Clone Sequence Records
BS06069.3prime Sequence
765 bp (764 high quality bases) assembled on 2005-12-03
> BS06069.3prime
ATGGTCTAGAAAGCTTTTATTCTATACCAATGCGTTTGCGGTCCTTGGCG
GCGTTCTTCTTGCGTCGCTTTTCCATGTGCTTGTTGAGTTTTCCAGTGTT
TTTCAGCTTCTCGAATTGGGCAACTAGTTCCTTAGCTCGACGCTCCTTCT
TTGTCAGATAATGAGGTTGTTGTCCCAAATCGTGTTTCTTCTGAATGGCG
GAGCGCTCCTTTTTCAGTTGCTTCTGTTTGGTGTGCCACTTCTTGTCCTC
CACATTTTTATTGATAAGTCGCTGCATGGTGTCCTTTATATGGTGCTTCT
CCGCCTCATCCTCCACTTCGTCCAGTTTTTTCTTCAGCTGACCAACTTCC
TTTGCTCGAATCTGGGAGACAAACTGGTAGTTCTTCTTGAAGGTTTCTGC
ACTATATGTTCCGGATTTTTCGTCAAATCTTGGATCTCTGAGTTCAACAT
TTTTTTTCCGCTCCACTCTGTGCTCGGCGCCCAAAAATGGAACCTGTCGT
CTGGTGGTCATTTCACGAGGTCGGTTTTTGTTTAGCCGCTTGAGGTCGGT
TTTGGCCTTTGGTTTTTGGGGTCTAGAACTCTTGCTACCGAGCACAGCCT
CTTTGTACACCTTGGCGCCCAGCTCCTCTTTTAGTTTCATTATCTCCTCG
AATGACATTCCTTTGAGATCTTCGCGAATGGCATTCTGAGTTTCGTTGTC
ATCGCTAGCCTCGTGCTCAGAAGCTGAAGAGGATTCACTGGGAGAGGACA
TGTCGACTGATAACT
BS06069.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-PA | 735 | CG8461-RA | 1..735 | 751..17 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-RA | 883 | CG8461-RA | 91..825 | 751..17 | 3675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512883..14513422 | 148..687 | 2700 | 100 | Plus |
3R | 32079331 | 3R | 14512697..14512827 | 17..147 | 655 | 100 | Plus |
3R | 32079331 | 3R | 14513482..14513547 | 686..751 | 330 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 3194..3247 | 654..601 | 108 | 66.7 | Minus |
BS06069.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:15 Download gff for
BS06069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-PA | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:32 Download gff for
BS06069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-PA | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:45:40 Download gff for
BS06069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..830 | 11..751 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:42 Download gff for
BS06069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..830 | 11..751 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:42 Download gff for
BS06069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14512692..14512827 | 11..147 | 98 | <- | Plus |
3R | 14512883..14513420 | 148..685 | 100 | <- | Plus |
3R | 14513482..14513547 | 686..751 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:45:40 Download gff for
BS06069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10338414..10338549 | 11..147 | 98 | <- | Plus |
arm_3R | 10338605..10339142 | 148..685 | 100 | <- | Plus |
arm_3R | 10339204..10339269 | 686..751 | 100 | | Plus |
BS06069.5prime Sequence
765 bp (764 high quality bases) assembled on 2005-12-03
> BS06069.5prime
GAAGTTATCAGTCGACATGTCCTCTCCCAGTGAATCCTCTTCAGCTTCTG
AGCACGAGGCTAGCGATGACAACGAAACTCAGAATGCCATTCGCGAAGAT
CTCAAAGGAATGTCATTCGAGGAGATAATGAAACTAAAAGAGGAGCTGGG
CGCCAAGGTGTACAAAGAGGCTGTGCTCGGTAGCAAGAGTTCTAGACCCC
AAAAACCAAAGGCCAAAACCGACCTCAAGCGGCTAAACAAAAACCGACCT
CGTGAAATGACCACCAGACGACAGGTTCCATTTTTGGGCGCCGAGCACAG
AGTGGAGCGGAAAAAAAATGTTGAACTCAGAGATCCAAGATTTGACGAAA
AATCCGGAACATATAGTGCAGAAACCTTCAAGAAGAACTACCAGTTTGTC
TCCCAGATTCGAGCAAAGGAAGTTGGTCAGCTGAAGAAAAAACTGGACGA
AGTGGAGGATGAGGCGGAGAAGCACCATATAAAGGACACCATGCAGCGAC
TTATCAATAAAAATGTGGAGGACAAGAAGTGGCACACCAAACAGAAGCAA
CTGAAAAAGGAGCGCTCCGCCATTCAGAAGAAACACGATTTGGGACAACA
ACCTCATTATCTGACAAAGAAGGAGCGTCGAGCTAAGGAACTAGTTGCCC
AATTCGAGAAGCTGAAAAACACTGGAAAACTCAACAAGCACATGGAAAAG
CGACGCAAGAAGAACGCCGCCAAGGACCGCAAACGCATTGGTATAGAATA
AAAGCTTTCTAGACC
BS06069.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-PA | 735 | CG8461-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-RA | 883 | CG8461-RA | 91..825 | 17..751 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512883..14513422 | 620..81 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 14512697..14512827 | 751..621 | 655 | 100 | Minus |
3R | 32079331 | 3R | 14513482..14513547 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 14:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 3194..3247 | 114..167 | 108 | 66.7 | Plus |
BS06069.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:16 Download gff for
