Clone BS06069 Report

Search the DGRC for BS06069

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG8461-RA
Protein status:BS06069.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06069.3prime Sequence

765 bp (764 high quality bases) assembled on 2005-12-03

> BS06069.3prime
ATGGTCTAGAAAGCTTTTATTCTATACCAATGCGTTTGCGGTCCTTGGCG
GCGTTCTTCTTGCGTCGCTTTTCCATGTGCTTGTTGAGTTTTCCAGTGTT
TTTCAGCTTCTCGAATTGGGCAACTAGTTCCTTAGCTCGACGCTCCTTCT
TTGTCAGATAATGAGGTTGTTGTCCCAAATCGTGTTTCTTCTGAATGGCG
GAGCGCTCCTTTTTCAGTTGCTTCTGTTTGGTGTGCCACTTCTTGTCCTC
CACATTTTTATTGATAAGTCGCTGCATGGTGTCCTTTATATGGTGCTTCT
CCGCCTCATCCTCCACTTCGTCCAGTTTTTTCTTCAGCTGACCAACTTCC
TTTGCTCGAATCTGGGAGACAAACTGGTAGTTCTTCTTGAAGGTTTCTGC
ACTATATGTTCCGGATTTTTCGTCAAATCTTGGATCTCTGAGTTCAACAT
TTTTTTTCCGCTCCACTCTGTGCTCGGCGCCCAAAAATGGAACCTGTCGT
CTGGTGGTCATTTCACGAGGTCGGTTTTTGTTTAGCCGCTTGAGGTCGGT
TTTGGCCTTTGGTTTTTGGGGTCTAGAACTCTTGCTACCGAGCACAGCCT
CTTTGTACACCTTGGCGCCCAGCTCCTCTTTTAGTTTCATTATCTCCTCG
AATGACATTCCTTTGAGATCTTCGCGAATGGCATTCTGAGTTTCGTTGTC
ATCGCTAGCCTCGTGCTCAGAAGCTGAAGAGGATTCACTGGGAGAGGACA
TGTCGACTGATAACT

BS06069.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-PA 735 CG8461-RA 1..735 751..17 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-RA 883 CG8461-RA 91..825 751..17 3675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512883..14513422 148..687 2700 100 Plus
3R 32079331 3R 14512697..14512827 17..147 655 100 Plus
3R 32079331 3R 14513482..14513547 686..751 330 100 Plus
Blast to na_te.dros performed 2015-02-10 22:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 3194..3247 654..601 108 66.7 Minus

BS06069.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:15 Download gff for BS06069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-PA 1..735 17..751 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:32 Download gff for BS06069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-PA 1..735 17..751 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:45:40 Download gff for BS06069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..830 11..751 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:42 Download gff for BS06069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..830 11..751 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:42 Download gff for BS06069.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14512692..14512827 11..147 98 <- Plus
3R 14512883..14513420 148..685 100 <- Plus
3R 14513482..14513547 686..751 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:45:40 Download gff for BS06069.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10338414..10338549 11..147 98 <- Plus
arm_3R 10338605..10339142 148..685 100 <- Plus
arm_3R 10339204..10339269 686..751 100   Plus

BS06069.5prime Sequence

765 bp (764 high quality bases) assembled on 2005-12-03

> BS06069.5prime
GAAGTTATCAGTCGACATGTCCTCTCCCAGTGAATCCTCTTCAGCTTCTG
AGCACGAGGCTAGCGATGACAACGAAACTCAGAATGCCATTCGCGAAGAT
CTCAAAGGAATGTCATTCGAGGAGATAATGAAACTAAAAGAGGAGCTGGG
CGCCAAGGTGTACAAAGAGGCTGTGCTCGGTAGCAAGAGTTCTAGACCCC
AAAAACCAAAGGCCAAAACCGACCTCAAGCGGCTAAACAAAAACCGACCT
CGTGAAATGACCACCAGACGACAGGTTCCATTTTTGGGCGCCGAGCACAG
AGTGGAGCGGAAAAAAAATGTTGAACTCAGAGATCCAAGATTTGACGAAA
AATCCGGAACATATAGTGCAGAAACCTTCAAGAAGAACTACCAGTTTGTC
TCCCAGATTCGAGCAAAGGAAGTTGGTCAGCTGAAGAAAAAACTGGACGA
AGTGGAGGATGAGGCGGAGAAGCACCATATAAAGGACACCATGCAGCGAC
TTATCAATAAAAATGTGGAGGACAAGAAGTGGCACACCAAACAGAAGCAA
CTGAAAAAGGAGCGCTCCGCCATTCAGAAGAAACACGATTTGGGACAACA
ACCTCATTATCTGACAAAGAAGGAGCGTCGAGCTAAGGAACTAGTTGCCC
AATTCGAGAAGCTGAAAAACACTGGAAAACTCAACAAGCACATGGAAAAG
CGACGCAAGAAGAACGCCGCCAAGGACCGCAAACGCATTGGTATAGAATA
AAAGCTTTCTAGACC

