Clone Sequence Records
BS06063.3prime Sequence
814 bp (778 high quality bases) assembled on 2005-12-03
> BS06063.3prime
ATGGTCTAGAAAGCTTTCAGCGATTATTGCGCTGCGCTTGCCCTTGGGTG
CGGAACACGGCAATGGAATTGCTCTCCACCACAATCGTTTTGGTTAGGAC
GTCGTAGGCGGTGCGATTGTTCTTGAAGAAGACCATCAACACGCAAATGG
GGAAGAGCAGGGTCATCCCCAGGTTCTTGATCAGCGCGCGGGCGAAGGAG
CGCATCAGCGAGGGAGTCTGTGGCGGATAAAGCAGAGCCCTCATCGGCTC
CCTCTGCGGCTGGAGGACGAACTGTGGAAGGGGCGGCCCCTGAAGCGGCA
TCACTGCTTCCACATAGTATATGCGTATCTTCATCAGCGACTTGCCCGGC
GTAGCCCCTTGGTATAGGTATGTCCACAGCGCTTCGTAGCAGCAAACGAT
GAACTTGGTCAGCATTTCGATTAGCAGGAGGTCGGTGGACATCGAAATAA
AATCTAGTGATGTGTCAAAGAAGTTCGAAAAGAGGTCTTCTTGGTCCAGG
GTGCGCCGAATCACGTCCTCATCGAACTCTATGTTGAACAGGTTGACCAC
CCCGAAGGTAATGATGATTTTCACAATGAAAAGGATGAACATATCGATGG
TCTCCGCCACGGCGCGCTTCCAAAAAGGTGACAGAACGTACTCGTAGCCG
CCAAGACGCTGTATGATATCCAGCTGGGCCGCCTCGCCCAATATCCGCAG
GCCGCTGAAGTTTGGCGCAGGCAAACGAGGCTCTGCAGCTGGTTCTCCCG
GCGCAGCAGCCGAGCCCTGAACCAGTGCTTGGGGTTGTCCCATGGCGGCT
GCTTGGAGAGCAGC
BS06063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8237-PA | 978 | CG8237-RA | 181..978 | 814..17 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8237-RA | 1220 | CG8237-RA | 272..1069 | 814..17 | 3990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8925942..8926739 | 814..17 | 3990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:51:46 has no hits.
BS06063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:01 Download gff for
BS06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-PA | 181..978 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:15 Download gff for
BS06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-PA | 181..978 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:47:17 Download gff for
BS06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-RA | 272..1069 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:50 Download gff for
BS06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-RA | 272..1069 | 17..814 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:50 Download gff for
BS06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8925942..8926739 | 17..814 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:47:17 Download gff for
BS06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4813447..4814244 | 17..814 | 100 | | Minus |
BS06063.5prime Sequence
881 bp (718 high quality bases) assembled on 2005-12-03
> BS06063.5prime
GAAGTTATCAGTCGACATGGGTGAACAAGGCGAGGAGACGGGTCAGAAGC
TTACGGAGCGCTCCACCAAGGAAGCCTACTTCGAAAGCCTCGCCGAGTGG
GCCAAACAGGCGACGCTGGCCCAGAATGCGATGCTCATGTTTCCCTACTA
CCTGATGGCCAACTACCCGACCATGTTCCCGGGACTGCCTTCTTCCGCTG
CTCTCCAAGCAGCCGCCATGGGACAACCCCAAGCACTGGTTCAGGGCTCG
GCTGCTGCGCCGGGAGAACCAGCTGCAGAGCCTCGTTTGCCTGCGCCAAA
CTTCAGCGGCCTGCGGATATTGGGCGAGGCGGCCCAGCTGGATATCATAC
AGCGTCTTGGCGGCTACGAGTACGTTCTGTCACCTTTTTGGAAGCGCGCC
GTGGCGGAGACCATCGATATGTTCATCCTTTTCATTGTGAAAATCATCAT
TACCTTCGGGGTGGTCAACCTGTTCAACATAGAGTTCGATGAGGACGTGA
TTCGGCGCACCCTGGACCAAGAAGACCTCTTTTCGAACTTCTTTGACACA
TCACTAGATTTTATTTCGATGTCCACCGACCTCCTGCTAATCGAAATGCT
GACCAAGTTCATCGTTTGCTGCTACGAAGCGCTGTGGACATACCTATACC
AAGGGGCTACGCCGGGCAAGTCGCTGATGAAGATACGCATATACTATGTG
GAAGCAGTGATGCCGCTTCAGGGGCCGCCCCTTCCACAGTTCGTCCTCCA
GCCGCAGAGGGAGCCGATGAGGGCTCTGCTTTATCCGCCACAGACTCCCT
CGCTGATGCGCTCCTTCGCCCGCGCGCTGATCAGGAACCTGGGGATGACC
CTGCTCTTCCCCATTTGCGTGGTGATGGTCT
BS06063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8237-PA | 978 | CG8237-RA | 1..865 | 17..881 | 4275 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8237-RA | 1220 | CG8237-RA | 92..956 | 17..881 | 4295 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8925762..8926626 | 17..881 | 4295 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:58:11 has no hits.
