Clone Sequence Records
BS06070.3prime Sequence
576 bp (575 high quality bases) assembled on 2005-12-03
> BS06070.3prime
ATGGTCTAGAAAGCTTTCACTTGAGCAGACAGCACTCGAAGTAGGTCTCG
CCCACACAGCCACCACGCATCGCCTTCTTTACATTGTTCTCGAACTGACG
GCGGTTGGTCTGCAGGACGTCGGCCGCCTCCTTGTTGAGCGGATCCTCGG
GATTGGGTTCCAAGAATAGAAACTGCAAGCCATAGACGATGGAGTTGATG
TTCAGCACTGGATTCCAGTCCTCGCGCAGAATGTTGAGGCAGACGTTGCC
ATCCAGGTCAATATTGGGATGGTACACCTGGGTGGCGCACTTCACCTTGG
GCGGCTCGTGCGGATAGTTGGATCCGACGCGGAAATTGAACACGAAGCGC
CCGTCTCTGTAGAAGCCCTCGTCGGGCGAGATGATAAGCTTGAAGTTGAG
CAAGTCATTGGGATCGGGAAAGTCTGTGGCGCAAGTGTTTGGCAGGTTCA
GTTCGTTAATATCTTTCTGTATGCGCAGCTGGGCGGCGGACGCTTTCTTC
TGCTGACTGCCCTTTTGCTCGCCGTCTTTCTTCTGCTGCTTAAGCGTGAA
TAGTTTAATCATGTCGACTGATAACT
BS06070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7375-PA | 546 | CG7375-RA | 1..546 | 562..17 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2M-RC | 1729 | CG7375-RC | 291..836 | 562..17 | 2730 | 100 | Minus |
UbcE2M-RB | 916 | CG7375-RB | 164..709 | 562..17 | 2730 | 100 | Minus |
UbcE2M-RA | 913 | CG7375-RA | 161..706 | 562..17 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8197141..8197445 | 160..464 | 1525 | 100 | Plus |
3L | 28110227 | 3L | 8196740..8196884 | 17..161 | 725 | 100 | Plus |
3L | 28110227 | 3L | 8197522..8197621 | 463..562 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:35:05 has no hits.
BS06070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:17 Download gff for
BS06070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-PA | 1..546 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:35 Download gff for
BS06070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-PA | 1..546 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:52:04 Download gff for
BS06070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc12-RA | 161..706 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:08 Download gff for
BS06070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2M-RA | 161..706 | 17..562 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:08 Download gff for
BS06070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8196740..8196883 | 17..160 | 100 | <- | Plus |
3L | 8197142..8197443 | 161..462 | 100 | <- | Plus |
3L | 8197522..8197621 | 463..562 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:52:04 Download gff for
BS06070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8190622..8190721 | 463..562 | 100 | | Plus |
arm_3L | 8189840..8189983 | 17..160 | 100 | <- | Plus |
arm_3L | 8190242..8190543 | 161..462 | 100 | <- | Plus |
BS06070.5prime Sequence
576 bp (575 high quality bases) assembled on 2005-12-03
> BS06070.5prime
GAAGTTATCAGTCGACATGATTAAACTATTCACGCTTAAGCAGCAGAAGA
AAGACGGCGAGCAAAAGGGCAGTCAGCAGAAGAAAGCGTCCGCCGCCCAG
CTGCGCATACAGAAAGATATTAACGAACTGAACCTGCCAAACACTTGCGC
CACAGACTTTCCCGATCCCAATGACTTGCTCAACTTCAAGCTTATCATCT
CGCCCGACGAGGGCTTCTACAGAGACGGGCGCTTCGTGTTCAATTTCCGC
GTCGGATCCAACTATCCGCACGAGCCGCCCAAGGTGAAGTGCGCCACCCA
GGTGTACCATCCCAATATTGACCTGGATGGCAACGTCTGCCTCAACATTC
TGCGCGAGGACTGGAATCCAGTGCTGAACATCAACTCCATCGTCTATGGC
TTGCAGTTTCTATTCTTGGAACCCAATCCCGAGGATCCGCTCAACAAGGA
GGCGGCCGACGTCCTGCAGACCAACCGCCGTCAGTTCGAGAACAATGTAA
AGAAGGCGATGCGTGGTGGCTGTGTGGGCGAGACCTACTTCGAGTGCTGT
CTGCTCAAGTGAAAGCTTTCTAGACC
BS06070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7375-PA | 546 | CG7375-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:16:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2M-RC | 1729 | CG7375-RC | 291..836 | 17..562 | 2730 | 100 | Plus |
UbcE2M-RB | 916 | CG7375-RB | 164..709 | 17..562 | 2730 | 100 | Plus |
UbcE2M-RA | 913 | CG7375-RA | 161..706 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8197141..8197445 | 419..115 | 1525 | 100 | Minus |
3L | 28110227 | 3L | 8196740..8196884 | 562..418 | 725 | 100 | Minus |
3L | 28110227 | 3L | 8197522..8197621 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:16:45 has no hits.
