Clone BS06063 Report

Search the DGRC for BS06063

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG8237-RA
Protein status:BS06063.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06063.3prime Sequence

814 bp (778 high quality bases) assembled on 2005-12-03

> BS06063.3prime
ATGGTCTAGAAAGCTTTCAGCGATTATTGCGCTGCGCTTGCCCTTGGGTG
CGGAACACGGCAATGGAATTGCTCTCCACCACAATCGTTTTGGTTAGGAC
GTCGTAGGCGGTGCGATTGTTCTTGAAGAAGACCATCAACACGCAAATGG
GGAAGAGCAGGGTCATCCCCAGGTTCTTGATCAGCGCGCGGGCGAAGGAG
CGCATCAGCGAGGGAGTCTGTGGCGGATAAAGCAGAGCCCTCATCGGCTC
CCTCTGCGGCTGGAGGACGAACTGTGGAAGGGGCGGCCCCTGAAGCGGCA
TCACTGCTTCCACATAGTATATGCGTATCTTCATCAGCGACTTGCCCGGC
GTAGCCCCTTGGTATAGGTATGTCCACAGCGCTTCGTAGCAGCAAACGAT
GAACTTGGTCAGCATTTCGATTAGCAGGAGGTCGGTGGACATCGAAATAA
AATCTAGTGATGTGTCAAAGAAGTTCGAAAAGAGGTCTTCTTGGTCCAGG
GTGCGCCGAATCACGTCCTCATCGAACTCTATGTTGAACAGGTTGACCAC
CCCGAAGGTAATGATGATTTTCACAATGAAAAGGATGAACATATCGATGG
TCTCCGCCACGGCGCGCTTCCAAAAAGGTGACAGAACGTACTCGTAGCCG
CCAAGACGCTGTATGATATCCAGCTGGGCCGCCTCGCCCAATATCCGCAG
GCCGCTGAAGTTTGGCGCAGGCAAACGAGGCTCTGCAGCTGGTTCTCCCG
GCGCAGCAGCCGAGCCCTGAACCAGTGCTTGGGGTTGTCCCATGGCGGCT
GCTTGGAGAGCAGC

BS06063.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8237-PA 978 CG8237-RA 181..978 814..17 3990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8237-RA 1220 CG8237-RA 272..1069 814..17 3990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8925942..8926739 814..17 3990 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:51:46 has no hits.

BS06063.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:01 Download gff for BS06063.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8237-PA 181..978 17..814 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:15 Download gff for BS06063.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8237-PA 181..978 17..814 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:47:17 Download gff for BS06063.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8237-RA 272..1069 17..814 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:50 Download gff for BS06063.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8237-RA 272..1069 17..814 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:50 Download gff for BS06063.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8925942..8926739 17..814 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:47:17 Download gff for BS06063.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4813447..4814244 17..814 100   Minus

BS06063.5prime Sequence

881 bp (718 high quality bases) assembled on 2005-12-03

> BS06063.5prime
GAAGTTATCAGTCGACATGGGTGAACAAGGCGAGGAGACGGGTCAGAAGC
TTACGGAGCGCTCCACCAAGGAAGCCTACTTCGAAAGCCTCGCCGAGTGG
GCCAAACAGGCGACGCTGGCCCAGAATGCGATGCTCATGTTTCCCTACTA
CCTGATGGCCAACTACCCGACCATGTTCCCGGGACTGCCTTCTTCCGCTG
CTCTCCAAGCAGCCGCCATGGGACAACCCCAAGCACTGGTTCAGGGCTCG
GCTGCTGCGCCGGGAGAACCAGCTGCAGAGCCTCGTTTGCCTGCGCCAAA
CTTCAGCGGCCTGCGGATATTGGGCGAGGCGGCCCAGCTGGATATCATAC
AGCGTCTTGGCGGCTACGAGTACGTTCTGTCACCTTTTTGGAAGCGCGCC
GTGGCGGAGACCATCGATATGTTCATCCTTTTCATTGTGAAAATCATCAT
TACCTTCGGGGTGGTCAACCTGTTCAACATAGAGTTCGATGAGGACGTGA
TTCGGCGCACCCTGGACCAAGAAGACCTCTTTTCGAACTTCTTTGACACA
TCACTAGATTTTATTTCGATGTCCACCGACCTCCTGCTAATCGAAATGCT
GACCAAGTTCATCGTTTGCTGCTACGAAGCGCTGTGGACATACCTATACC
AAGGGGCTACGCCGGGCAAGTCGCTGATGAAGATACGCATATACTATGTG
GAAGCAGTGATGCCGCTTCAGGGGCCGCCCCTTCCACAGTTCGTCCTCCA
GCCGCAGAGGGAGCCGATGAGGGCTCTGCTTTATCCGCCACAGACTCCCT
CGCTGATGCGCTCCTTCGCCCGCGCGCTGATCAGGAACCTGGGGATGACC
CTGCTCTTCCCCATTTGCGTGGTGATGGTCT

BS06063.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8237-PA 978 CG8237-RA 1..865 17..881 4275 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8237-RA 1220 CG8237-RA 92..956 17..881 4295 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8925762..8926626 17..881 4295 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 06:58:11 has no hits.

