Clone BS06061 Report

Search the DGRC for BS06061

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:61
Vector:pDNR-Dual
Associated Gene/Transcriptakirin-RB
Protein status:BS06061.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06061.3prime Sequence

636 bp (635 high quality bases) assembled on 2005-12-03

> BS06061.3prime
ATGGTCTAGAAAGCTTTTACGACAGGTAGCTAGGCGCTGCCTCGTAGCGA
CGCTGTATCTGATCATATGTGAACTTGACAAAGGCATCGTACTGCTCGGC
CAGCTTGGTGGTCAGCACGGACTCGTAGCGCTCCCTTAGCTGATTCTCGC
GCTCCTTGATCATGCTCTCGCAAATGAGCTGCACCTGCTTGAACGTGAAC
AGGGCCTTTTCGCCGTGGCGCATCAGGTTCTGTGGACTGTCCGGGCGGCG
CGGACTCTCTGGACCCATCTCCGATCCGCTGGACTCCGAATCCTGCATGC
GTTCCAAGGCCGACGAAGTGATCGGCAGCTGTTTGCGCTTGTGCAGTCTC
TTGATCTCATTGCACAAGCTCTCGGCCATTTTGTCTGGTGACATTTTGGC
CAGCGACGACTCACTGAACGGACTAGGTTCGGTGCTATCCTTGGCGAATC
GGTTGCTGGGCGTGTGGGGCAGACCAGCCGAGGTGCTGGGACCGTCGCGG
GATGGCGACGCTGGACCTGCATTGCTCCCAGCCTGGCCAAAGGGATTGCA
ACGCCGGCGCTTCGGAGGCCGCTGGTTCATCGACTCCCAGTCTAGGGCTC
GTTTCAGGGTTGCACAGGCCATGTCGACTGATAACT

BS06061.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8580-PA 606 bhr-RA 1..606 622..17 3030 100 Minus
CG8580-PB 606 bhr-RB 1..606 622..17 3030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
akirin-RF 2080 CG8580-RF 355..961 622..16 3035 100 Minus
akirin-RE 1127 CG8580-RE 330..936 622..16 3035 100 Minus
akirin-RD 2196 CG8580-RD 471..1077 622..16 3035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7372160..7372519 387..28 1800 100 Minus
3L 28110227 3L 7371835..7372072 622..385 1190 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:07:11 has no hits.

BS06061.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:57 Download gff for BS06061.3prime
Subject Subject Range Query Range Percent Splice Strand
bhr-PA 1..606 17..622 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:09 Download gff for BS06061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8580-PB 1..606 17..622 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:40 Download gff for BS06061.3prime
Subject Subject Range Query Range Percent Splice Strand
akirin-RD 462..1088 4..632 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:01:13 Download gff for BS06061.3prime
Subject Subject Range Query Range Percent Splice Strand
akirin-RD 462..1088 4..632 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:01:13 Download gff for BS06061.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7371826..7372072 385..632 98 -> Minus
3L 7372163..7372519 28..384 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:40 Download gff for BS06061.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7364926..7365172 385..632 98 -> Minus
arm_3L 7365263..7365619 28..384 100 -> Minus

BS06061.5prime Sequence

636 bp (635 high quality bases) assembled on 2005-12-03

> BS06061.5prime
GAAGTTATCAGTCGACATGGCCTGTGCAACCCTGAAACGAGCCCTAGACT
GGGAGTCGATGAACCAGCGGCCTCCGAAGCGCCGGCGTTGCAATCCCTTT
GGCCAGGCTGGGAGCAATGCAGGTCCAGCGTCGCCATCCCGCGACGGTCC
CAGCACCTCGGCTGGTCTGCCCCACACGCCCAGCAACCGATTCGCCAAGG
ATAGCACCGAACCTAGTCCGTTCAGTGAGTCGTCGCTGGCCAAAATGTCA
CCAGACAAAATGGCCGAGAGCTTGTGCAATGAGATCAAGAGACTGCACAA
GCGCAAACAGCTGCCGATCACTTCGTCGGCCTTGGAACGCATGCAGGATT
CGGAGTCCAGCGGATCGGAGATGGGTCCAGAGAGTCCGCGCCGCCCGGAC
AGTCCACAGAACCTGATGCGCCACGGCGAAAAGGCCCTGTTCACGTTCAA
GCAGGTGCAGCTCATTTGCGAGAGCATGATCAAGGAGCGCGAGAATCAGC
TAAGGGAGCGCTACGAGTCCGTGCTGACCACCAAGCTGGCCGAGCAGTAC
GATGCCTTTGTCAAGTTCACATATGATCAGATACAGCGTCGCTACGAGGC
AGCGCCTAGCTACCTGTCGTAAAAGCTTTCTAGACC

BS06061.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8580-PA 606 bhr-RA 1..606 17..622 3030 100 Plus
CG8580-PB 606 bhr-RB 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
akirin-RF 2080 CG8580-RF 355..961 17..623 3035 100 Plus
akirin-RE 1127 CG8580-RE 330..936 17..623 3035 100 Plus
akirin-RD 2196 CG8580-RD 471..1077 17..623 3035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7372160..7372519 252..611 1800 100 Plus
3L 28110227 3L 7371835..7372072 17..254 1190 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:51:52 has no hits.

