Clone BS06055 Report

Search the DGRC for BS06055

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG11836-RA
Protein status:BS06055.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06055.3prime Sequence

702 bp (701 high quality bases) assembled on 2005-12-03

> BS06055.3prime
ATGGTCTAGAAAGCTTCTATGAACACAGGCAGGTATTTTCTAAATTAGAC
TTAATCCACGGTATGAATTTGCTCACTCTGGAGTAAACACCCGGATATCC
TTCGCGGCCGCAACCAACGCCCCAGGACACAATGCCGACGATGAAATACT
TAACGCCATTGGATAGCAACAGCGGTCCTCCACTGTCGCCCTGGCATGAG
TCCATGGAAGGCCTACCCGCACACAACATGGATGAGGTAATTCGAGTACT
TTTGTATCTTTGATTTCGGCATTCCGTGATGGACATGATTGGCACCTTAA
CTTGATTAACTATGGATGGTAGTTCTCCTCCCTCGGATGTCCGTCCCCAG
CCGACAACCGTTCCAATGCGACCTGCGGGGTCGTAATTATAGCGCGGTAG
GCAGATTGGCTTTATAATTTTAGAAAACGATATAGGCTTGCGAAGTCGCA
ACAGGGCAATGTCGTTGTTGTATGTATCGGGGTCAAAGCTCTTGTGCTTT
ATCACAGCCGTAACCGCACGTTGGATGGCCTGTGACTCCGAGGTGATCTC
TTGATCGTGGTCGCCGAATATGACTCTGATTTTGGATTTTCGCAGTTTCT
TCACGCAGTGAGCGGCCGATAGAACGTAATCCTTCGTCAGTAAGGATCCT
CCGCAATGGAACTTGCCGTCGTACACGATTCGTGCCATGTCGACTGATAA
CT

BS06055.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-PB 672 CG11836-RB 1..672 688..17 3360 100 Minus
CG11836-PA 672 CG11836-RA 1..672 688..17 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-RF 1102 CG11836-RF 317..988 688..17 3360 100 Minus
CG11836-RE 1076 CG11836-RE 291..962 688..17 3360 100 Minus
CG11836-RI 1101 CG11836-RI 316..987 688..17 3360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25071810..25072127 688..371 1590 100 Minus
3R 32079331 3R 25072318..25072598 297..17 1405 100 Minus
3R 32079331 3R 25072185..25072266 374..293 410 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:08:51 has no hits.

BS06055.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:46 Download gff for BS06055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-PA 1..672 17..688 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:55 Download gff for BS06055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-PA 1..672 17..688 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:30 Download gff for BS06055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..987 17..688 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:02 Download gff for BS06055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..987 17..688 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:02 Download gff for BS06055.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25071810..25072125 373..688 100 -> Minus
3R 25072187..25072263 296..372 100 -> Minus
3R 25072320..25072598 17..295 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:30 Download gff for BS06055.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20897532..20897847 373..688 100 -> Minus
arm_3R 20897909..20897985 296..372 100 -> Minus
arm_3R 20898042..20898320 17..295 100   Minus

BS06055.5prime Sequence

702 bp (701 high quality bases) assembled on 2005-12-03

> BS06055.5prime
GAAGTTATCAGTCGACATGGCACGAATCGTGTACGACGGCAAGTTCCATT
GCGGAGGATCCTTACTGACGAAGGATTACGTTCTATCGGCCGCTCACTGC
GTGAAGAAACTGCGAAAATCCAAAATCAGAGTCATATTCGGCGACCACGA
TCAAGAGATCACCTCGGAGTCACAGGCCATCCAACGTGCGGTTACGGCTG
TGATAAAGCACAAGAGCTTTGACCCCGATACATACAACAACGACATTGCC
CTGTTGCGACTTCGCAAGCCTATATCGTTTTCTAAAATTATAAAGCCAAT
CTGCCTACCGCGCTATAATTACGACCCCGCAGGTCGCATTGGAACGGTTG
TCGGCTGGGGACGGACATCCGAGGGAGGAGAACTACCATCCATAGTTAAT
CAAGTTAAGGTGCCAATCATGTCCATCACGGAATGCCGAAATCAAAGATA
CAAAAGTACTCGAATTACCTCATCCATGTTGTGTGCGGGTAGGCCTTCCA
TGGACTCATGCCAGGGCGACAGTGGAGGACCGCTGTTGCTATCCAATGGC
GTTAAGTATTTCATCGTCGGCATTGTGTCCTGGGGCGTTGGTTGCGGCCG
CGAAGGATATCCGGGTGTTTACTCCAGAGTGAGCAAATTCATACCGTGGA
TTAAGTCTAATTTAGAAAATACCTGCCTGTGTTCATAGAAGCTTTCTAGA
CC

BS06055.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-PB 672 CG11836-RB 1..672 17..688 3360 100 Plus
CG11836-PA 672 CG11836-RA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-RF 1102 CG11836-RF 317..988 17..688 3360 100 Plus
CG11836-RE 1076 CG11836-RE 291..962 17..688 3360 100 Plus
CG11836-RI 1101 CG11836-RI 316..987 17..688 3360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25071810..25072127 17..334 1590 100 Plus
3R 32079331 3R 25072318..25072598 408..688 1405 100 Plus
3R 32079331 3R 25072185..25072266 331..412 410 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:48:48 has no hits.

