Clone Sequence Records
BS06066.3prime Sequence
525 bp (524 high quality bases) assembled on 2005-12-03
> BS06066.3prime
ATGGTCTAGAAAGCTTCTACTTTTCCTTGTACGTAATGATTCCCTTCTCG
ATGAGATCCGGAATCTCCACGGCCAGCCAGGGAGCAAGACCCAGAGCCAT
AGCGTGGGCGATCCCAAACTTGGGAACATTGCGTGCCCACAGTGGCTTAA
AGTGATCCGTCAGACAGATCTTGCCACCACGGTACATCTTCGCTGTCTTG
CCGTCAAGTTCTGGCAGGGCAATCTCGGGCGCGGTGGTTGGGTACGTCAC
TGGAATGTCGAACTCCACGTCGAACTCGTACTTTAACAGGTTGTGCATGT
ACCAACACTTTCCGAACCACTTGGTGCCCTCCTTGTTGGATTCCAGACGG
AACCAGTCGCTGCCGGACTGTTTGTTGTTCTCCACATACTTAATTAGTGC
CTGGTACTCCTCCTTGAGCCGCTGCACCCACACATCCTTTTCGCGCGGAC
CAGCGCGAATCTGCAGCAGCGGAATGTTGCTCAACGTTTTTCGAGTGCTG
TCGTCCACCATGTCGACTGATAACT
BS06066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-PA | 495 | CG8386-RA | 1..495 | 511..17 | 2475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-RA | 656 | CG8386-RA | 97..595 | 515..17 | 2480 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16007087..16007388 | 89..390 | 1510 | 100 | Plus |
2R | 25286936 | 2R | 16007445..16007571 | 389..515 | 620 | 99.2 | Plus |
2R | 25286936 | 2R | 16006954..16007025 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:32:47 has no hits.
BS06066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:08 Download gff for
BS06066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-PA | 1..495 | 17..511 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:24 Download gff for
BS06066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-PA | 1..495 | 17..511 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:15 Download gff for
BS06066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 88..597 | 12..523 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:21 Download gff for
BS06066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 88..597 | 12..523 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:21 Download gff for
BS06066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16006948..16007025 | 12..88 | 96 | <- | Plus |
2R | 16007087..16007386 | 89..388 | 100 | <- | Plus |
2R | 16007445..16007578 | 389..523 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:15 Download gff for
BS06066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11894950..11895083 | 389..523 | 96 | | Plus |
arm_2R | 11894453..11894530 | 12..88 | 96 | <- | Plus |
arm_2R | 11894592..11894891 | 89..388 | 100 | <- | Plus |
BS06066.5prime Sequence
525 bp (524 high quality bases) assembled on 2005-12-03
> BS06066.5prime
GAAGTTATCAGTCGACATGGTGGACGACAGCACTCGAAAAACGTTGAGCA
ACATTCCGCTGCTGCAGATTCGCGCTGGTCCGCGCGAAAAGGATGTGTGG
GTGCAGCGGCTCAAGGAGGAGTACCAGGCACTAATTAAGTATGTGGAGAA
CAACAAACAGTCCGGCAGCGACTGGTTCCGTCTGGAATCCAACAAGGAGG
GCACCAAGTGGTTCGGAAAGTGTTGGTACATGCACAACCTGTTAAAGTAC
GAGTTCGACGTGGAGTTCGACATTCCAGTGACGTACCCAACCACCGCGCC
CGAGATTGCCCTGCCAGAACTTGACGGCAAGACAGCGAAGATGTACCGTG
GTGGCAAGATCTGTCTGACGGATCACTTTAAGCCACTGTGGGCACGCAAT
GTTCCCAAGTTTGGGATCGCCCACGCTATGGCTCTGGGTCTTGCTCCCTG
GCTGGCCGTGGAGATTCCGGATCTCATCGAGAAGGGAATCATTACGTACA
AGGAAAAGTAGAAGCTTTCTAGACC
BS06066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-PA | 495 | CG8386-RA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-RA | 656 | CG8386-RA | 97..595 | 13..511 | 2480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16007087..16007388 | 439..138 | 1510 | 100 | Minus |
2R | 25286936 | 2R | 16007445..16007571 | 139..13 | 620 | 99.2 | Minus |
2R | 25286936 | 2R | 16006954..16007025 | 511..440 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:02:04 has no hits.
