Clone Sequence Records
BS06055.3prime Sequence
702 bp (701 high quality bases) assembled on 2005-12-03
> BS06055.3prime
ATGGTCTAGAAAGCTTCTATGAACACAGGCAGGTATTTTCTAAATTAGAC
TTAATCCACGGTATGAATTTGCTCACTCTGGAGTAAACACCCGGATATCC
TTCGCGGCCGCAACCAACGCCCCAGGACACAATGCCGACGATGAAATACT
TAACGCCATTGGATAGCAACAGCGGTCCTCCACTGTCGCCCTGGCATGAG
TCCATGGAAGGCCTACCCGCACACAACATGGATGAGGTAATTCGAGTACT
TTTGTATCTTTGATTTCGGCATTCCGTGATGGACATGATTGGCACCTTAA
CTTGATTAACTATGGATGGTAGTTCTCCTCCCTCGGATGTCCGTCCCCAG
CCGACAACCGTTCCAATGCGACCTGCGGGGTCGTAATTATAGCGCGGTAG
GCAGATTGGCTTTATAATTTTAGAAAACGATATAGGCTTGCGAAGTCGCA
ACAGGGCAATGTCGTTGTTGTATGTATCGGGGTCAAAGCTCTTGTGCTTT
ATCACAGCCGTAACCGCACGTTGGATGGCCTGTGACTCCGAGGTGATCTC
TTGATCGTGGTCGCCGAATATGACTCTGATTTTGGATTTTCGCAGTTTCT
TCACGCAGTGAGCGGCCGATAGAACGTAATCCTTCGTCAGTAAGGATCCT
CCGCAATGGAACTTGCCGTCGTACACGATTCGTGCCATGTCGACTGATAA
CT
BS06055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-PB | 672 | CG11836-RB | 1..672 | 688..17 | 3360 | 100 | Minus |
CG11836-PA | 672 | CG11836-RA | 1..672 | 688..17 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-RF | 1102 | CG11836-RF | 317..988 | 688..17 | 3360 | 100 | Minus |
CG11836-RE | 1076 | CG11836-RE | 291..962 | 688..17 | 3360 | 100 | Minus |
CG11836-RI | 1101 | CG11836-RI | 316..987 | 688..17 | 3360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25071810..25072127 | 688..371 | 1590 | 100 | Minus |
3R | 32079331 | 3R | 25072318..25072598 | 297..17 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 25072185..25072266 | 374..293 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:08:51 has no hits.
BS06055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:46 Download gff for
BS06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-PA | 1..672 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:55 Download gff for
BS06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-PA | 1..672 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:30 Download gff for
BS06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..987 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:02 Download gff for
BS06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..987 | 17..688 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:02 Download gff for
BS06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25071810..25072125 | 373..688 | 100 | -> | Minus |
3R | 25072187..25072263 | 296..372 | 100 | -> | Minus |
3R | 25072320..25072598 | 17..295 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:30 Download gff for
BS06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20897532..20897847 | 373..688 | 100 | -> | Minus |
arm_3R | 20897909..20897985 | 296..372 | 100 | -> | Minus |
arm_3R | 20898042..20898320 | 17..295 | 100 | | Minus |
BS06055.5prime Sequence
702 bp (701 high quality bases) assembled on 2005-12-03
> BS06055.5prime
GAAGTTATCAGTCGACATGGCACGAATCGTGTACGACGGCAAGTTCCATT
GCGGAGGATCCTTACTGACGAAGGATTACGTTCTATCGGCCGCTCACTGC
GTGAAGAAACTGCGAAAATCCAAAATCAGAGTCATATTCGGCGACCACGA
TCAAGAGATCACCTCGGAGTCACAGGCCATCCAACGTGCGGTTACGGCTG
TGATAAAGCACAAGAGCTTTGACCCCGATACATACAACAACGACATTGCC
CTGTTGCGACTTCGCAAGCCTATATCGTTTTCTAAAATTATAAAGCCAAT
CTGCCTACCGCGCTATAATTACGACCCCGCAGGTCGCATTGGAACGGTTG
TCGGCTGGGGACGGACATCCGAGGGAGGAGAACTACCATCCATAGTTAAT
CAAGTTAAGGTGCCAATCATGTCCATCACGGAATGCCGAAATCAAAGATA
CAAAAGTACTCGAATTACCTCATCCATGTTGTGTGCGGGTAGGCCTTCCA
TGGACTCATGCCAGGGCGACAGTGGAGGACCGCTGTTGCTATCCAATGGC
GTTAAGTATTTCATCGTCGGCATTGTGTCCTGGGGCGTTGGTTGCGGCCG
CGAAGGATATCCGGGTGTTTACTCCAGAGTGAGCAAATTCATACCGTGGA
TTAAGTCTAATTTAGAAAATACCTGCCTGTGTTCATAGAAGCTTTCTAGA
CC
BS06055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-PB | 672 | CG11836-RB | 1..672 | 17..688 | 3360 | 100 | Plus |
CG11836-PA | 672 | CG11836-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-RF | 1102 | CG11836-RF | 317..988 | 17..688 | 3360 | 100 | Plus |
CG11836-RE | 1076 | CG11836-RE | 291..962 | 17..688 | 3360 | 100 | Plus |
CG11836-RI | 1101 | CG11836-RI | 316..987 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25071810..25072127 | 17..334 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 25072318..25072598 | 408..688 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 25072185..25072266 | 331..412 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:48:48 has no hits.
