Clone BS06046 Report

Search the DGRC for BS06046

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG31248-RA
Protein status:BS06046.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06046.3prime Sequence

786 bp (719 high quality bases) assembled on 2005-12-03

> BS06046.3prime
ATGGTCTAGAAAGCTTTTAAAATTTATAGATGACATGTTCGCAAAACTTG
TGAATAAGGTTAATTCGCTCGTCAAATCTCTTCCCTTTGTACTCAAATTC
CGAATAAGAAACGGTGTTGATCACTTTAAAGTCTGTTGCTTTTCCAACCT
TTTGAGAGAATCTAGAGGTCCAGAGTGCGGTGACGGCAGCTGGGCGTTTT
GATCTTAGTTTATCATCGATATCCTCCAGGCCCTTTCCTTCGGCCAGCTC
CTTGGTCAGTTCAATTGTGAACTGGGACAACGATCGACCCAATCCCAATC
GCTCGTGGCTCGGTAAAGTGGCCAGAAACATCAGTTCACAGAAGCACACC
ATGTTGAACATGGCACACACATCAATTCTTCCATCCACTTCGATCATAAA
GTCCATTAGACGCCTTGCCTGAGGACTTTTAACTTCCTCGTTCCGGAATT
TTAAAAAGAAGTGATCCTCGCCAGGTGGTGGTGCATACTGAATTTTATTA
AACGACACGGACACTACGCGACCCGTATCCGCCTCTTTAACCAACAATGA
GACACCATCCAGAGCGGTTTTTCTGCACAACTCTCGCAAGTCCAAACGAG
CTTGCCGATTTTCCGGCAAATTAATTTCACAGGCAACACACACAGATTCG
TTGAGAAAGAATGAGCCGTCAAGAACATCTAGCGCCTCTTCCAGGTCGGA
GTGAGTGACACTGCGCACCTCAAATTTGCCGTCGTGCAACGTTCCCCAGA
GTCTTCCGTTTTCCATCCGCATGTCGACTGATAACT

BS06046.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-PA 756 CG31248-RA 1..756 772..17 3780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-RB 832 CG31248-RB 56..813 772..15 3790 100 Minus
CG31248-RA 977 CG31248-RA 201..958 772..15 3790 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7130414..7130889 490..15 2380 100 Minus
3R 32079331 3R 7130174..7130362 676..488 945 100 Minus
3R 32079331 3R 7129624..7129679 730..675 280 100 Minus
3R 32079331 3R 7129520..7129563 772..729 220 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:40:46 has no hits.

BS06046.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:31 Download gff for BS06046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-PA 1..756 17..772 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:36 Download gff for BS06046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-PA 1..756 17..772 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:27:40 Download gff for BS06046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..958 15..775 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:54:28 Download gff for BS06046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..958 15..775 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:54:28 Download gff for BS06046.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7129518..7129562 730..775 97 -> Minus
3R 7129625..7129677 677..729 100 -> Minus
3R 7130174..7130362 488..676 100 -> Minus
3R 7130417..7130889 15..487 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:27:40 Download gff for BS06046.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2955240..2955284 730..775 97 -> Minus
arm_3R 2955347..2955399 677..729 100 -> Minus
arm_3R 2955896..2956084 488..676 100 -> Minus
arm_3R 2956139..2956611 15..487 100   Minus

BS06046.5prime Sequence

786 bp (785 high quality bases) assembled on 2005-12-03

> BS06046.5prime
GAAGTTATCAGTCGACATGCGGATGGAAAACGGAAGACTCTGGGGAACGT
TGCACGACGGCAAATTTGAGGTGCGCAGTGTCACTCACTCCGACCTGGAA
GAGGCGCTAGATGTTCTTGACGGCTCATTCTTTCTCAACGAATCTGTGTG
TGTTGCCTGTGAAATTAATTTGCCGGAAAATCGGCAAGCTCGTTTGGACT
TGCGAGAGTTGTGCAGAAAAACCGCTCTGGATGGTGTCTCATTGTTGGTT
AAAGAGGCGGATACGGGTCGCGTAGTGTCCGTGTCGTTTAATAAAATTCA
GTATGCACCACCACCTGGCGAGGATCACTTCTTTTTAAAATTCCGGAACG
AGGAAGTTAAAAGTCCTCAGGCAAGGCGTCTAATGGACTTTATGATCGAA
GTGGATGGAAGAATTGATGTGTGTGCCATGTTCAACATGGTGTGCTTCTG
TGAACTGATGTTTCTGGCCACTTTACCGAGCCACGAGCGATTGGGATTGG
GTCGATCGTTGTCCCAGTTCACAATTGAACTGACCAAGGAGCTGGCCGAA
GGAAAGGGCCTGGAGGATATCGATGATAAACTAAGATCAAAACGCCCAGC
TGCCGTCACCGCACTCTGGACCTCTAGATTCTCTCAAAAGGTTGGAAAAG
CAACAGACTTTAAAGTGATCAACACCGTTTCTTATTCGGAATTTGAGTAC
AAAGGGAAGAGATTTGACGAGCGAATTAACCTTATTCACAAGTTTTGCGA
ACATGTCATCTATAAATTTTAAAAGCTTTCTAGACC

BS06046.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-PA 756 CG31248-RA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-RB 832 CG31248-RB 56..813 17..774 3790 100 Plus
CG31248-RA 977 CG31248-RA 201..958 17..774 3790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7130414..7130889 299..774 2380 100 Plus
3R 32079331 3R 7130174..7130362 113..301 945 100 Plus
3R 32079331 3R 7129624..7129679 59..114 280 100 Plus
3R 32079331 3R 7129520..7129563 17..60 220 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:40:41 has no hits.

