Clone BS06053 Report

Search the DGRC for BS06053

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptNDUFS3-RA
Protein status:BS06053.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06053.3prime Sequence

828 bp (801 high quality bases) assembled on 2005-12-03

> BS06053.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGGCTGGAGCCTGTGGCGGAACTACC
TCGGCGGGGGGATTAGCGTTGCGGAAGTTGGGGAACTGTTCCCAAGGCGC
CGACAAGTCAAACTTCCTGAACTCCTGGGCCAACTCCAAGGGCTCGCAGA
CGACTCGCTTCTTCTCATCATCGTAGCGCAGCTCTACGTAGCCGGACAGC
GGGAAGTCGCGGCGCTGGGGATGTCCCTCAAAACCGTAATCGGTCAGGAT
GCGGCGCAAGTCGGGATGGTTGGCAAAGAACACGCCGTACATGTCCCAGA
TCTCACGTTCGTACCAGTTGGCCGCCTTATGCACCTCGCAGGCGGAGTCC
AGAGGAGTCAGCTCATCGGTGTAGGTCTTAACGCGGATGCGCGAATTGTA
GCGCAGCGAGAGCAAATTGTAGACCACCTCGAATCGGTTCTTGCGACAGG
GCACATCCACGCCGGCAATGTCAACCAGGTTGGTAAACTGCGCCTGATGA
TGATCCTTAAGGAACTGCAGCACGGGCACCACGCCCTCTGGCGCAATAAG
CACCTCCAGCTCATCGCCGGCGGTCAGCTGCACCTTCTGCACGTACTTGG
GCAGGCACTCGGCCACATAGCGCCCGAAATCGGAGAGATGCGAGCGAGCG
ACTGCGTCCGGCTGGCGGACAGTGGGCTTATCCGCCTTCTTAGGCTCCAC
TGGCGTTGTACTGGCCATCCGAAGAGCAGTGGATCCAGCAGCGGGCACCA
CATGTTTGGCCGACAGAGCGGCGACTGCGGCACGGGCACCCAGATTCCTG
ATTAANGCCGCCATGTCGACTGATAACT

BS06053.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12079-PA 798 CG12079-RA 1..798 814..17 3971 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFS3-RA 976 CG12079-RA 107..904 814..17 3979 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3158557..3159215 17..675 3295 100 Plus
3L 28110227 3L 3159274..3159349 676..751 380 100 Plus
3L 28110227 3L 3159409..3159472 751..814 309 98.4 Plus
Blast to na_te.dros performed on 2015-02-12 01:32:35 has no hits.

BS06053.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:42 Download gff for BS06053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-PA 1..798 17..814 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:49 Download gff for BS06053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-PA 1..798 17..814 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:53:21 Download gff for BS06053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 97..904 17..828 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:32 Download gff for BS06053.3prime
Subject Subject Range Query Range Percent Splice Strand
NDUFS3-RA 97..904 17..828 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:32 Download gff for BS06053.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3158557..3159215 17..675 100 <- Plus
3L 3159274..3159348 676..750 100 <- Plus
3L 3159409..3159482 751..828 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:53:21 Download gff for BS06053.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3159274..3159348 676..750 100 <- Plus
arm_3L 3159409..3159482 751..828 92   Plus
arm_3L 3158557..3159215 17..675 100 <- Plus

BS06053.5prime Sequence

828 bp (734 high quality bases) assembled on 2005-12-03

> BS06053.5prime
GAAGTTATCAGTCGACATGGCGGCCTTAATCAGGAATCTGGGTGCCCGTG
CCGCAGTCGCCGCTCTGTCGGCCAAACATGTGGTGCCCGCTGCTGGATCC
ACTGCTCTTCGGATGGCCAGTACAACGCCAGTGGAGCCTAAGAAGGCGGA
TAAGCCCACTGTCCGCCAGCCGGACGCAGTCGCTCGCTCGCATCTCTCCG
ATTTCGGGCGCTATGTGGCCGAGTGCCTGCCCAAGTACGTGCAGAAGGTG
CAGCTGACCGCCGGCGATGAGCTGGAGGTGCTTATTGCGCCAGAGGGCGT
GGTGCCCGTGCTGCAGTTCCTTAAGGATCATCATCAGGCGCAGTTTACCA
ACCTGGTTGACATTGCCGGCGTGGATGTGCCCTGTCGCAAGAACCGATTC
GAGGTGGTCTACAATTTGCTCTCGCTGCGCTACAATTCGCGCATCCGCGT
TAAGACCTACACCGATGAGCTGACTCCTCTGGACTCCGCCTGCGAGGTGC
ATAAGGCGGCCAACTGGTACGAACGTGAGATCTGGGACATGTACGGCGTG
TTCTTTGCCAACCATCCCGACTTGCGCCGCATCCTGACCGATTACGGTTT
TGAGGGACATCCCCAGCGCCGCGACTTCCCGCTGTCCGGCTACGTAGAGC
TGCGCTACGATGATGAGAAGAAGCGAGTCGTCTGCGAGCCCTTGGAGTTG
GCCCAGGAGTTCAGGAAGTTTGACTTGTCGGCGCCTTGGGAACAGTTCCC
CAACTTCCGCAACGCTAATCCCCCCGCCGAGGTAGTTCCGCCACAGGCTC
CAGCCAAGAAGTAAAAGCTTTCTAGACC

BS06053.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12079-PA 798 CG12079-RA 1..798 17..814 3990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFS3-RA 976 CG12079-RA 107..904 17..814 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3158557..3159215 814..156 3295 100 Minus
3L 28110227 3L 3159274..3159349 155..80 380 100 Minus
3L 28110227 3L 3159409..3159472 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:35:13 has no hits.