BS06063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:02 Download gff for
BS06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:16 Download gff for
BS06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:30 Download gff for
BS06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-RA | 87..956 | 10..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:26:54 Download gff for
BS06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-RA | 87..956 | 10..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:26:54 Download gff for
BS06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8925757..8926626 | 10..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:30 Download gff for
BS06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4813262..4814131 | 10..881 | 99 | | Plus |
BS06063.complete Sequence
1010 bp (1010 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635332
> BS06063.complete
GAAGTTATCAGTCGACATGGGTGAACAAGGCGAGGAGACGGGTCAGAAGC
TTACGGAGCGCTCCACCAAGGAAGCCTACTTCGAAAGCCTCGCCGAGTGG
GCCAAACAGGCGACGCTGGCCCAGAATGCGATGCTCATGTTTCCCTACTA
CCTGATGGCCAACTACCCGACCATGTTCCCGGGACTGCCTTCTTCCGCTG
CTCTCCAAGCAGCCGCCATGGGACAACCCCAAGCACTGGTTCAGGGCTCG
GCTGCTGCGCCGGGAGAACCAGCTGCAGAGCCTCGTTTGCCTGCGCCAAA
CTTCAGCGGCCTGCGGATATTGGGCGAGGCGGCCCAGCTGGATATCATAC
AGCGTCTTGGCGGCTACGAGTACGTTCTGTCACCTTTTTGGAAGCGCGCC
GTGGCGGAGACCATCGATATGTTCATCCTTTTCATTGTGAAAATCATCAT
TACCTTCGGGGTGGTCAACCTGTTCAACATAGAGTTCGATGAGGACGTGA
TTCGGCGCACCCTGGACCAAGAAGACCTCTTTTCGAACTTCTTTGACACA
TCACTAGATTTTATTTCGATGTCCACCGACCTCCTGCTAATCGAAATGCT
GACCAAGTTCATCGTTTGCTGCTACGAAGCGCTGTGGACATACCTATACC
AAGGGGCTACGCCGGGCAAGTCGCTGATGAAGATACGCATATACTATGTG
GAAGCAGTGATGCCGCTTCAGGGGCCGCCCCTTCCACAGTTCGTCCTCCA
GCCGCAGAGGGAGCCGATGAGGGCTCTGCTTTATCCGCCACAGACTCCCT
CGCTGATGCGCTCCTTCGCCCGCGCGCTGATCAAGAACCTGGGGATGACC
CTGCTCTTCCCCATTTGCGTGTTGATGGTCTTCTTCAAGAACAATCGCAC
CGCCTACGACGTCCTAACCAAAACGATTGTGGTGGAGAGCAATTCCATTG
CCGTGTTCCGCACCCAAGGGCAAGCGCAGCGCAATAATCGCTGAAAGCTT
TCTAGACCAT
BS06063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8237-RA | 978 | CG8237-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8237-RA | 1220 | CG8237-RA | 92..1069 | 17..994 | 4890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8925762..8926739 | 17..994 | 4890 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:21:50 has no hits.
BS06063.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:31 Download gff for
BS06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-RA | 1..978 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:27 Download gff for
BS06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-RA | 69..1051 | 10..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:03 Download gff for
BS06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-RA | 92..1068 | 17..993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:31 Download gff for
BS06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-RA | 69..1051 | 10..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:37 Download gff for
BS06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8237-RA | 92..1068 | 17..993 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:37 Download gff for
BS06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8925762..8926738 | 17..993 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:03 Download gff for
BS06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4813267..4814243 | 17..993 | 100 | | Plus |
BS06063.pep Sequence
Translation from 16 to 993
> BS06063.pep
MGEQGEETGQKLTERSTKEAYFESLAEWAKQATLAQNAMLMFPYYLMANY
PTMFPGLPSSAALQAAAMGQPQALVQGSAAAPGEPAAEPRLPAPNFSGLR
ILGEAAQLDIIQRLGGYEYVLSPFWKRAVAETIDMFILFIVKIIITFGVV
NLFNIEFDEDVIRRTLDQEDLFSNFFDTSLDFISMSTDLLLIEMLTKFIV
CCYEALWTYLYQGATPGKSLMKIRIYYVEAVMPLQGPPLPQFVLQPQREP
MRALLYPPQTPSLMRSFARALIKNLGMTLLFPICVLMVFFKNNRTAYDVL
TKTIVVESNSIAVFRTQGQAQRNNR*
BS06063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8237-PA | 325 | CG8237-PA | 1..325 | 1..325 | 1662 | 100 | Plus |