BS06069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:34 Download gff for
BS06069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:59:58 Download gff for
BS06069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..830 | 17..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:14 Download gff for
BS06069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..830 | 17..757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:14 Download gff for
BS06069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14512692..14512827 | 621..757 | 98 | <- | Minus |
3R | 14512883..14513420 | 83..620 | 100 | <- | Minus |
3R | 14513482..14513547 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:59:58 Download gff for
BS06069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10338414..10338549 | 621..757 | 98 | <- | Minus |
arm_3R | 10338605..10339142 | 83..620 | 100 | <- | Minus |
arm_3R | 10339204..10339269 | 17..82 | 100 | | Minus |
BS06069.complete Sequence
767 bp (767 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635335
> BS06069.complete
GAAGTTATCAGTCGACATGTCCTCTCCCAGTGAATCCTCTTCAGCTTCTG
AGCACGAGGCTAGCGATGACAACGAAACTCAGAATGCCATTCGCGAAGAT
CTCAAAGGAATGTCATTCGAGGAGATAATGAAACTAAAAGAGGAGCTGGG
CGCCAAGGTGTACAAAGAGGCTGTGCTCGGTAGCAAGAGTTCTAGACCCC
AAAAACCAAAGGCCAAAACCGACCTCAAGCGGCTAAACAAAAACCGACCT
CGTGAAATGACCACCAGACGACAGGTTCCATTTTTGGGCGCCGAGCACAG
AGTGGAGCGGAAAAAAAATGTTGAACTCAGAGATCCAAGATTTGACGAAA
AATCCGGAACATATAGTGCAGAAACCTTCAAGAAGAACTACCAGTTTGTC
TCCCAGATTCGAGCAAAGGAAGTTGGTCAGCTGAAGAAAAAACTGGACGA
AGTGGAGGATGAGGCGGAGAAGCACCATATAAAGGACACCATGCAGCGAC
TTATCAATAAAAATGTGGAGGACAAGAAGTGGCACACCAAACAGAAGCAA
CTGAAAAAGGAGCGCTCCGCCATTCAGAAGAAACACGATTTGGGACAACA
ACCTCATTATCTGACAAAGAAGGAGCGTCGAGCTAAGGAACTAGTTGCCC
AATTCGAGAAGCTGAAAAACACTGGAAAACTCAACAAGCACATGGAAAAG
CGACGCAAGAAGAACGCCGCCAAGGACCGCAAACGCATTGGTATAGAATA
AAAGCTTTCTAGACCAT
BS06069.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-RA | 735 | CG8461-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-RA | 883 | CG8461-RA | 91..825 | 17..751 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512883..14513422 | 620..81 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 14512697..14512827 | 751..621 | 655 | 100 | Minus |
3R | 32079331 | 3R | 14513482..14513547 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 3194..3247 | 114..167 | 108 | 66.7 | Plus |
BS06069.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:54 Download gff for
BS06069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:46 Download gff for
BS06069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 59..798 | 17..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:34 Download gff for
BS06069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..823 | 17..749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:54 Download gff for
BS06069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 60..799 | 17..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:26 Download gff for
BS06069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..823 | 17..749 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:26 Download gff for
BS06069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14512699..14512827 | 621..749 | 100 | <- | Minus |
3R | 14512883..14513420 | 83..620 | 100 | <- | Minus |
3R | 14513482..14513547 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:34 Download gff for
BS06069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10338421..10338549 | 621..749 | 100 | <- | Minus |
arm_3R | 10338605..10339142 | 83..620 | 100 | <- | Minus |
arm_3R | 10339204..10339269 | 17..82 | 100 | | Minus |
BS06069.pep Sequence
Translation from 16 to 750
> BS06069.pep
MSSPSESSSASEHEASDDNETQNAIREDLKGMSFEEIMKLKEELGAKVYK
EAVLGSKSSRPQKPKAKTDLKRLNKNRPREMTTRRQVPFLGAEHRVERKK
NVELRDPRFDEKSGTYSAETFKKNYQFVSQIRAKEVGQLKKKLDEVEDEA
EKHHIKDTMQRLINKNVEDKKWHTKQKQLKKERSAIQKKHDLGQQPHYLT
KKERRAKELVAQFEKLKNTGKLNKHMEKRRKKNAAKDRKRIGIE*
BS06069.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-PA | 244 | CG8461-PA | 1..244 | 1..244 | 1244 | 100 | Plus |