BS06053.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:43 Download gff for BS06053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-PA 1..798 17..814 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:51 Download gff for BS06053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-PA 1..798 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:12 Download gff for BS06053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 97..904 3..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:47 Download gff for BS06053.5prime
Subject Subject Range Query Range Percent Splice Strand
NDUFS3-RA 97..904 3..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:47 Download gff for BS06053.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3159409..3159482 3..80 93   Minus
3L 3158557..3159215 156..814 100 <- Minus
3L 3159274..3159348 81..155 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:12 Download gff for BS06053.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3159274..3159348 81..155 100 <- Minus
arm_3L 3159409..3159482 3..80 93   Minus
arm_3L 3158557..3159215 156..814 100 <- Minus

BS06053.complete Sequence

830 bp (830 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635329

> BS06053.complete
GAAGTTATCAGTCGACATGGCGGCCTTAATCAGGAATCTGGGTGCCCGTG
CCGCAGTCGCCGCTCTGTCGGCCAAACATGTGGTGCCCGCTGCTGGATCC
ACTGCTCTTCGGATGGCCAGTACAACGCCAGTGGAGCCTAAGAAGGCGGA
TAAGCCCACTGTCCGCCAGCCGGACGCAGTCGCTCGCTCGCATCTCTCCG
ATTTCGGGCGCTATGTGGCCGAGTGCCTGCCCAAGTACGTGCAGAAGGTG
CAGCTGACCGCCGGCGATGAGCTGGAGGTGCTTATTGCGCCAGAGGGCGT
GGTGCCCGTGCTGCAGTTCCTTAAGGATCATCATCAGGCGCAGTTTACCA
ACCTGGTTGACATTGCCGGCGTGGATGTGCCCTGTCGCAAGAACCGATTC
GAGGTGGTCTACAATTTGCTCTCGCTGCGCTACAATTCGCGCATCCGCGT
TAAGACCTACACCGATGAGCTGACTCCTCTGGACTCCGCCTGCGAGGTGC
ATAAGGCGGCCAACTGGTACGAACGTGAGATCTGGGACATGTACGGCGTG
TTCTTTGCCAACCATCCCGACTTGCGCCGCATCCTGACCGATTACGGTTT
TGAGGGACATCCCCAGCGCCGCGACTTCCCGCTGTCCGGCTACGTAGAGC
TGCGCTACGATGATGAGAAGAAGCGAGTCGTCTGCGAGCCCTTGGAGTTG
GCCCAGGAGTTCAGGAAGTTTGACTTGTCGGCGCCTTGGGAACAGTTCCC
CAACTTCCGCAACGCTAATCCCCCCGCCGAGGTAGTTCCGCCACAGGCTC
CAGCCAAGAAGTAAAAGCTTTCTAGACCAT

BS06053.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFS3-RA 798 CG12079-PA 1..798 17..814 3990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFS3-RA 976 CG12079-RA 107..904 17..814 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3158557..3159215 814..156 3295 100 Minus
3L 28110227 3L 3159274..3159349 155..80 380 100 Minus
3L 28110227 3L 3159409..3159472 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:59:26 has no hits.

BS06053.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:47 Download gff for BS06053.complete
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 1..798 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:46 Download gff for BS06053.complete
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 92..899 3..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:36 Download gff for BS06053.complete
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 107..902 17..812 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:47 Download gff for BS06053.complete
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 92..899 3..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:25 Download gff for BS06053.complete
Subject Subject Range Query Range Percent Splice Strand
NDUFS3-RA 107..902 17..812 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:25 Download gff for BS06053.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3159274..3159348 81..155 100 <- Minus
3L 3159409..3159472 17..80 100   Minus
3L 3158559..3159215 156..812 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:36 Download gff for BS06053.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3158559..3159215 156..812 100 <- Minus
arm_3L 3159274..3159348 81..155 100 <- Minus
arm_3L 3159409..3159472 17..80 100   Minus

BS06053.pep Sequence

Translation from 16 to 813

> BS06053.pep
MAALIRNLGARAAVAALSAKHVVPAAGSTALRMASTTPVEPKKADKPTVR
QPDAVARSHLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQ
FLKDHHQAQFTNLVDIAGVDVPCRKNRFEVVYNLLSLRYNSRIRVKTYTD
ELTPLDSACEVHKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPQ
RRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAPWEQFPNFRNA
NPPAEVVPPQAPAKK*

BS06053.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFS3-PA 265 CG12079-PA 1..265 1..265 1394 100 Plus