Clone BS06065 Report

Search the DGRC for BS06065

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG7168-RA
Protein status:BS06065.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06065.5prime Sequence

732 bp (731 high quality bases) assembled on 2005-12-03

> BS06065.5prime
GAAGTTATCAGTCGACATGTCATCTCTGCGCTTAACTCAACAACAGCGCA
ATCATTTGAGCCTGCTCCAAAAACCCGCCAGCGCTGTGGTGGAGCTGTGC
AAGTCCGCCTTTGATTACCTAATAAATGGACCCAATCCCAGCCGTTACGA
GATGCTAGCCAAAAAGTCCTCCGATTTGGGCAGTCCTGAGGCAGTGCAGC
AGGCGGTGGAGGCGCTGATATCCCTGCTCATCAGCGTGACCACCCGAGTG
GGGAGCAGTTCCGTCGACATGGAGGCCATACTGCGCCAGACATTCCCCGA
ACTCGGCGACGATGTGATAGAAGTTCTCGAGCAGTTCGTCACCAGCAAAC
GAAACTTTGTGGAGGGCTCAATCAAGTCGGCCAACATACGTGCCTATCGG
CTGGTCAACCTGGACTGGCGACTGGAGGTGCGCACCGCGTCGCGGAGCCT
GCTGGATCAGTGTCAGGTGGTGGTGACTATGAAGCTATATCTGCACACCG
AACCGAAGAATGAAAACCGAGAGCTGCTGGCGGTGGACATCTCCGGGCGC
AGCGAACAGGAGCTGAAGGCCATGCAGGAGGACGAGCGGCTGCATCGAAA
GGATTTGCTAGTGCAGACGGATGTCTGCAGTCTGGTGCACATGATCAAAA
CGCTGGAGGACGCGTTGGCCGAGTCCAAGACGCGGCGCATTCGCAATATT
GTCGACGGAATACACTGAAAGCTTTCTAGACC

BS06065.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-PA 702 CG7168-RA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-RA 1034 CG7168-RA 259..960 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18224976..18225677 718..17 3510 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:49:33 has no hits.

BS06065.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:07 Download gff for BS06065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:22 Download gff for BS06065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:00:46 Download gff for BS06065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..960 17..718 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:55 Download gff for BS06065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..960 17..718 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:55 Download gff for BS06065.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18224976..18225677 17..718 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:00:46 Download gff for BS06065.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14050698..14051399 17..718 100   Minus

BS06065.3prime Sequence

732 bp (731 high quality bases) assembled on 2005-12-03

> BS06065.3prime
ATGGTCTAGAAAGCTTTCAGTGTATTCCGTCGACAATATTGCGAATGCGC
CGCGTCTTGGACTCGGCCAACGCGTCCTCCAGCGTTTTGATCATGTGCAC
CAGACTGCAGACATCCGTCTGCACTAGCAAATCCTTTCGATGCAGCCGCT
CGTCCTCCTGCATGGCCTTCAGCTCCTGTTCGCTGCGCCCGGAGATGTCC
ACCGCCAGCAGCTCTCGGTTTTCATTCTTCGGTTCGGTGTGCAGATATAG
CTTCATAGTCACCACCACCTGACACTGATCCAGCAGGCTCCGCGACGCGG
TGCGCACCTCCAGTCGCCAGTCCAGGTTGACCAGCCGATAGGCACGTATG
TTGGCCGACTTGATTGAGCCCTCCACAAAGTTTCGTTTGCTGGTGACGAA
CTGCTCGAGAACTTCTATCACATCGTCGCCGAGTTCGGGGAATGTCTGGC
GCAGTATGGCCTCCATGTCGACGGAACTGCTCCCCACTCGGGTGGTCACG
CTGATGAGCAGGGATATCAGCGCCTCCACCGCCTGCTGCACTGCCTCAGG
ACTGCCCAAATCGGAGGACTTTTTGGCTAGCATCTCGTAACGGCTGGGAT
TGGGTCCATTTATTAGGTAATCAAAGGCGGACTTGCACAGCTCCACCACA
GCGCTGGCGGGTTTTTGGAGCAGGCTCAAATGATTGCGCTGTTGTTGAGT
TAAGCGCAGAGATGACATGTCGACTGATAACT

BS06065.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-PA 702 CG7168-RA 1..702 718..17 3510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-RA 1034 CG7168-RA 259..960 718..17 3510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18224976..18225677 17..718 3510 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:34:50 has no hits.