BS06070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:18 Download gff for
BS06070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:37 Download gff for
BS06070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:58 Download gff for
BS06070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc12-RA | 161..706 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:53:29 Download gff for
BS06070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2M-RA | 161..706 | 17..562 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:53:29 Download gff for
BS06070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8196740..8196883 | 419..562 | 100 | <- | Minus |
3L | 8197142..8197443 | 117..418 | 100 | <- | Minus |
3L | 8197522..8197621 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:58 Download gff for
BS06070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8189840..8189983 | 419..562 | 100 | <- | Minus |
arm_3L | 8190242..8190543 | 117..418 | 100 | <- | Minus |
arm_3L | 8190622..8190721 | 17..116 | 100 | | Minus |
BS06070.complete Sequence
578 bp (578 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635336
> BS06070.complete
GAAGTTATCAGTCGACATGATTAAACTATTCACGCTTAAGCAGCAGAAGA
AAGACGGCGAGCAAAAGGGCAGTCAGCAGAAGAAAGCGTCCGCCGCCCAG
CTGCGCATACAGAAAGATATTAACGAACTGAACCTGCCAAACACTTGCGC
CACAGACTTTCCCGATCCCAATGACTTGCTCAACTTCAAGCTTATCATCT
CGCCCGACGAGGGCTTCTACAGAGACGGGCGCTTCGTGTTCAATTTCCGC
GTCGGATCCAACTATCCGCACGAGCCGCCCAAGGTGAAGTGCGCCACCCA
GGTGTACCATCCCAATATTGACCTGGATGGCAACGTCTGCCTCAACATTC
TGCGCGAGGACTGGAATCCAGTGCTGAACATCAACTCCATCGTCTATGGC
TTGCAGTTTCTATTCTTGGAACCCAATCCCGAGGATCCGCTCAACAAGGA
GGCGGCCGACGTCCTGCAGACCAACCGCCGTCAGTTCGAGAACAATGTAA
AGAAGGCGATGCGTGGTGGCTGTGTGGGCGAGACCTACTTCGAGTGCTGT
CTGCTCAAGTGAAAGCTTTCTAGACCAT
BS06070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2M-RC | 546 | CG7375-PC | 1..546 | 17..562 | 2730 | 100 | Plus |
UbcE2M-RB | 546 | CG7375-PB | 1..546 | 17..562 | 2730 | 100 | Plus |
UbcE2M-RA | 546 | CG7375-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2M-RC | 1729 | CG7375-RC | 291..836 | 17..562 | 2730 | 100 | Plus |
UbcE2M-RB | 916 | CG7375-RB | 164..709 | 17..562 | 2730 | 100 | Plus |
UbcE2M-RA | 913 | CG7375-RA | 161..706 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8197141..8197445 | 419..115 | 1525 | 100 | Minus |
3L | 28110227 | 3L | 8196740..8196884 | 562..418 | 725 | 100 | Minus |
3L | 28110227 | 3L | 8197522..8197621 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:50:08 has no hits.
BS06070.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:33 Download gff for
BS06070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-RA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:54 Download gff for
BS06070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-RA | 160..705 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:51 Download gff for
BS06070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc12-RA | 161..705 | 17..561 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:34 Download gff for
BS06070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-RA | 160..705 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:16 Download gff for
BS06070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2M-RA | 161..705 | 17..561 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:16 Download gff for
BS06070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8196741..8196883 | 419..561 | 100 | <- | Minus |
3L | 8197142..8197443 | 117..418 | 100 | <- | Minus |
3L | 8197522..8197621 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:51 Download gff for
BS06070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8189841..8189983 | 419..561 | 100 | <- | Minus |
arm_3L | 8190242..8190543 | 117..418 | 100 | <- | Minus |
arm_3L | 8190622..8190721 | 17..116 | 100 | | Minus |
BS06070.pep Sequence
Translation from 16 to 561
> BS06070.pep
MIKLFTLKQQKKDGEQKGSQQKKASAAQLRIQKDINELNLPNTCATDFPD
PNDLLNFKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPN
IDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVL
QTNRRQFENNVKKAMRGGCVGETYFECCLLK*
BS06070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2M-PC | 181 | CG7375-PC | 1..181 | 1..181 | 975 | 100 | Plus |
UbcE2M-PB | 181 | CG7375-PB | 1..181 | 1..181 | 975 | 100 | Plus |
UbcE2M-PA | 181 | CG7375-PA | 1..181 | 1..181 | 975 | 100 | Plus |
Ubc6-PC | 151 | CG2013-PC | 2..151 | 24..176 | 249 | 31 | Plus |
Ubc6-PA | 151 | CG2013-PA | 2..151 | 24..176 | 249 | 31 | Plus |