Clone Sequence Records
BS06053.3prime Sequence
828 bp (801 high quality bases) assembled on 2005-12-03
> BS06053.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGGCTGGAGCCTGTGGCGGAACTACC
TCGGCGGGGGGATTAGCGTTGCGGAAGTTGGGGAACTGTTCCCAAGGCGC
CGACAAGTCAAACTTCCTGAACTCCTGGGCCAACTCCAAGGGCTCGCAGA
CGACTCGCTTCTTCTCATCATCGTAGCGCAGCTCTACGTAGCCGGACAGC
GGGAAGTCGCGGCGCTGGGGATGTCCCTCAAAACCGTAATCGGTCAGGAT
GCGGCGCAAGTCGGGATGGTTGGCAAAGAACACGCCGTACATGTCCCAGA
TCTCACGTTCGTACCAGTTGGCCGCCTTATGCACCTCGCAGGCGGAGTCC
AGAGGAGTCAGCTCATCGGTGTAGGTCTTAACGCGGATGCGCGAATTGTA
GCGCAGCGAGAGCAAATTGTAGACCACCTCGAATCGGTTCTTGCGACAGG
GCACATCCACGCCGGCAATGTCAACCAGGTTGGTAAACTGCGCCTGATGA
TGATCCTTAAGGAACTGCAGCACGGGCACCACGCCCTCTGGCGCAATAAG
CACCTCCAGCTCATCGCCGGCGGTCAGCTGCACCTTCTGCACGTACTTGG
GCAGGCACTCGGCCACATAGCGCCCGAAATCGGAGAGATGCGAGCGAGCG
ACTGCGTCCGGCTGGCGGACAGTGGGCTTATCCGCCTTCTTAGGCTCCAC
TGGCGTTGTACTGGCCATCCGAAGAGCAGTGGATCCAGCAGCGGGCACCA
CATGTTTGGCCGACAGAGCGGCGACTGCGGCACGGGCACCCAGATTCCTG
ATTAANGCCGCCATGTCGACTGATAACT
BS06053.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12079-PA | 798 | CG12079-RA | 1..798 | 814..17 | 3971 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFS3-RA | 976 | CG12079-RA | 107..904 | 814..17 | 3979 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3158557..3159215 | 17..675 | 3295 | 100 | Plus |
3L | 28110227 | 3L | 3159274..3159349 | 676..751 | 380 | 100 | Plus |
3L | 28110227 | 3L | 3159409..3159472 | 751..814 | 309 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:32:35 has no hits.
BS06053.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:42 Download gff for
BS06053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-PA | 1..798 | 17..814 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:49 Download gff for
BS06053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-PA | 1..798 | 17..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:53:21 Download gff for
BS06053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 97..904 | 17..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:32 Download gff for
BS06053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFS3-RA | 97..904 | 17..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:32 Download gff for
BS06053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3158557..3159215 | 17..675 | 100 | <- | Plus |
3L | 3159274..3159348 | 676..750 | 100 | <- | Plus |
3L | 3159409..3159482 | 751..828 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:53:21 Download gff for
BS06053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3159274..3159348 | 676..750 | 100 | <- | Plus |
arm_3L | 3159409..3159482 | 751..828 | 92 | | Plus |
arm_3L | 3158557..3159215 | 17..675 | 100 | <- | Plus |
BS06053.5prime Sequence
828 bp (734 high quality bases) assembled on 2005-12-03
> BS06053.5prime
GAAGTTATCAGTCGACATGGCGGCCTTAATCAGGAATCTGGGTGCCCGTG
CCGCAGTCGCCGCTCTGTCGGCCAAACATGTGGTGCCCGCTGCTGGATCC
ACTGCTCTTCGGATGGCCAGTACAACGCCAGTGGAGCCTAAGAAGGCGGA
TAAGCCCACTGTCCGCCAGCCGGACGCAGTCGCTCGCTCGCATCTCTCCG
ATTTCGGGCGCTATGTGGCCGAGTGCCTGCCCAAGTACGTGCAGAAGGTG
CAGCTGACCGCCGGCGATGAGCTGGAGGTGCTTATTGCGCCAGAGGGCGT
GGTGCCCGTGCTGCAGTTCCTTAAGGATCATCATCAGGCGCAGTTTACCA
ACCTGGTTGACATTGCCGGCGTGGATGTGCCCTGTCGCAAGAACCGATTC
GAGGTGGTCTACAATTTGCTCTCGCTGCGCTACAATTCGCGCATCCGCGT
TAAGACCTACACCGATGAGCTGACTCCTCTGGACTCCGCCTGCGAGGTGC
ATAAGGCGGCCAACTGGTACGAACGTGAGATCTGGGACATGTACGGCGTG
TTCTTTGCCAACCATCCCGACTTGCGCCGCATCCTGACCGATTACGGTTT
TGAGGGACATCCCCAGCGCCGCGACTTCCCGCTGTCCGGCTACGTAGAGC
TGCGCTACGATGATGAGAAGAAGCGAGTCGTCTGCGAGCCCTTGGAGTTG
GCCCAGGAGTTCAGGAAGTTTGACTTGTCGGCGCCTTGGGAACAGTTCCC
CAACTTCCGCAACGCTAATCCCCCCGCCGAGGTAGTTCCGCCACAGGCTC
CAGCCAAGAAGTAAAAGCTTTCTAGACC
BS06053.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12079-PA | 798 | CG12079-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFS3-RA | 976 | CG12079-RA | 107..904 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3158557..3159215 | 814..156 | 3295 | 100 | Minus |
3L | 28110227 | 3L | 3159274..3159349 | 155..80 | 380 | 100 | Minus |
3L | 28110227 | 3L | 3159409..3159472 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:35:13 has no hits.
