Clone Sequence Records
BS06071.3prime Sequence
822 bp (762 high quality bases) assembled on 2005-12-03
> BS06071.3prime
ATGGTCTAGAAAGCTTTCACTTGCCACCGGCAGTGAATTTGGAGAGCTTT
TCCAGCAGACCAATGTAGGAAGTGTGCTCATGGGCAGTGGCTAGGTCCGA
CAGTTTTTCGGCAAACTCCTGACTGATGCCCTTCTCCTCCAGCAAGTTGA
TCAGCAAGTCGTACAAGTAACCGTCAAGCACGTCGCCTGCGACGGCGTAG
ACCTTATCGTTCCACTCGCCCTCGAAGATGGCCATTTCATCAATGGAGAA
GACATCGTTGTACTCGCCCTCCTGAGCTTCGCCTTGAAGGAAGCTGCAGG
TAAAGGACAGCGTAGAGTTGCCCTTTATGATGTCCACCTCGAACTGGGGC
TTGCTTCTCATTTCACCGAGATCCGGCTTGTCAGCATTGGGGTTGATTTC
GGGCTCCTCCTCGCTGTCCACCGTATGGTTCACATTGAAGCTGACCACCA
CCTTTTCCTTATCCGTCTGCTTGGTGAGCTCCACATCGGCGCCGGTCAGT
TTTACGGCGAATCCATCCAGGGTGCTTGGCACCGTCTTGCCCTTTTGAAC
CTTGCGCTCGGCCACTATCTCCTCGGTGAGGAACTCCACCAGTTCCCGCT
CACATTTGGTGTGCACGTTGCAGCCGCACGTGCAATTAATGCTGGGCTTG
TGGAGATTCAACACGGTTACATGATCGGATCCTCCGGCTGTCACCGGCTT
TTTGGTCATGTGCCACAGGCTGCGGGTGAAATCGCGCTTGCCGAGAGATC
CGGCACTGGAGCTGGCCAGAGCGGCAAATCGCATGGTTGCTGTCCTTAGG
CTGTTCATGTCGACTGATAACT
BS06071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6459-PA | 792 | CG6459-RA | 1..792 | 808..17 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P32-RA | 1154 | CG6459-RA | 107..899 | 808..16 | 3965 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17671865..17672209 | 259..603 | 1725 | 100 | Plus |
2R | 25286936 | 2R | 17671564..17671806 | 16..258 | 1215 | 100 | Plus |
2R | 25286936 | 2R | 17672328..17672534 | 602..808 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:33:29 has no hits.
BS06071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:19 Download gff for
BS06071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:39 Download gff for
BS06071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:59 Download gff for
BS06071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..903 | 11..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:36 Download gff for
BS06071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..903 | 11..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:36 Download gff for
BS06071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17671560..17671806 | 11..258 | 99 | <- | Plus |
2R | 17671865..17672209 | 259..603 | 100 | <- | Plus |
2R | 17672330..17672534 | 604..808 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:59 Download gff for
BS06071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13559065..13559311 | 11..258 | 99 | <- | Plus |
arm_2R | 13559370..13559714 | 259..603 | 100 | <- | Plus |
arm_2R | 13559835..13560039 | 604..808 | 100 | | Plus |
BS06071.5prime Sequence
822 bp (770 high quality bases) assembled on 2005-12-03
> BS06071.5prime
GAAGTTATCAGTCGACATGAACAGCCTAAGGACAGCAACCATGCGATTTG
CCGCTCTGGCCAGCTCCAGTGCCGGATCTCTCGGCAAGCGCGATTTCACC
CGCAGCCTGTGGCACATGACCAAAAAGCCGGTGACAGCCGGAGGATCCGA
TCATGTAACCGTGTTGAATCTCCACAAGCCCAGCATTAATTGCACGTGCG
GCTGCAACGTGCACACCAAATGTGAGCGGGAACTGGTGGAGTTCCTCACC
GAGGAGATAGTGGCCGAGCGCAAGGTTCAAAAGGGCAAGACGGTGCCAAG
CACCCTGGATGGATTCGCCGTAAAACTGACCGGCGCCGATGTGGAGCTCA
