Clone Sequence Records
BS06061.3prime Sequence
636 bp (635 high quality bases) assembled on 2005-12-03
> BS06061.3prime
ATGGTCTAGAAAGCTTTTACGACAGGTAGCTAGGCGCTGCCTCGTAGCGA
CGCTGTATCTGATCATATGTGAACTTGACAAAGGCATCGTACTGCTCGGC
CAGCTTGGTGGTCAGCACGGACTCGTAGCGCTCCCTTAGCTGATTCTCGC
GCTCCTTGATCATGCTCTCGCAAATGAGCTGCACCTGCTTGAACGTGAAC
AGGGCCTTTTCGCCGTGGCGCATCAGGTTCTGTGGACTGTCCGGGCGGCG
CGGACTCTCTGGACCCATCTCCGATCCGCTGGACTCCGAATCCTGCATGC
GTTCCAAGGCCGACGAAGTGATCGGCAGCTGTTTGCGCTTGTGCAGTCTC
TTGATCTCATTGCACAAGCTCTCGGCCATTTTGTCTGGTGACATTTTGGC
CAGCGACGACTCACTGAACGGACTAGGTTCGGTGCTATCCTTGGCGAATC
GGTTGCTGGGCGTGTGGGGCAGACCAGCCGAGGTGCTGGGACCGTCGCGG
GATGGCGACGCTGGACCTGCATTGCTCCCAGCCTGGCCAAAGGGATTGCA
ACGCCGGCGCTTCGGAGGCCGCTGGTTCATCGACTCCCAGTCTAGGGCTC
GTTTCAGGGTTGCACAGGCCATGTCGACTGATAACT
BS06061.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8580-PA | 606 | bhr-RA | 1..606 | 622..17 | 3030 | 100 | Minus |
CG8580-PB | 606 | bhr-RB | 1..606 | 622..17 | 3030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
akirin-RF | 2080 | CG8580-RF | 355..961 | 622..16 | 3035 | 100 | Minus |
akirin-RE | 1127 | CG8580-RE | 330..936 | 622..16 | 3035 | 100 | Minus |
akirin-RD | 2196 | CG8580-RD | 471..1077 | 622..16 | 3035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7372160..7372519 | 387..28 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 7371835..7372072 | 622..385 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:07:11 has no hits.
BS06061.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:57 Download gff for
BS06061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bhr-PA | 1..606 | 17..622 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:09 Download gff for
BS06061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8580-PB | 1..606 | 17..622 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:40 Download gff for
BS06061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
akirin-RD | 462..1088 | 4..632 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:01:13 Download gff for
BS06061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
akirin-RD | 462..1088 | 4..632 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:01:13 Download gff for
BS06061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7371826..7372072 | 385..632 | 98 | -> | Minus |
3L | 7372163..7372519 | 28..384 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:40 Download gff for
BS06061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7364926..7365172 | 385..632 | 98 | -> | Minus |
arm_3L | 7365263..7365619 | 28..384 | 100 | -> | Minus |
BS06061.5prime Sequence
636 bp (635 high quality bases) assembled on 2005-12-03
> BS06061.5prime
GAAGTTATCAGTCGACATGGCCTGTGCAACCCTGAAACGAGCCCTAGACT
GGGAGTCGATGAACCAGCGGCCTCCGAAGCGCCGGCGTTGCAATCCCTTT
GGCCAGGCTGGGAGCAATGCAGGTCCAGCGTCGCCATCCCGCGACGGTCC
CAGCACCTCGGCTGGTCTGCCCCACACGCCCAGCAACCGATTCGCCAAGG
ATAGCACCGAACCTAGTCCGTTCAGTGAGTCGTCGCTGGCCAAAATGTCA
CCAGACAAAATGGCCGAGAGCTTGTGCAATGAGATCAAGAGACTGCACAA
GCGCAAACAGCTGCCGATCACTTCGTCGGCCTTGGAACGCATGCAGGATT
CGGAGTCCAGCGGATCGGAGATGGGTCCAGAGAGTCCGCGCCGCCCGGAC
AGTCCACAGAACCTGATGCGCCACGGCGAAAAGGCCCTGTTCACGTTCAA
GCAGGTGCAGCTCATTTGCGAGAGCATGATCAAGGAGCGCGAGAATCAGC
TAAGGGAGCGCTACGAGTCCGTGCTGACCACCAAGCTGGCCGAGCAGTAC
GATGCCTTTGTCAAGTTCACATATGATCAGATACAGCGTCGCTACGAGGC
AGCGCCTAGCTACCTGTCGTAAAAGCTTTCTAGACC
BS06061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8580-PA | 606 | bhr-RA | 1..606 | 17..622 | 3030 | 100 | Plus |
CG8580-PB | 606 | bhr-RB | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
akirin-RF | 2080 | CG8580-RF | 355..961 | 17..623 | 3035 | 100 | Plus |
akirin-RE | 1127 | CG8580-RE | 330..936 | 17..623 | 3035 | 100 | Plus |
akirin-RD | 2196 | CG8580-RD | 471..1077 | 17..623 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7372160..7372519 | 252..611 | 1800 | 100 | Plus |
3L | 28110227 | 3L | 7371835..7372072 | 17..254 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:51:52 has no hits.
