Clone BS06066 Report

Search the DGRC for BS06066

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG8386-RA
Protein status:BS06066.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06066.3prime Sequence

525 bp (524 high quality bases) assembled on 2005-12-03

> BS06066.3prime
ATGGTCTAGAAAGCTTCTACTTTTCCTTGTACGTAATGATTCCCTTCTCG
ATGAGATCCGGAATCTCCACGGCCAGCCAGGGAGCAAGACCCAGAGCCAT
AGCGTGGGCGATCCCAAACTTGGGAACATTGCGTGCCCACAGTGGCTTAA
AGTGATCCGTCAGACAGATCTTGCCACCACGGTACATCTTCGCTGTCTTG
CCGTCAAGTTCTGGCAGGGCAATCTCGGGCGCGGTGGTTGGGTACGTCAC
TGGAATGTCGAACTCCACGTCGAACTCGTACTTTAACAGGTTGTGCATGT
ACCAACACTTTCCGAACCACTTGGTGCCCTCCTTGTTGGATTCCAGACGG
AACCAGTCGCTGCCGGACTGTTTGTTGTTCTCCACATACTTAATTAGTGC
CTGGTACTCCTCCTTGAGCCGCTGCACCCACACATCCTTTTCGCGCGGAC
CAGCGCGAATCTGCAGCAGCGGAATGTTGCTCAACGTTTTTCGAGTGCTG
TCGTCCACCATGTCGACTGATAACT

BS06066.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8386-PA 495 CG8386-RA 1..495 511..17 2475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8386-RA 656 CG8386-RA 97..595 515..17 2480 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16007087..16007388 89..390 1510 100 Plus
2R 25286936 2R 16007445..16007571 389..515 620 99.2 Plus
2R 25286936 2R 16006954..16007025 17..88 360 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:32:47 has no hits.

BS06066.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:08 Download gff for BS06066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8386-PA 1..495 17..511 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:24 Download gff for BS06066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8386-PA 1..495 17..511 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:15 Download gff for BS06066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8386-RA 88..597 12..523 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:21 Download gff for BS06066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8386-RA 88..597 12..523 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:21 Download gff for BS06066.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16006948..16007025 12..88 96 <- Plus
2R 16007087..16007386 89..388 100 <- Plus
2R 16007445..16007578 389..523 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:15 Download gff for BS06066.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11894950..11895083 389..523 96   Plus
arm_2R 11894453..11894530 12..88 96 <- Plus
arm_2R 11894592..11894891 89..388 100 <- Plus

BS06066.5prime Sequence

525 bp (524 high quality bases) assembled on 2005-12-03

> BS06066.5prime
GAAGTTATCAGTCGACATGGTGGACGACAGCACTCGAAAAACGTTGAGCA
ACATTCCGCTGCTGCAGATTCGCGCTGGTCCGCGCGAAAAGGATGTGTGG
GTGCAGCGGCTCAAGGAGGAGTACCAGGCACTAATTAAGTATGTGGAGAA
CAACAAACAGTCCGGCAGCGACTGGTTCCGTCTGGAATCCAACAAGGAGG
GCACCAAGTGGTTCGGAAAGTGTTGGTACATGCACAACCTGTTAAAGTAC
GAGTTCGACGTGGAGTTCGACATTCCAGTGACGTACCCAACCACCGCGCC
CGAGATTGCCCTGCCAGAACTTGACGGCAAGACAGCGAAGATGTACCGTG
GTGGCAAGATCTGTCTGACGGATCACTTTAAGCCACTGTGGGCACGCAAT
GTTCCCAAGTTTGGGATCGCCCACGCTATGGCTCTGGGTCTTGCTCCCTG
GCTGGCCGTGGAGATTCCGGATCTCATCGAGAAGGGAATCATTACGTACA
AGGAAAAGTAGAAGCTTTCTAGACC

BS06066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8386-PA 495 CG8386-RA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8386-RA 656 CG8386-RA 97..595 13..511 2480 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16007087..16007388 439..138 1510 100 Minus
2R 25286936 2R 16007445..16007571 139..13 620 99.2 Minus
2R 25286936 2R 16006954..16007025 511..440 360 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:02:04 has no hits.