BS06053.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:43 Download gff for
BS06053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:51 Download gff for
BS06053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:12 Download gff for
BS06053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 97..904 | 3..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:47 Download gff for
BS06053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFS3-RA | 97..904 | 3..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:47 Download gff for
BS06053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3159409..3159482 | 3..80 | 93 | | Minus |
3L | 3158557..3159215 | 156..814 | 100 | <- | Minus |
3L | 3159274..3159348 | 81..155 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:12 Download gff for
BS06053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3159274..3159348 | 81..155 | 100 | <- | Minus |
arm_3L | 3159409..3159482 | 3..80 | 93 | | Minus |
arm_3L | 3158557..3159215 | 156..814 | 100 | <- | Minus |
BS06053.complete Sequence
830 bp (830 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635329
> BS06053.complete
GAAGTTATCAGTCGACATGGCGGCCTTAATCAGGAATCTGGGTGCCCGTG
CCGCAGTCGCCGCTCTGTCGGCCAAACATGTGGTGCCCGCTGCTGGATCC
ACTGCTCTTCGGATGGCCAGTACAACGCCAGTGGAGCCTAAGAAGGCGGA
TAAGCCCACTGTCCGCCAGCCGGACGCAGTCGCTCGCTCGCATCTCTCCG
ATTTCGGGCGCTATGTGGCCGAGTGCCTGCCCAAGTACGTGCAGAAGGTG
CAGCTGACCGCCGGCGATGAGCTGGAGGTGCTTATTGCGCCAGAGGGCGT
GGTGCCCGTGCTGCAGTTCCTTAAGGATCATCATCAGGCGCAGTTTACCA
ACCTGGTTGACATTGCCGGCGTGGATGTGCCCTGTCGCAAGAACCGATTC
GAGGTGGTCTACAATTTGCTCTCGCTGCGCTACAATTCGCGCATCCGCGT
TAAGACCTACACCGATGAGCTGACTCCTCTGGACTCCGCCTGCGAGGTGC
ATAAGGCGGCCAACTGGTACGAACGTGAGATCTGGGACATGTACGGCGTG
TTCTTTGCCAACCATCCCGACTTGCGCCGCATCCTGACCGATTACGGTTT
TGAGGGACATCCCCAGCGCCGCGACTTCCCGCTGTCCGGCTACGTAGAGC
TGCGCTACGATGATGAGAAGAAGCGAGTCGTCTGCGAGCCCTTGGAGTTG
GCCCAGGAGTTCAGGAAGTTTGACTTGTCGGCGCCTTGGGAACAGTTCCC
CAACTTCCGCAACGCTAATCCCCCCGCCGAGGTAGTTCCGCCACAGGCTC
CAGCCAAGAAGTAAAAGCTTTCTAGACCAT
BS06053.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFS3-RA | 798 | CG12079-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFS3-RA | 976 | CG12079-RA | 107..904 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3158557..3159215 | 814..156 | 3295 | 100 | Minus |
3L | 28110227 | 3L | 3159274..3159349 | 155..80 | 380 | 100 | Minus |
3L | 28110227 | 3L | 3159409..3159472 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:59:26 has no hits.
BS06053.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:47 Download gff for
BS06053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:46 Download gff for
BS06053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 92..899 | 3..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:36 Download gff for
BS06053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 107..902 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:47 Download gff for
BS06053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 92..899 | 3..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:25 Download gff for
BS06053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFS3-RA | 107..902 | 17..812 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:25 Download gff for
BS06053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3159274..3159348 | 81..155 | 100 | <- | Minus |
3L | 3159409..3159472 | 17..80 | 100 | | Minus |
3L | 3158559..3159215 | 156..812 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:36 Download gff for
BS06053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3158559..3159215 | 156..812 | 100 | <- | Minus |
arm_3L | 3159274..3159348 | 81..155 | 100 | <- | Minus |
arm_3L | 3159409..3159472 | 17..80 | 100 | | Minus |
BS06053.pep Sequence
Translation from 16 to 813
> BS06053.pep
MAALIRNLGARAAVAALSAKHVVPAAGSTALRMASTTPVEPKKADKPTVR
QPDAVARSHLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQ
FLKDHHQAQFTNLVDIAGVDVPCRKNRFEVVYNLLSLRYNSRIRVKTYTD
ELTPLDSACEVHKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPQ
RRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAPWEQFPNFRNA
NPPAEVVPPQAPAKK*
BS06053.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFS3-PA | 265 | CG12079-PA | 1..265 | 1..265 | 1394 | 100 | Plus |