Clone BS06070 Report

Search the DGRC for BS06070

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptUbcE2M-RA
Protein status:BS06070.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06070.3prime Sequence

576 bp (575 high quality bases) assembled on 2005-12-03

> BS06070.3prime
ATGGTCTAGAAAGCTTTCACTTGAGCAGACAGCACTCGAAGTAGGTCTCG
CCCACACAGCCACCACGCATCGCCTTCTTTACATTGTTCTCGAACTGACG
GCGGTTGGTCTGCAGGACGTCGGCCGCCTCCTTGTTGAGCGGATCCTCGG
GATTGGGTTCCAAGAATAGAAACTGCAAGCCATAGACGATGGAGTTGATG
TTCAGCACTGGATTCCAGTCCTCGCGCAGAATGTTGAGGCAGACGTTGCC
ATCCAGGTCAATATTGGGATGGTACACCTGGGTGGCGCACTTCACCTTGG
GCGGCTCGTGCGGATAGTTGGATCCGACGCGGAAATTGAACACGAAGCGC
CCGTCTCTGTAGAAGCCCTCGTCGGGCGAGATGATAAGCTTGAAGTTGAG
CAAGTCATTGGGATCGGGAAAGTCTGTGGCGCAAGTGTTTGGCAGGTTCA
GTTCGTTAATATCTTTCTGTATGCGCAGCTGGGCGGCGGACGCTTTCTTC
TGCTGACTGCCCTTTTGCTCGCCGTCTTTCTTCTGCTGCTTAAGCGTGAA
TAGTTTAATCATGTCGACTGATAACT

BS06070.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7375-PA 546 CG7375-RA 1..546 562..17 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2M-RC 1729 CG7375-RC 291..836 562..17 2730 100 Minus
UbcE2M-RB 916 CG7375-RB 164..709 562..17 2730 100 Minus
UbcE2M-RA 913 CG7375-RA 161..706 562..17 2730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8197141..8197445 160..464 1525 100 Plus
3L 28110227 3L 8196740..8196884 17..161 725 100 Plus
3L 28110227 3L 8197522..8197621 463..562 500 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:35:05 has no hits.

BS06070.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:17 Download gff for BS06070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7375-PA 1..546 17..562 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:35 Download gff for BS06070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7375-PA 1..546 17..562 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:52:04 Download gff for BS06070.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc12-RA 161..706 17..562 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:08 Download gff for BS06070.3prime
Subject Subject Range Query Range Percent Splice Strand
UbcE2M-RA 161..706 17..562 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:08 Download gff for BS06070.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8196740..8196883 17..160 100 <- Plus
3L 8197142..8197443 161..462 100 <- Plus
3L 8197522..8197621 463..562 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:52:04 Download gff for BS06070.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8190622..8190721 463..562 100   Plus
arm_3L 8189840..8189983 17..160 100 <- Plus
arm_3L 8190242..8190543 161..462 100 <- Plus

BS06070.5prime Sequence

576 bp (575 high quality bases) assembled on 2005-12-03

> BS06070.5prime
GAAGTTATCAGTCGACATGATTAAACTATTCACGCTTAAGCAGCAGAAGA
AAGACGGCGAGCAAAAGGGCAGTCAGCAGAAGAAAGCGTCCGCCGCCCAG
CTGCGCATACAGAAAGATATTAACGAACTGAACCTGCCAAACACTTGCGC
CACAGACTTTCCCGATCCCAATGACTTGCTCAACTTCAAGCTTATCATCT
CGCCCGACGAGGGCTTCTACAGAGACGGGCGCTTCGTGTTCAATTTCCGC
GTCGGATCCAACTATCCGCACGAGCCGCCCAAGGTGAAGTGCGCCACCCA
GGTGTACCATCCCAATATTGACCTGGATGGCAACGTCTGCCTCAACATTC
TGCGCGAGGACTGGAATCCAGTGCTGAACATCAACTCCATCGTCTATGGC
TTGCAGTTTCTATTCTTGGAACCCAATCCCGAGGATCCGCTCAACAAGGA
GGCGGCCGACGTCCTGCAGACCAACCGCCGTCAGTTCGAGAACAATGTAA
AGAAGGCGATGCGTGGTGGCTGTGTGGGCGAGACCTACTTCGAGTGCTGT
CTGCTCAAGTGAAAGCTTTCTAGACC

BS06070.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7375-PA 546 CG7375-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2M-RC 1729 CG7375-RC 291..836 17..562 2730 100 Plus
UbcE2M-RB 916 CG7375-RB 164..709 17..562 2730 100 Plus
UbcE2M-RA 913 CG7375-RA 161..706 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8197141..8197445 419..115 1525 100 Minus
3L 28110227 3L 8196740..8196884 562..418 725 100 Minus
3L 28110227 3L 8197522..8197621 116..17 500 100 Minus
Blast to na_te.dros performed on 2015-02-09 23:16:45 has no hits.

