Clone Sequence Records
BS06065.5prime Sequence
732 bp (731 high quality bases) assembled on 2005-12-03
> BS06065.5prime
GAAGTTATCAGTCGACATGTCATCTCTGCGCTTAACTCAACAACAGCGCA
ATCATTTGAGCCTGCTCCAAAAACCCGCCAGCGCTGTGGTGGAGCTGTGC
AAGTCCGCCTTTGATTACCTAATAAATGGACCCAATCCCAGCCGTTACGA
GATGCTAGCCAAAAAGTCCTCCGATTTGGGCAGTCCTGAGGCAGTGCAGC
AGGCGGTGGAGGCGCTGATATCCCTGCTCATCAGCGTGACCACCCGAGTG
GGGAGCAGTTCCGTCGACATGGAGGCCATACTGCGCCAGACATTCCCCGA
ACTCGGCGACGATGTGATAGAAGTTCTCGAGCAGTTCGTCACCAGCAAAC
GAAACTTTGTGGAGGGCTCAATCAAGTCGGCCAACATACGTGCCTATCGG
CTGGTCAACCTGGACTGGCGACTGGAGGTGCGCACCGCGTCGCGGAGCCT
GCTGGATCAGTGTCAGGTGGTGGTGACTATGAAGCTATATCTGCACACCG
AACCGAAGAATGAAAACCGAGAGCTGCTGGCGGTGGACATCTCCGGGCGC
AGCGAACAGGAGCTGAAGGCCATGCAGGAGGACGAGCGGCTGCATCGAAA
GGATTTGCTAGTGCAGACGGATGTCTGCAGTCTGGTGCACATGATCAAAA
CGCTGGAGGACGCGTTGGCCGAGTCCAAGACGCGGCGCATTCGCAATATT
GTCGACGGAATACACTGAAAGCTTTCTAGACC
BS06065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7168-PA | 702 | CG7168-RA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7168-RA | 1034 | CG7168-RA | 259..960 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18224976..18225677 | 718..17 | 3510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:49:33 has no hits.
BS06065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:07 Download gff for
BS06065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:22 Download gff for
BS06065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:00:46 Download gff for
BS06065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-RA | 259..960 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:55 Download gff for
BS06065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-RA | 259..960 | 17..718 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:55 Download gff for
BS06065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18224976..18225677 | 17..718 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:00:46 Download gff for
BS06065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14050698..14051399 | 17..718 | 100 | | Minus |
BS06065.3prime Sequence
732 bp (731 high quality bases) assembled on 2005-12-03
> BS06065.3prime
ATGGTCTAGAAAGCTTTCAGTGTATTCCGTCGACAATATTGCGAATGCGC
CGCGTCTTGGACTCGGCCAACGCGTCCTCCAGCGTTTTGATCATGTGCAC
CAGACTGCAGACATCCGTCTGCACTAGCAAATCCTTTCGATGCAGCCGCT
CGTCCTCCTGCATGGCCTTCAGCTCCTGTTCGCTGCGCCCGGAGATGTCC
ACCGCCAGCAGCTCTCGGTTTTCATTCTTCGGTTCGGTGTGCAGATATAG
CTTCATAGTCACCACCACCTGACACTGATCCAGCAGGCTCCGCGACGCGG
TGCGCACCTCCAGTCGCCAGTCCAGGTTGACCAGCCGATAGGCACGTATG
TTGGCCGACTTGATTGAGCCCTCCACAAAGTTTCGTTTGCTGGTGACGAA
CTGCTCGAGAACTTCTATCACATCGTCGCCGAGTTCGGGGAATGTCTGGC
GCAGTATGGCCTCCATGTCGACGGAACTGCTCCCCACTCGGGTGGTCACG
CTGATGAGCAGGGATATCAGCGCCTCCACCGCCTGCTGCACTGCCTCAGG
ACTGCCCAAATCGGAGGACTTTTTGGCTAGCATCTCGTAACGGCTGGGAT
TGGGTCCATTTATTAGGTAATCAAAGGCGGACTTGCACAGCTCCACCACA
GCGCTGGCGGGTTTTTGGAGCAGGCTCAAATGATTGCGCTGTTGTTGAGT
TAAGCGCAGAGATGACATGTCGACTGATAACT
BS06065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7168-PA | 702 | CG7168-RA | 1..702 | 718..17 | 3510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7168-RA | 1034 | CG7168-RA | 259..960 | 718..17 | 3510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18224976..18225677 | 17..718 | 3510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:34:50 has no hits.