BS06065.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:05 Download gff for BS06065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-PA 1..702 17..718 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:20 Download gff for BS06065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-PA 1..702 17..718 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:52:02 Download gff for BS06065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..960 17..718 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:07 Download gff for BS06065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..960 17..718 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:07 Download gff for BS06065.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18224976..18225677 17..718 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:52:02 Download gff for BS06065.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14050698..14051399 17..718 100   Plus

BS06065.complete Sequence

734 bp (734 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635333

> BS06065.complete
GAAGTTATCAGTCGACATGTCATCTCTGCGCTTAACTCAACAACAGCGCA
ATCATTTGAGCCTGCTCCAAAAACCCGCCAGCGCTGTGGTGGAGCTGTGC
AAGTCCGCCTTTGATTACCTAATAAATGGACCCAATCCCAGCCGTTACGA
GATGCTAGCCAAAAAGTCCTCCGATTTGGGCAGTCCTGAGGCAGTGCAGC
AGGCGGTGGAGGCGCTGATATCCCTGCTCATCAGCGTGACCACCCGAGTG
GGGAGCAGTTCCGTCGACATGGAGGCCATACTGCGCCAGACATTCCCCGA
ACTCGGCGACGATGTGATAGAAGTTCTCGAGCAGTTCGTCACCAGCAAAC
GAAACTTTGTGGAGGGCTCAATCAAGTCGGCCAACATACGTGCCTATCGG
CTGGTCAACCTGGACTGGCGACTGGAGGTGCGCACCGCGTCGCGGAGCCT
GCTGGATCAGTGTCAGGTGGTGGTGACTATGAAGCTATATCTGCACACCG
AACCGAAGAATGAAAACCGAGAGCTGCTGGCGGTGGACATCTCCGGGCGC
AGCGAACAGGAGCTGAAGGCCATGCAGGAGGACGAGCGGCTGCATCGAAA
GGATTTGCTAGTGCAGACGGATGTCTGCAGTCTGGTGCACATGATCAAAA
CGCTGGAGGACGCGTTGGCCGAGTCCAAGACGCGGCGCATTCGCAATATT
GTCGACGGAATACACTGAAAGCTTTCTAGACCAT

BS06065.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-RA 702 CG7168-PA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-RA 1034 CG7168-RA 259..960 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18224976..18225677 718..17 3510 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:48:15 has no hits.

BS06065.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:05 Download gff for BS06065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:48 Download gff for BS06065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 204..905 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:57 Download gff for BS06065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..959 17..717 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:05 Download gff for BS06065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 204..905 17..718 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:05 Download gff for BS06065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..959 17..717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:05 Download gff for BS06065.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18224977..18225677 17..717 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:57 Download gff for BS06065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14050699..14051399 17..717 100   Minus

BS06065.pep Sequence

Translation from 16 to 717

> BS06065.pep
MSSLRLTQQQRNHLSLLQKPASAVVELCKSAFDYLINGPNPSRYEMLAKK
SSDLGSPEAVQQAVEALISLLISVTTRVGSSSVDMEAILRQTFPELGDDV
IEVLEQFVTSKRNFVEGSIKSANIRAYRLVNLDWRLEVRTASRSLLDQCQ
VVVTMKLYLHTEPKNENRELLAVDISGRSEQELKAMQEDERLHRKDLLVQ
TDVCSLVHMIKTLEDALAESKTRRIRNIVDGIH*

BS06065.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-PA 233 CG7168-PA 1..233 1..233 1149 100 Plus