BS06063.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:02 Download gff for BS06063.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8237-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:16 Download gff for BS06063.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8237-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:30 Download gff for BS06063.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8237-RA 87..956 10..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:26:54 Download gff for BS06063.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8237-RA 87..956 10..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:26:54 Download gff for BS06063.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8925757..8926626 10..881 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:30 Download gff for BS06063.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4813262..4814131 10..881 99   Plus

BS06063.complete Sequence

1010 bp (1010 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635332

> BS06063.complete
GAAGTTATCAGTCGACATGGGTGAACAAGGCGAGGAGACGGGTCAGAAGC
TTACGGAGCGCTCCACCAAGGAAGCCTACTTCGAAAGCCTCGCCGAGTGG
GCCAAACAGGCGACGCTGGCCCAGAATGCGATGCTCATGTTTCCCTACTA
CCTGATGGCCAACTACCCGACCATGTTCCCGGGACTGCCTTCTTCCGCTG
CTCTCCAAGCAGCCGCCATGGGACAACCCCAAGCACTGGTTCAGGGCTCG
GCTGCTGCGCCGGGAGAACCAGCTGCAGAGCCTCGTTTGCCTGCGCCAAA
CTTCAGCGGCCTGCGGATATTGGGCGAGGCGGCCCAGCTGGATATCATAC
AGCGTCTTGGCGGCTACGAGTACGTTCTGTCACCTTTTTGGAAGCGCGCC
GTGGCGGAGACCATCGATATGTTCATCCTTTTCATTGTGAAAATCATCAT
TACCTTCGGGGTGGTCAACCTGTTCAACATAGAGTTCGATGAGGACGTGA
TTCGGCGCACCCTGGACCAAGAAGACCTCTTTTCGAACTTCTTTGACACA
TCACTAGATTTTATTTCGATGTCCACCGACCTCCTGCTAATCGAAATGCT
GACCAAGTTCATCGTTTGCTGCTACGAAGCGCTGTGGACATACCTATACC
AAGGGGCTACGCCGGGCAAGTCGCTGATGAAGATACGCATATACTATGTG
GAAGCAGTGATGCCGCTTCAGGGGCCGCCCCTTCCACAGTTCGTCCTCCA
GCCGCAGAGGGAGCCGATGAGGGCTCTGCTTTATCCGCCACAGACTCCCT
CGCTGATGCGCTCCTTCGCCCGCGCGCTGATCAAGAACCTGGGGATGACC
CTGCTCTTCCCCATTTGCGTGTTGATGGTCTTCTTCAAGAACAATCGCAC
CGCCTACGACGTCCTAACCAAAACGATTGTGGTGGAGAGCAATTCCATTG
CCGTGTTCCGCACCCAAGGGCAAGCGCAGCGCAATAATCGCTGAAAGCTT
TCTAGACCAT

BS06063.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8237-RA 978 CG8237-PA 1..978 17..994 4890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8237-RA 1220 CG8237-RA 92..1069 17..994 4890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8925762..8926739 17..994 4890 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:21:50 has no hits.

BS06063.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:31 Download gff for BS06063.complete
Subject Subject Range Query Range Percent Splice Strand
CG8237-RA 1..978 17..994 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:27 Download gff for BS06063.complete
Subject Subject Range Query Range Percent Splice Strand
CG8237-RA 69..1051 10..994 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:03 Download gff for BS06063.complete
Subject Subject Range Query Range Percent Splice Strand
CG8237-RA 92..1068 17..993 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:31 Download gff for BS06063.complete
Subject Subject Range Query Range Percent Splice Strand
CG8237-RA 69..1051 10..994 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:37 Download gff for BS06063.complete
Subject Subject Range Query Range Percent Splice Strand
CG8237-RA 92..1068 17..993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:37 Download gff for BS06063.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8925762..8926738 17..993 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:03 Download gff for BS06063.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4813267..4814243 17..993 100   Plus

BS06063.pep Sequence

Translation from 16 to 993

> BS06063.pep
MGEQGEETGQKLTERSTKEAYFESLAEWAKQATLAQNAMLMFPYYLMANY
PTMFPGLPSSAALQAAAMGQPQALVQGSAAAPGEPAAEPRLPAPNFSGLR
ILGEAAQLDIIQRLGGYEYVLSPFWKRAVAETIDMFILFIVKIIITFGVV
NLFNIEFDEDVIRRTLDQEDLFSNFFDTSLDFISMSTDLLLIEMLTKFIV
CCYEALWTYLYQGATPGKSLMKIRIYYVEAVMPLQGPPLPQFVLQPQREP
MRALLYPPQTPSLMRSFARALIKNLGMTLLFPICVLMVFFKNNRTAYDVL
TKTIVVESNSIAVFRTQGQAQRNNR*

BS06063.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8237-PA 325 CG8237-PA 1..325 1..325 1662 100 Plus