BS06046.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:32 Download gff for BS06046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-PA 1..756 17..772 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:37 Download gff for BS06046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-PA 1..756 17..772 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:19:38 Download gff for BS06046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..958 14..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:44:23 Download gff for BS06046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..958 14..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:44:23 Download gff for BS06046.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7129518..7129562 14..59 97 -> Plus
3R 7129625..7129677 60..112 100 -> Plus
3R 7130174..7130362 113..301 100 -> Plus
3R 7130417..7130889 302..774 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:19:38 Download gff for BS06046.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2955240..2955284 14..59 97 -> Plus
arm_3R 2955347..2955399 60..112 100 -> Plus
arm_3R 2955896..2956084 113..301 100 -> Plus
arm_3R 2956139..2956611 302..774 100   Plus

BS06046.complete Sequence

788 bp (788 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635328

> BS06046.complete
GAAGTTATCAGTCGACATGCGGATGGAAAACGGAAGACTCTGGGGAACGT
TGCACGACGGCAAATTTGAGGTGCGCAGTGTCACTCACTCCGACCTGGAA
GAGGCGCTAGATGTTCTTGACGGCTCATTCTTTCTCAACGAATCTGTGTG
TGTTGCCTGTGAAATTAATTTGCCGGAAAATCGGCAAGCTCGTTTGGACT
TGCGAGAGTTGTGCAGAAAAACCGCTCTGGATGGTGTCTCATTGTTGGTT
AAAGAGGCGGATACGGGTCGCGTAGTGTCCGTGTCGTTTAATAAAATTCA
GTATGCACCACCACCTGGCGAGGATCACTTCTTTTTAAAATTCCGGAACG
AGGAAGTTAAAAGTCCTCAGGCAAGGCGTCTAATGGACTTTATGATCGAA
GTGGATGGAAGAATTGATGTGTGTGCCATGTTCAACATGGTGTGCTTCTG
TGAACTGATGTTTCTGGCCACTTTACCGAGCCACGAGCGATTGGGATTGG
GTCGATCGTTGTCCCAGTTCACAATTGAACTGACCAAGGAGCTGGCCGAA
GGAAAGGGCCTGGAGGATATCGATGATAAACTAAGATCAAAACGCCCAGC
TGCCGTCACCGCACTCTGGACCTCTAGATTCTCTCAAAAGGTTGGAAAAG
CAACAGACTTTAAAGTGATCAACACCGTTTCTTATTCGGAATTTGAGTAC
AAAGGGAAGAGATTTGACGAGCGAATTAACCTTATTCACAAGTTTTGCGA
ACATGTCATCTATAAATTTTAAAAGCTTTCTAGACCAT

BS06046.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-RB 756 CG31248-PB 1..756 17..772 3780 100 Plus
CG31248-RA 756 CG31248-PA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-RB 832 CG31248-RB 56..813 17..774 3790 100 Plus
CG31248-RA 977 CG31248-RA 201..958 17..774 3790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7130414..7130889 299..774 2380 100 Plus
3R 32079331 3R 7130174..7130362 113..301 945 100 Plus
3R 32079331 3R 7129624..7129679 59..114 280 100 Plus
3R 32079331 3R 7129520..7129563 17..60 220 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:31:06 has no hits.

BS06046.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:45 Download gff for BS06046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 1..756 17..772 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:45 Download gff for BS06046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..958 14..774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:59 Download gff for BS06046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 201..954 17..770 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:45 Download gff for BS06046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..958 14..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:18 Download gff for BS06046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 201..954 17..770 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:18 Download gff for BS06046.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7129520..7129562 17..59 100 -> Plus
3R 7129625..7129677 60..112 100 -> Plus
3R 7130174..7130362 113..301 100 -> Plus
3R 7130417..7130885 302..770 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:59 Download gff for BS06046.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2955242..2955284 17..59 100 -> Plus
arm_3R 2955347..2955399 60..112 100 -> Plus
arm_3R 2955896..2956084 113..301 100 -> Plus
arm_3R 2956139..2956607 302..770 100   Plus

BS06046.pep Sequence

Translation from 16 to 771

> BS06046.pep
MRMENGRLWGTLHDGKFEVRSVTHSDLEEALDVLDGSFFLNESVCVACEI
NLPENRQARLDLRELCRKTALDGVSLLVKEADTGRVVSVSFNKIQYAPPP
GEDHFFLKFRNEEVKSPQARRLMDFMIEVDGRIDVCAMFNMVCFCELMFL
ATLPSHERLGLGRSLSQFTIELTKELAEGKGLEDIDDKLRSKRPAAVTAL
WTSRFSQKVGKATDFKVINTVSYSEFEYKGKRFDERINLIHKFCEHVIYK
F*

BS06046.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-PB 251 CG31248-PB 1..251 1..251 1306 100 Plus
CG31248-PA 251 CG31248-PA 1..251 1..251 1306 100 Plus
CG31493-PA 246 CG31493-PA 7..218 12..225 173 26.6 Plus