BS06069.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-PA 735 CG8461-RA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-RA 883 CG8461-RA 91..825 17..751 3675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512883..14513422 620..81 2700 100 Minus
3R 32079331 3R 14512697..14512827 751..621 655 100 Minus
3R 32079331 3R 14513482..14513547 82..17 330 100 Minus
Blast to na_te.dros performed 2015-02-11 14:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 3194..3247 114..167 108 66.7 Plus

BS06069.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:16 Download gff for BS06069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:34 Download gff for BS06069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:59:58 Download gff for BS06069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..830 17..757 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:14 Download gff for BS06069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..830 17..757 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:14 Download gff for BS06069.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14512692..14512827 621..757 98 <- Minus
3R 14512883..14513420 83..620 100 <- Minus
3R 14513482..14513547 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:59:58 Download gff for BS06069.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10338414..10338549 621..757 98 <- Minus
arm_3R 10338605..10339142 83..620 100 <- Minus
arm_3R 10339204..10339269 17..82 100   Minus

BS06069.complete Sequence

767 bp (767 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635335

> BS06069.complete
GAAGTTATCAGTCGACATGTCCTCTCCCAGTGAATCCTCTTCAGCTTCTG
AGCACGAGGCTAGCGATGACAACGAAACTCAGAATGCCATTCGCGAAGAT
CTCAAAGGAATGTCATTCGAGGAGATAATGAAACTAAAAGAGGAGCTGGG
CGCCAAGGTGTACAAAGAGGCTGTGCTCGGTAGCAAGAGTTCTAGACCCC
AAAAACCAAAGGCCAAAACCGACCTCAAGCGGCTAAACAAAAACCGACCT
CGTGAAATGACCACCAGACGACAGGTTCCATTTTTGGGCGCCGAGCACAG
AGTGGAGCGGAAAAAAAATGTTGAACTCAGAGATCCAAGATTTGACGAAA
AATCCGGAACATATAGTGCAGAAACCTTCAAGAAGAACTACCAGTTTGTC
TCCCAGATTCGAGCAAAGGAAGTTGGTCAGCTGAAGAAAAAACTGGACGA
AGTGGAGGATGAGGCGGAGAAGCACCATATAAAGGACACCATGCAGCGAC
TTATCAATAAAAATGTGGAGGACAAGAAGTGGCACACCAAACAGAAGCAA
CTGAAAAAGGAGCGCTCCGCCATTCAGAAGAAACACGATTTGGGACAACA
ACCTCATTATCTGACAAAGAAGGAGCGTCGAGCTAAGGAACTAGTTGCCC
AATTCGAGAAGCTGAAAAACACTGGAAAACTCAACAAGCACATGGAAAAG
CGACGCAAGAAGAACGCCGCCAAGGACCGCAAACGCATTGGTATAGAATA
AAAGCTTTCTAGACCAT

BS06069.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-RA 735 CG8461-PA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-RA 883 CG8461-RA 91..825 17..751 3675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512883..14513422 620..81 2700 100 Minus
3R 32079331 3R 14512697..14512827 751..621 655 100 Minus
3R 32079331 3R 14513482..14513547 82..17 330 100 Minus
Blast to na_te.dros performed 2014-11-26 16:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 3194..3247 114..167 108 66.7 Plus

BS06069.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:54 Download gff for BS06069.complete
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:46 Download gff for BS06069.complete
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 59..798 17..757 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:34 Download gff for BS06069.complete
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..823 17..749 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:54 Download gff for BS06069.complete
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 60..799 17..757 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:26 Download gff for BS06069.complete
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..823 17..749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:26 Download gff for BS06069.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14512699..14512827 621..749 100 <- Minus
3R 14512883..14513420 83..620 100 <- Minus
3R 14513482..14513547 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:34 Download gff for BS06069.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10338421..10338549 621..749 100 <- Minus
arm_3R 10338605..10339142 83..620 100 <- Minus
arm_3R 10339204..10339269 17..82 100   Minus

BS06069.pep Sequence

Translation from 16 to 750

> BS06069.pep
MSSPSESSSASEHEASDDNETQNAIREDLKGMSFEEIMKLKEELGAKVYK
EAVLGSKSSRPQKPKAKTDLKRLNKNRPREMTTRRQVPFLGAEHRVERKK
NVELRDPRFDEKSGTYSAETFKKNYQFVSQIRAKEVGQLKKKLDEVEDEA
EKHHIKDTMQRLINKNVEDKKWHTKQKQLKKERSAIQKKHDLGQQPHYLT
KKERRAKELVAQFEKLKNTGKLNKHMEKRRKKNAAKDRKRIGIE*

BS06069.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-PA 244 CG8461-PA 1..244 1..244 1244 100 Plus