BS06070.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:18 Download gff for BS06070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7375-PA 1..546 17..562 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:37 Download gff for BS06070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7375-PA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:58 Download gff for BS06070.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc12-RA 161..706 17..562 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:53:29 Download gff for BS06070.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcE2M-RA 161..706 17..562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:53:29 Download gff for BS06070.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8196740..8196883 419..562 100 <- Minus
3L 8197142..8197443 117..418 100 <- Minus
3L 8197522..8197621 17..116 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:58 Download gff for BS06070.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8189840..8189983 419..562 100 <- Minus
arm_3L 8190242..8190543 117..418 100 <- Minus
arm_3L 8190622..8190721 17..116 100   Minus

BS06070.complete Sequence

578 bp (578 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635336

> BS06070.complete
GAAGTTATCAGTCGACATGATTAAACTATTCACGCTTAAGCAGCAGAAGA
AAGACGGCGAGCAAAAGGGCAGTCAGCAGAAGAAAGCGTCCGCCGCCCAG
CTGCGCATACAGAAAGATATTAACGAACTGAACCTGCCAAACACTTGCGC
CACAGACTTTCCCGATCCCAATGACTTGCTCAACTTCAAGCTTATCATCT
CGCCCGACGAGGGCTTCTACAGAGACGGGCGCTTCGTGTTCAATTTCCGC
GTCGGATCCAACTATCCGCACGAGCCGCCCAAGGTGAAGTGCGCCACCCA
GGTGTACCATCCCAATATTGACCTGGATGGCAACGTCTGCCTCAACATTC
TGCGCGAGGACTGGAATCCAGTGCTGAACATCAACTCCATCGTCTATGGC
TTGCAGTTTCTATTCTTGGAACCCAATCCCGAGGATCCGCTCAACAAGGA
GGCGGCCGACGTCCTGCAGACCAACCGCCGTCAGTTCGAGAACAATGTAA
AGAAGGCGATGCGTGGTGGCTGTGTGGGCGAGACCTACTTCGAGTGCTGT
CTGCTCAAGTGAAAGCTTTCTAGACCAT

BS06070.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2M-RC 546 CG7375-PC 1..546 17..562 2730 100 Plus
UbcE2M-RB 546 CG7375-PB 1..546 17..562 2730 100 Plus
UbcE2M-RA 546 CG7375-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2M-RC 1729 CG7375-RC 291..836 17..562 2730 100 Plus
UbcE2M-RB 916 CG7375-RB 164..709 17..562 2730 100 Plus
UbcE2M-RA 913 CG7375-RA 161..706 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8197141..8197445 419..115 1525 100 Minus
3L 28110227 3L 8196740..8196884 562..418 725 100 Minus
3L 28110227 3L 8197522..8197621 116..17 500 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:50:08 has no hits.

BS06070.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:33 Download gff for BS06070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7375-RA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:54 Download gff for BS06070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7375-RA 160..705 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:51 Download gff for BS06070.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc12-RA 161..705 17..561 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:34 Download gff for BS06070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7375-RA 160..705 17..562 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:16 Download gff for BS06070.complete
Subject Subject Range Query Range Percent Splice Strand
UbcE2M-RA 161..705 17..561 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:16 Download gff for BS06070.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8196741..8196883 419..561 100 <- Minus
3L 8197142..8197443 117..418 100 <- Minus
3L 8197522..8197621 17..116 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:51 Download gff for BS06070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8189841..8189983 419..561 100 <- Minus
arm_3L 8190242..8190543 117..418 100 <- Minus
arm_3L 8190622..8190721 17..116 100   Minus

BS06070.pep Sequence

Translation from 16 to 561

> BS06070.pep
MIKLFTLKQQKKDGEQKGSQQKKASAAQLRIQKDINELNLPNTCATDFPD
PNDLLNFKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPN
IDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVL
QTNRRQFENNVKKAMRGGCVGETYFECCLLK*

BS06070.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2M-PC 181 CG7375-PC 1..181 1..181 975 100 Plus
UbcE2M-PB 181 CG7375-PB 1..181 1..181 975 100 Plus
UbcE2M-PA 181 CG7375-PA 1..181 1..181 975 100 Plus
Ubc6-PC 151 CG2013-PC 2..151 24..176 249 31 Plus
Ubc6-PA 151 CG2013-PA 2..151 24..176 249 31 Plus