BS06061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:58 Download gff for
BS06061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bhr-PA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:11 Download gff for
BS06061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8580-PB | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:54:38 Download gff for
BS06061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
akirin-RD | 462..1088 | 7..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:39:43 Download gff for
BS06061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
akirin-RD | 462..1088 | 7..636 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:39:43 Download gff for
BS06061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7371826..7372072 | 7..254 | 98 | -> | Plus |
3L | 7372163..7372519 | 255..611 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:54:38 Download gff for
BS06061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7364926..7365172 | 7..254 | 98 | -> | Plus |
arm_3L | 7365263..7365619 | 255..611 | 100 | -> | Plus |
BS06061.complete Sequence
638 bp (638 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635331
> BS06061.complete
GAAGTTATCAGTCGACATGGCCTGTGCAACCCTGAAACGAGCCCTAGACT
GGGAGTCGATGAACCAGCGGCCTCCGAAGCGCCGGCGTTGCAATCCCTTT
GGCCAGGCTGGGAGCAATGCAGGTCCAGCGTCGCCATCCCGCGACGGTCC
CAGCACCTCGGCTGGTCTGCCCCACACGCCCAGCAACCGATTCGCCAAGG
ATAGCACCGAACCTAGTCCGTTCAGTGAGTCGTCGCTGGCCAAAATGTCA
CCAGACAAAATGGCCGAGAGCTTGTGCAATGAGATCAAGAGACTGCACAA
GCGCAAACAGCTGCCGATCACTTCGTCGGCCTTGGAACGCATGCAGGATT
CGGAGTCCAGCGGATCGGAGATGGGTCCAGAGAGTCCGCGCCGCCCGGAC
AGTCCACAGAACCTGATGCGCCACGGCGAAAAGGCCCTGTTCACGTTCAA
GCAGGTGCAGCTCATTTGCGAGAGCATGATCAAGGAGCGCGAGAATCAGC
TAAGGGAGCGCTACGAGTCCGTGCTGACCACCAAGCTGGCCGAGCAGTAC
GATGCCTTTGTCAAGTTCACATATGATCAGATACAGCGTCGCTACGAGGC
AGCGCCTAGCTACCTGTCGTAAAAGCTTTCTAGACCAT
BS06061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
akirin-RF | 606 | CG8580-PF | 1..606 | 17..622 | 3030 | 100 | Plus |
akirin-RE | 606 | CG8580-PE | 1..606 | 17..622 | 3030 | 100 | Plus |
akirin-RD | 606 | CG8580-PD | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
akirin-RF | 2080 | CG8580-RF | 355..961 | 17..623 | 3035 | 100 | Plus |
akirin-RE | 1127 | CG8580-RE | 330..936 | 17..623 | 3035 | 100 | Plus |
akirin-RD | 2196 | CG8580-RD | 471..1077 | 17..623 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7372160..7372519 | 252..611 | 1800 | 100 | Plus |
3L | 28110227 | 3L | 7371835..7372072 | 17..254 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:58:26 has no hits.
BS06061.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:51 Download gff for
BS06061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bhr-RB | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:50 Download gff for
BS06061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
akirin-RB | 390..1016 | 7..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:05 Download gff for
BS06061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
akirin-RD | 471..1074 | 17..620 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:52 Download gff for
BS06061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bhr-RB | 390..1016 | 7..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:48 Download gff for
BS06061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
akirin-RD | 471..1074 | 17..620 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:48 Download gff for
BS06061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7371835..7372072 | 17..254 | 100 | -> | Plus |
3L | 7372163..7372522 | 255..616 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:05 Download gff for
BS06061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7364935..7365172 | 17..254 | 100 | -> | Plus |
arm_3L | 7365263..7365622 | 255..616 | 99 | | Plus |
BS06061.pep Sequence
Translation from 16 to 621
> BS06061.pep
MACATLKRALDWESMNQRPPKRRRCNPFGQAGSNAGPASPSRDGPSTSAG
LPHTPSNRFAKDSTEPSPFSESSLAKMSPDKMAESLCNEIKRLHKRKQLP
ITSSALERMQDSESSGSEMGPESPRRPDSPQNLMRHGEKALFTFKQVQLI
CESMIKERENQLRERYESVLTTKLAEQYDAFVKFTYDQIQRRYEAAPSYL
S*
BS06061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
akirin-PF | 201 | CG8580-PF | 1..201 | 1..201 | 1045 | 100 | Plus |
akirin-PE | 201 | CG8580-PE | 1..201 | 1..201 | 1045 | 100 | Plus |
akirin-PD | 201 | CG8580-PD | 1..201 | 1..201 | 1045 | 100 | Plus |
akirin-PC | 201 | CG8580-PC | 1..201 | 1..201 | 1045 | 100 | Plus |
akirin-PB | 201 | CG8580-PB | 1..201 | 1..201 | 1045 | 100 | Plus |