BS06065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:05 Download gff for
BS06065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-PA | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:20 Download gff for
BS06065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-PA | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:52:02 Download gff for
BS06065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-RA | 259..960 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:07 Download gff for
BS06065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-RA | 259..960 | 17..718 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:07 Download gff for
BS06065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18224976..18225677 | 17..718 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:52:02 Download gff for
BS06065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14050698..14051399 | 17..718 | 100 | | Plus |
BS06065.complete Sequence
734 bp (734 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635333
> BS06065.complete
GAAGTTATCAGTCGACATGTCATCTCTGCGCTTAACTCAACAACAGCGCA
ATCATTTGAGCCTGCTCCAAAAACCCGCCAGCGCTGTGGTGGAGCTGTGC
AAGTCCGCCTTTGATTACCTAATAAATGGACCCAATCCCAGCCGTTACGA
GATGCTAGCCAAAAAGTCCTCCGATTTGGGCAGTCCTGAGGCAGTGCAGC
AGGCGGTGGAGGCGCTGATATCCCTGCTCATCAGCGTGACCACCCGAGTG
GGGAGCAGTTCCGTCGACATGGAGGCCATACTGCGCCAGACATTCCCCGA
ACTCGGCGACGATGTGATAGAAGTTCTCGAGCAGTTCGTCACCAGCAAAC
GAAACTTTGTGGAGGGCTCAATCAAGTCGGCCAACATACGTGCCTATCGG
CTGGTCAACCTGGACTGGCGACTGGAGGTGCGCACCGCGTCGCGGAGCCT
GCTGGATCAGTGTCAGGTGGTGGTGACTATGAAGCTATATCTGCACACCG
AACCGAAGAATGAAAACCGAGAGCTGCTGGCGGTGGACATCTCCGGGCGC
AGCGAACAGGAGCTGAAGGCCATGCAGGAGGACGAGCGGCTGCATCGAAA
GGATTTGCTAGTGCAGACGGATGTCTGCAGTCTGGTGCACATGATCAAAA
CGCTGGAGGACGCGTTGGCCGAGTCCAAGACGCGGCGCATTCGCAATATT
GTCGACGGAATACACTGAAAGCTTTCTAGACCAT
BS06065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7168-RA | 702 | CG7168-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7168-RA | 1034 | CG7168-RA | 259..960 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18224976..18225677 | 718..17 | 3510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:48:15 has no hits.
BS06065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:05 Download gff for
BS06065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-RA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:48 Download gff for
BS06065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-RA | 204..905 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:57 Download gff for
BS06065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-RA | 259..959 | 17..717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:05 Download gff for
BS06065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-RA | 204..905 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:05 Download gff for
BS06065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7168-RA | 259..959 | 17..717 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:05 Download gff for
BS06065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18224977..18225677 | 17..717 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:57 Download gff for
BS06065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14050699..14051399 | 17..717 | 100 | | Minus |
BS06065.pep Sequence
Translation from 16 to 717
> BS06065.pep
MSSLRLTQQQRNHLSLLQKPASAVVELCKSAFDYLINGPNPSRYEMLAKK
SSDLGSPEAVQQAVEALISLLISVTTRVGSSSVDMEAILRQTFPELGDDV
IEVLEQFVTSKRNFVEGSIKSANIRAYRLVNLDWRLEVRTASRSLLDQCQ
VVVTMKLYLHTEPKNENRELLAVDISGRSEQELKAMQEDERLHRKDLLVQ
TDVCSLVHMIKTLEDALAESKTRRIRNIVDGIH*
BS06065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7168-PA | 233 | CG7168-PA | 1..233 | 1..233 | 1149 | 100 | Plus |