BS06066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:09 Download gff for BS06066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8386-PA 1..495 17..511 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:25 Download gff for BS06066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8386-PA 1..495 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:57 Download gff for BS06066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8386-RA 88..597 5..516 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:29 Download gff for BS06066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8386-RA 88..597 5..516 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:29 Download gff for BS06066.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16006948..16007025 440..516 96 <- Minus
2R 16007087..16007386 140..439 100 <- Minus
2R 16007445..16007578 5..139 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:57 Download gff for BS06066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11894453..11894530 440..516 96 <- Minus
arm_2R 11894592..11894891 140..439 100 <- Minus
arm_2R 11894950..11895083 5..139 96   Minus

BS06066.complete Sequence

527 bp (527 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635334

> BS06066.complete
GAAGTTATCAGTCGACATGGTGGACGACAGCACTCGAAAAACGTTGAGCA
ACATTCCGCTGCTGCAGATTCGCGCTGGTCCGCGCGAAAAGGATGTGTGG
GTGCAGCGGCTCAAGGAGGAGTACCAGGCACTAATTAAGTATGTGGAGAA
CAACAAACAGTCCGGCAGCGACTGGTTCCGTCTGGAATCCAACAAGGAGG
GCACCAAGTGGTTCGGAAAGTGTTGGTACATGCACAACCTGTTAAAGTAC
GAGTTCGACGTGGAGTTCGACATTCCAGTGACGTACCCAACCACCGCGCC
CGAGATTGCCCTGCCAGAACTTGACGGCAAGACAGCGAAGATGTACCGTG
GTGGCAAGATCTGTCTGACGGATCACTTTAAGCCACTGTGGGCACGCAAT
GTTCCCAAGTTTGGGATCGCCCACGCTATGGCTCTGGGTCTTGCTCCCTG
GCTGGCCGTGGAGATTCCGGATCTCATCGAGAAGGGAATCATTACGTACA
AGGAAAAGTAGAAGCTTTCTAGACCAT

BS06066.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8386-RA 495 CG8386-PA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8386-RA 656 CG8386-RA 97..595 13..511 2480 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16007087..16007388 439..138 1510 100 Minus
2R 25286936 2R 16007445..16007571 139..13 620 99.2 Minus
2R 25286936 2R 16006954..16007025 511..440 360 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:50:21 has no hits.

BS06066.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:31 Download gff for BS06066.complete
Subject Subject Range Query Range Percent Splice Strand
CG8386-RA 1..495 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:14 Download gff for BS06066.complete
Subject Subject Range Query Range Percent Splice Strand
CG8386-RA 76..585 5..516 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:52 Download gff for BS06066.complete
Subject Subject Range Query Range Percent Splice Strand
CG8386-RA 101..595 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:31 Download gff for BS06066.complete
Subject Subject Range Query Range Percent Splice Strand
CG8386-RA 76..585 5..516 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:19 Download gff for BS06066.complete
Subject Subject Range Query Range Percent Splice Strand
CG8386-RA 101..595 17..511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:19 Download gff for BS06066.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16006954..16007025 440..511 100 <- Minus
2R 16007087..16007386 140..439 100 <- Minus
2R 16007445..16007567 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:52 Download gff for BS06066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11894459..11894530 440..511 100 <- Minus
arm_2R 11894592..11894891 140..439 100 <- Minus
arm_2R 11894950..11895072 17..139 100   Minus

BS06066.pep Sequence

Translation from 16 to 510

> BS06066.pep
MVDDSTRKTLSNIPLLQIRAGPREKDVWVQRLKEEYQALIKYVENNKQSG
SDWFRLESNKEGTKWFGKCWYMHNLLKYEFDVEFDIPVTYPTTAPEIALP
ELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAMALGLAPWLAVEI
PDLIEKGIITYKEK*

BS06066.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8386-PA 164 CG8386-PA 1..164 1..164 887 100 Plus