Plus |
3R | 32079331 | 3R | 7129624..7129679 | 59..114 | 280 | 100 | Plus |
3R | 32079331 | 3R | 7129520..7129563 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:40:41 has no hits.
BS06046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:32 Download gff for
BS06046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-PA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:37 Download gff for
BS06046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-PA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:19:38 Download gff for
BS06046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..958 | 14..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:44:23 Download gff for
BS06046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..958 | 14..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:44:23 Download gff for
BS06046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7129518..7129562 | 14..59 | 97 | -> | Plus |
3R | 7129625..7129677 | 60..112 | 100 | -> | Plus |
3R | 7130174..7130362 | 113..301 | 100 | -> | Plus |
3R | 7130417..7130889 | 302..774 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:19:38 Download gff for
BS06046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2955240..2955284 | 14..59 | 97 | -> | Plus |
arm_3R | 2955347..2955399 | 60..112 | 100 | -> | Plus |
arm_3R | 2955896..2956084 | 113..301 | 100 | -> | Plus |
arm_3R | 2956139..2956611 | 302..774 | 100 | | Plus |
BS06046.complete Sequence
788 bp (788 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635328
> BS06046.complete
GAAGTTATCAGTCGACATGCGGATGGAAAACGGAAGACTCTGGGGAACGT
TGCACGACGGCAAATTTGAGGTGCGCAGTGTCACTCACTCCGACCTGGAA
GAGGCGCTAGATGTTCTTGACGGCTCATTCTTTCTCAACGAATCTGTGTG
TGTTGCCTGTGAAATTAATTTGCCGGAAAATCGGCAAGCTCGTTTGGACT
TGCGAGAGTTGTGCAGAAAAACCGCTCTGGATGGTGTCTCATTGTTGGTT
AAAGAGGCGGATACGGGTCGCGTAGTGTCCGTGTCGTTTAATAAAATTCA
GTATGCACCACCACCTGGCGAGGATCACTTCTTTTTAAAATTCCGGAACG
AGGAAGTTAAAAGTCCTCAGGCAAGGCGTCTAATGGACTTTATGATCGAA
GTGGATGGAAGAATTGATGTGTGTGCCATGTTCAACATGGTGTGCTTCTG
TGAACTGATGTTTCTGGCCACTTTACCGAGCCACGAGCGATTGGGATTGG
GTCGATCGTTGTCCCAGTTCACAATTGAACTGACCAAGGAGCTGGCCGAA
GGAAAGGGCCTGGAGGATATCGATGATAAACTAAGATCAAAACGCCCAGC
TGCCGTCACCGCACTCTGGACCTCTAGATTCTCTCAAAAGGTTGGAAAAG
CAACAGACTTTAAAGTGATCAACACCGTTTCTTATTCGGAATTTGAGTAC
AAAGGGAAGAGATTTGACGAGCGAATTAACCTTATTCACAAGTTTTGCGA
ACATGTCATCTATAAATTTTAAAAGCTTTCTAGACCAT
BS06046.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-RB | 756 | CG31248-PB | 1..756 | 17..772 | 3780 | 100 | Plus |
CG31248-RA | 756 | CG31248-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-RB | 832 | CG31248-RB | 56..813 | 17..774 | 3790 | 100 | Plus |
CG31248-RA | 977 | CG31248-RA | 201..958 | 17..774 | 3790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7130414..7130889 | 299..774 | 2380 | 100 | Plus |
3R | 32079331 | 3R | 7130174..7130362 | 113..301 | 945 | 100 | Plus |
3R | 32079331 | 3R | 7129624..7129679 | 59..114 | 280 | 100 | Plus |
3R | 32079331 | 3R | 7129520..7129563 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:31:06 has no hits.
BS06046.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:45 Download gff for
BS06046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:45 Download gff for
BS06046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..958 | 14..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:59 Download gff for
BS06046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 201..954 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:45 Download gff for
BS06046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..958 | 14..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:18 Download gff for
BS06046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 201..954 | 17..770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:18 Download gff for
BS06046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7129520..7129562 | 17..59 | 100 | -> | Plus |
3R | 7129625..7129677 | 60..112 | 100 | -> | Plus |
3R | 7130174..7130362 | 113..301 | 100 | -> | Plus |
3R | 7130417..7130885 | 302..770 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:59 Download gff for
BS06046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2955242..2955284 | 17..59 | 100 | -> | Plus |
arm_3R | 2955347..2955399 | 60..112 | 100 | -> | Plus |
arm_3R | 2955896..2956084 | 113..301 | 100 | -> | Plus |
arm_3R | 2956139..2956607 | 302..770 | 100 | | Plus |
BS06046.pep Sequence
Translation from 16 to 771
> BS06046.pep
MRMENGRLWGTLHDGKFEVRSVTHSDLEEALDVLDGSFFLNESVCVACEI
NLPENRQARLDLRELCRKTALDGVSLLVKEADTGRVVSVSFNKIQYAPPP
GEDHFFLKFRNEEVKSPQARRLMDFMIEVDGRIDVCAMFNMVCFCELMFL
ATLPSHERLGLGRSLSQFTIELTKELAEGKGLEDIDDKLRSKRPAAVTAL
WTSRFSQKVGKATDFKVINTVSYSEFEYKGKRFDERINLIHKFCEHVIYK
F*
BS06046.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-PB | 251 | CG31248-PB | 1..251 | 1..251 | 1306 | 100 | Plus |
CG31248-PA | 251 | CG31248-PA | 1..251 | 1..251 | 1306 | 100 | Plus |
CG31493-PA | 246 | CG31493-PA | 7..218 | 12..225 | 173 | 26.6 | Plus |