BS06055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:47 Download gff for
BS06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:04:56 Download gff for
BS06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:00:09 Download gff for
BS06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..987 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:24 Download gff for
BS06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..987 | 17..688 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:24 Download gff for
BS06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25071810..25072125 | 17..332 | 100 | -> | Plus |
3R | 25072187..25072263 | 333..409 | 100 | -> | Plus |
3R | 25072320..25072598 | 410..688 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:00:09 Download gff for
BS06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20897532..20897847 | 17..332 | 100 | -> | Plus |
arm_3R | 20897909..20897985 | 333..409 | 100 | -> | Plus |
arm_3R | 20898042..20898320 | 410..688 | 100 | | Plus |
BS06055.complete Sequence
704 bp (704 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635330
> BS06055.complete
GAAGTTATCAGTCGACATGGCACGAATCGTGTACGACGGCAAGTTCCATT
GCGGAGGATCCTTACTGACGAAGGATTACGTTCTATCGGCCGCTCACTGC
GTGAAGAAACTGCGAAAATCCAAAATCAGAGTCATATTCGGCGACCACGA
TCAAGAGATCACCTCGGAGTCACAGGCCATCCAACGTGCGGTTACGGCTG
TGATAAAGCACAAGAGCTTTGACCCCGATACATACAACAACGACATTGCC
CTGTTGCGACTTCGCAAGCCTATATCGTTTTCTAAAATTATAAAGCCAAT
CTGCCTACCGCGCTATAATTACGACCCCGCAGGTCGCATTGGAACGGTTG
TCGGCTGGGGACGGACATCCGAGGGAGGAGAACTACCATCCATAGTTAAT
CAAGTTAAGGTGCCAATCATGTCCATCACGGAATGCCGAAATCAAAGATA
CAAAAGTACTCGAATTACCTCATCCATGTTGTGTGCGGGTAGGCCTTCCA
TGGACTCATGCCAGGGCGACAGTGGAGGACCGCTGTTGCTATCCAATGGC
GTTAAGTATTTCATCGTCGGCATTGTGTCCTGGGGCGTTGGTTGCGGCCG
CGAAGGATATCCGGGTGTTTACTCCAGAGTGAGCAAATTCATACCGTGGA
TTAAGTCTAATTTAGAAAATACCTGCCTGTGTTCATAGAAGCTTTCTAGA
CCAT
BS06055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-RF | 672 | CG11836-PF | 1..672 | 17..688 | 3360 | 100 | Plus |
CG11836-RE | 672 | CG11836-PE | 1..672 | 17..688 | 3360 | 100 | Plus |
CG11836-RI | 846 | CG11836-PI | 175..846 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-RF | 1102 | CG11836-RF | 317..988 | 17..688 | 3360 | 100 | Plus |
CG11836-RE | 1076 | CG11836-RE | 291..962 | 17..688 | 3360 | 100 | Plus |
CG11836-RI | 1101 | CG11836-RI | 316..987 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25071810..25072127 | 17..334 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 25072318..25072598 | 408..688 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 25072185..25072266 | 331..412 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:59:56 has no hits.
BS06055.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:48 Download gff for
BS06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RC | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:48 Download gff for
BS06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RC | 305..976 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:20 Download gff for
BS06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..987 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:48 Download gff for
BS06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RC | 305..976 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:01 Download gff for
BS06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..987 | 17..688 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:01 Download gff for
BS06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25071810..25072125 | 17..332 | 100 | -> | Plus |
3R | 25072187..25072263 | 333..409 | 100 | -> | Plus |
3R | 25072320..25072598 | 410..688 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:20 Download gff for
BS06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20897532..20897847 | 17..332 | 100 | -> | Plus |
arm_3R | 20897909..20897985 | 333..409 | 100 | -> | Plus |
arm_3R | 20898042..20898320 | 410..688 | 100 | | Plus |
BS06055.pep Sequence
Translation from 16 to 687
> BS06055.pep
MARIVYDGKFHCGGSLLTKDYVLSAAHCVKKLRKSKIRVIFGDHDQEITS
ESQAIQRAVTAVIKHKSFDPDTYNNDIALLRLRKPISFSKIIKPICLPRY
NYDPAGRIGTVVGWGRTSEGGELPSIVNQVKVPIMSITECRNQRYKSTRI
TSSMLCAGRPSMDSCQGDSGGPLLLSNGVKYFIVGIVSWGVGCGREGYPG
VYSRVSKFIPWIKSNLENTCLCS*
BS06055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-PF | 223 | CG11836-PF | 1..223 | 1..223 | 1182 | 100 | Plus |
CG11836-PE | 223 | CG11836-PE | 1..223 | 1..223 | 1182 | 100 | Plus |
CG11836-PG | 223 | CG11836-PG | 1..223 | 1..223 | 1182 | 100 | Plus |
CG11836-PC | 223 | CG11836-PC | 1..223 | 1..223 | 1182 | 100 | Plus |
CG11836-PA | 223 | CG11836-PA | 1..223 | 1..223 | 1182 | 100 | Plus |