BS06066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:09 Download gff for
BS06066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-PA | 1..495 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:25 Download gff for
BS06066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-PA | 1..495 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:57 Download gff for
BS06066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 88..597 | 5..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:29 Download gff for
BS06066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 88..597 | 5..516 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:29 Download gff for
BS06066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16006948..16007025 | 440..516 | 96 | <- | Minus |
2R | 16007087..16007386 | 140..439 | 100 | <- | Minus |
2R | 16007445..16007578 | 5..139 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:57 Download gff for
BS06066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11894453..11894530 | 440..516 | 96 | <- | Minus |
arm_2R | 11894592..11894891 | 140..439 | 100 | <- | Minus |
arm_2R | 11894950..11895083 | 5..139 | 96 | | Minus |
BS06066.complete Sequence
527 bp (527 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635334
> BS06066.complete
GAAGTTATCAGTCGACATGGTGGACGACAGCACTCGAAAAACGTTGAGCA
ACATTCCGCTGCTGCAGATTCGCGCTGGTCCGCGCGAAAAGGATGTGTGG
GTGCAGCGGCTCAAGGAGGAGTACCAGGCACTAATTAAGTATGTGGAGAA
CAACAAACAGTCCGGCAGCGACTGGTTCCGTCTGGAATCCAACAAGGAGG
GCACCAAGTGGTTCGGAAAGTGTTGGTACATGCACAACCTGTTAAAGTAC
GAGTTCGACGTGGAGTTCGACATTCCAGTGACGTACCCAACCACCGCGCC
CGAGATTGCCCTGCCAGAACTTGACGGCAAGACAGCGAAGATGTACCGTG
GTGGCAAGATCTGTCTGACGGATCACTTTAAGCCACTGTGGGCACGCAAT
GTTCCCAAGTTTGGGATCGCCCACGCTATGGCTCTGGGTCTTGCTCCCTG
GCTGGCCGTGGAGATTCCGGATCTCATCGAGAAGGGAATCATTACGTACA
AGGAAAAGTAGAAGCTTTCTAGACCAT
BS06066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-RA | 495 | CG8386-PA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-RA | 656 | CG8386-RA | 97..595 | 13..511 | 2480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16007087..16007388 | 439..138 | 1510 | 100 | Minus |
2R | 25286936 | 2R | 16007445..16007571 | 139..13 | 620 | 99.2 | Minus |
2R | 25286936 | 2R | 16006954..16007025 | 511..440 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:50:21 has no hits.
BS06066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:31 Download gff for
BS06066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 1..495 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:14 Download gff for
BS06066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 76..585 | 5..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:52 Download gff for
BS06066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 101..595 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:31 Download gff for
BS06066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 76..585 | 5..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:19 Download gff for
BS06066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 101..595 | 17..511 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:19 Download gff for
BS06066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16006954..16007025 | 440..511 | 100 | <- | Minus |
2R | 16007087..16007386 | 140..439 | 100 | <- | Minus |
2R | 16007445..16007567 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:52 Download gff for
BS06066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11894459..11894530 | 440..511 | 100 | <- | Minus |
arm_2R | 11894592..11894891 | 140..439 | 100 | <- | Minus |
arm_2R | 11894950..11895072 | 17..139 | 100 | | Minus |
BS06066.pep Sequence
Translation from 16 to 510
> BS06066.pep
MVDDSTRKTLSNIPLLQIRAGPREKDVWVQRLKEEYQALIKYVENNKQSG
SDWFRLESNKEGTKWFGKCWYMHNLLKYEFDVEFDIPVTYPTTAPEIALP
ELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAMALGLAPWLAVEI
PDLIEKGIITYKEK*
BS06066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-PA | 164 | CG8386-PA | 1..164 | 1..164 | 887 | 100 | Plus |