BS06061.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:29:58 Download gff for BS06061.5prime
Subject Subject Range Query Range Percent Splice Strand
bhr-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:11 Download gff for BS06061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8580-PB 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:54:38 Download gff for BS06061.5prime
Subject Subject Range Query Range Percent Splice Strand
akirin-RD 462..1088 7..636 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:39:43 Download gff for BS06061.5prime
Subject Subject Range Query Range Percent Splice Strand
akirin-RD 462..1088 7..636 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:39:43 Download gff for BS06061.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7371826..7372072 7..254 98 -> Plus
3L 7372163..7372519 255..611 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:54:38 Download gff for BS06061.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7364926..7365172 7..254 98 -> Plus
arm_3L 7365263..7365619 255..611 100 -> Plus

BS06061.complete Sequence

638 bp (638 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635331

> BS06061.complete
GAAGTTATCAGTCGACATGGCCTGTGCAACCCTGAAACGAGCCCTAGACT
GGGAGTCGATGAACCAGCGGCCTCCGAAGCGCCGGCGTTGCAATCCCTTT
GGCCAGGCTGGGAGCAATGCAGGTCCAGCGTCGCCATCCCGCGACGGTCC
CAGCACCTCGGCTGGTCTGCCCCACACGCCCAGCAACCGATTCGCCAAGG
ATAGCACCGAACCTAGTCCGTTCAGTGAGTCGTCGCTGGCCAAAATGTCA
CCAGACAAAATGGCCGAGAGCTTGTGCAATGAGATCAAGAGACTGCACAA
GCGCAAACAGCTGCCGATCACTTCGTCGGCCTTGGAACGCATGCAGGATT
CGGAGTCCAGCGGATCGGAGATGGGTCCAGAGAGTCCGCGCCGCCCGGAC
AGTCCACAGAACCTGATGCGCCACGGCGAAAAGGCCCTGTTCACGTTCAA
GCAGGTGCAGCTCATTTGCGAGAGCATGATCAAGGAGCGCGAGAATCAGC
TAAGGGAGCGCTACGAGTCCGTGCTGACCACCAAGCTGGCCGAGCAGTAC
GATGCCTTTGTCAAGTTCACATATGATCAGATACAGCGTCGCTACGAGGC
AGCGCCTAGCTACCTGTCGTAAAAGCTTTCTAGACCAT

BS06061.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
akirin-RF 606 CG8580-PF 1..606 17..622 3030 100 Plus
akirin-RE 606 CG8580-PE 1..606 17..622 3030 100 Plus
akirin-RD 606 CG8580-PD 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
akirin-RF 2080 CG8580-RF 355..961 17..623 3035 100 Plus
akirin-RE 1127 CG8580-RE 330..936 17..623 3035 100 Plus
akirin-RD 2196 CG8580-RD 471..1077 17..623 3035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7372160..7372519 252..611 1800 100 Plus
3L 28110227 3L 7371835..7372072 17..254 1190 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:58:26 has no hits.

BS06061.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:51 Download gff for BS06061.complete
Subject Subject Range Query Range Percent Splice Strand
bhr-RB 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:50 Download gff for BS06061.complete
Subject Subject Range Query Range Percent Splice Strand
akirin-RB 390..1016 7..635 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:05 Download gff for BS06061.complete
Subject Subject Range Query Range Percent Splice Strand
akirin-RD 471..1074 17..620 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:52 Download gff for BS06061.complete
Subject Subject Range Query Range Percent Splice Strand
bhr-RB 390..1016 7..635 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:48 Download gff for BS06061.complete
Subject Subject Range Query Range Percent Splice Strand
akirin-RD 471..1074 17..620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:48 Download gff for BS06061.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7371835..7372072 17..254 100 -> Plus
3L 7372163..7372522 255..616 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:05 Download gff for BS06061.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7364935..7365172 17..254 100 -> Plus
arm_3L 7365263..7365622 255..616 99   Plus

BS06061.pep Sequence

Translation from 16 to 621

> BS06061.pep
MACATLKRALDWESMNQRPPKRRRCNPFGQAGSNAGPASPSRDGPSTSAG
LPHTPSNRFAKDSTEPSPFSESSLAKMSPDKMAESLCNEIKRLHKRKQLP
ITSSALERMQDSESSGSEMGPESPRRPDSPQNLMRHGEKALFTFKQVQLI
CESMIKERENQLRERYESVLTTKLAEQYDAFVKFTYDQIQRRYEAAPSYL
S*

BS06061.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
akirin-PF 201 CG8580-PF 1..201 1..201 1045 100 Plus
akirin-PE 201 CG8580-PE 1..201 1..201 1045 100 Plus
akirin-PD 201 CG8580-PD 1..201 1..201 1045 100 Plus
akirin-PC 201 CG8580-PC 1..201 1..201 1045 100 Plus
akirin-PB 201 CG8580-PB 1..201 1..201 1045 100 Plus