BS06055.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:47 Download gff for BS06055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-PA 1..672 17..688 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:56 Download gff for BS06055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-PA 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:00:09 Download gff for BS06055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..987 17..688 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:24 Download gff for BS06055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..987 17..688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:24 Download gff for BS06055.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25071810..25072125 17..332 100 -> Plus
3R 25072187..25072263 333..409 100 -> Plus
3R 25072320..25072598 410..688 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:00:09 Download gff for BS06055.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20897532..20897847 17..332 100 -> Plus
arm_3R 20897909..20897985 333..409 100 -> Plus
arm_3R 20898042..20898320 410..688 100   Plus

BS06055.complete Sequence

704 bp (704 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635330

> BS06055.complete
GAAGTTATCAGTCGACATGGCACGAATCGTGTACGACGGCAAGTTCCATT
GCGGAGGATCCTTACTGACGAAGGATTACGTTCTATCGGCCGCTCACTGC
GTGAAGAAACTGCGAAAATCCAAAATCAGAGTCATATTCGGCGACCACGA
TCAAGAGATCACCTCGGAGTCACAGGCCATCCAACGTGCGGTTACGGCTG
TGATAAAGCACAAGAGCTTTGACCCCGATACATACAACAACGACATTGCC
CTGTTGCGACTTCGCAAGCCTATATCGTTTTCTAAAATTATAAAGCCAAT
CTGCCTACCGCGCTATAATTACGACCCCGCAGGTCGCATTGGAACGGTTG
TCGGCTGGGGACGGACATCCGAGGGAGGAGAACTACCATCCATAGTTAAT
CAAGTTAAGGTGCCAATCATGTCCATCACGGAATGCCGAAATCAAAGATA
CAAAAGTACTCGAATTACCTCATCCATGTTGTGTGCGGGTAGGCCTTCCA
TGGACTCATGCCAGGGCGACAGTGGAGGACCGCTGTTGCTATCCAATGGC
GTTAAGTATTTCATCGTCGGCATTGTGTCCTGGGGCGTTGGTTGCGGCCG
CGAAGGATATCCGGGTGTTTACTCCAGAGTGAGCAAATTCATACCGTGGA
TTAAGTCTAATTTAGAAAATACCTGCCTGTGTTCATAGAAGCTTTCTAGA
CCAT

BS06055.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-RF 672 CG11836-PF 1..672 17..688 3360 100 Plus
CG11836-RE 672 CG11836-PE 1..672 17..688 3360 100 Plus
CG11836-RI 846 CG11836-PI 175..846 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-RF 1102 CG11836-RF 317..988 17..688 3360 100 Plus
CG11836-RE 1076 CG11836-RE 291..962 17..688 3360 100 Plus
CG11836-RI 1101 CG11836-RI 316..987 17..688 3360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25071810..25072127 17..334 1590 100 Plus
3R 32079331 3R 25072318..25072598 408..688 1405 100 Plus
3R 32079331 3R 25072185..25072266 331..412 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:59:56 has no hits.

BS06055.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:48 Download gff for BS06055.complete
Subject Subject Range Query Range Percent Splice Strand
CG11836-RC 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:48 Download gff for BS06055.complete
Subject Subject Range Query Range Percent Splice Strand
CG11836-RC 305..976 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:20 Download gff for BS06055.complete
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..987 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:48 Download gff for BS06055.complete
Subject Subject Range Query Range Percent Splice Strand
CG11836-RC 305..976 17..688 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:01 Download gff for BS06055.complete
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..987 17..688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:01 Download gff for BS06055.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25071810..25072125 17..332 100 -> Plus
3R 25072187..25072263 333..409 100 -> Plus
3R 25072320..25072598 410..688 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:20 Download gff for BS06055.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20897532..20897847 17..332 100 -> Plus
arm_3R 20897909..20897985 333..409 100 -> Plus
arm_3R 20898042..20898320 410..688 100   Plus

BS06055.pep Sequence

Translation from 16 to 687

> BS06055.pep
MARIVYDGKFHCGGSLLTKDYVLSAAHCVKKLRKSKIRVIFGDHDQEITS
ESQAIQRAVTAVIKHKSFDPDTYNNDIALLRLRKPISFSKIIKPICLPRY
NYDPAGRIGTVVGWGRTSEGGELPSIVNQVKVPIMSITECRNQRYKSTRI
TSSMLCAGRPSMDSCQGDSGGPLLLSNGVKYFIVGIVSWGVGCGREGYPG
VYSRVSKFIPWIKSNLENTCLCS*

BS06055.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-PF 223 CG11836-PF 1..223 1..223 1182 100 Plus
CG11836-PE 223 CG11836-PE 1..223 1..223 1182 100 Plus
CG11836-PG 223 CG11836-PG 1..223 1..223 1182 100 Plus
CG11836-PC 223 CG11836-PC 1..223 1..223 1182 100 Plus
CG11836-PA 223 CG11836-PA 1..223 1..223 1182 100 Plus