CCAAGCAGACGGATAAGGAAAAGGTGGTGGTCAGCTTCAATGTGAACCAT
ACGGTGGACAGCGAGGAGGAGCCCGAAATCAACCCCAATGCTGACAAGCC
GGATCTCGGTGAAATGAGAAGCAAGCCCCAGTTCGAGGTGGACATCATAA
AGGGCAACTCTACGCTGTCCTTTACCTGCAGCTTCCTTCAAGGCGAAGCT
CAGGAGGGCGAGTACAACGATGTCTTCTCCATTGATGAAATGGCCATCTT
CGAGGGCGAGTGGAACGATAAGGTCTACGCCGTCGCAGGCGACGTGCTTG
ACGGTTACTTGTACGACTTGCTGATCAACTTGCTGGAGGAGAAGGGCATC
AGTCAGGAGTTTGCCGAANAACTGTCGGACCTAGCCACTGCCCATGAGCA
CACTTCCTACATTGGTCTGCTGGAAAAGCTCTCCAAATTCACTGCCGGTG
GCAAGTGAAAGCTTTCTAGACC
BS06071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6459-PA | 792 | CG6459-RA | 1..792 | 17..808 | 3941 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P32-RA | 1154 | CG6459-RA | 107..899 | 17..809 | 3954 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17671865..17672209 | 566..222 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 17671564..17671806 | 809..567 | 1204 | 99.6 | Minus |
2R | 25286936 | 2R | 17672328..17672534 | 223..17 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:40:11 has no hits.
BS06071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:20 Download gff for
BS06071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:40 Download gff for
BS06071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:19:29 Download gff for
BS06071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..903 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:40:37 Download gff for
BS06071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..903 | 17..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:40:37 Download gff for
BS06071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17671560..17671806 | 567..814 | 98 | <- | Minus |
2R | 17671865..17672209 | 222..566 | 100 | <- | Minus |
2R | 17672330..17672534 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:19:29 Download gff for
BS06071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13559065..13559311 | 567..814 | 98 | <- | Minus |
arm_2R | 13559370..13559714 | 222..566 | 100 | <- | Minus |
arm_2R | 13559835..13560039 | 17..221 | 100 | | Minus |
BS06071.complete Sequence
824 bp (824 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635337
> BS06071.complete
GAAGTTATCAGTCGACATGAACAGCCTAAGGACAGCAACCATGCGATTTG
CCGCTCTGGCCAGCTCCAGTGCCGGATCTCTCGGCAAGCGCGATTTCACC
CGCAGCCTGTGGCACATGACCAAAAAGCCGGTGACAGCCGGAGGATCCGA
TCATGTAACCGTGTTGAATCTCCACAAGCCCAGCATTAATTGCACGTGCG
GCTGCAACGTGCACACCAAATGTGAGCGGGAACTGGTGGAGTTCCTCACC
GAGGAGATAGTGGCCGAGCGCAAGGTTCAAAAGGGCAAGACGGTGCCAAG
CACCCTGGATGGATTCGCCGTAAAACTGACCGGCGCCGATGTGGAGCTCA
CCAAGCAGACGGATAAGGAAAAGGTGGTGGTCAGCTTCAATGTGAACCAT
ACGGTGGACAGCGAGGAGGAGCCCGAAATCAACCCCAATGCTGACAAGCC
GGATCTCGGTGAAATGAGAAGCAAGCCCCAGTTCGAGGTGGACATCATAA
AGGGCAACTCTACGCTGTCCTTTACCTGCAGCTTCCTTCAAGGCGAAGCT
CAGGAGGGCGAGTACAACGATGTCTTCTCCATTGATGAAATGGCCATCTT
CGAGGGCGAGTGGAACGATAAGGTCTACGCCGTCGCAGGCGACGTGCTTG
ACGGTTACTTGTACGACTTGCTGATCAACTTGCTGGAGGAGAAGGGCATC
AGTCAGGAGTTTGCCGAAAAACTGTCGGACCTAGCCACTGCCCATGAGCA
CACTTCCTACATTGGTCTGCTGGAAAAGCTCTCCAAATTCACTGCCGGTG
GCAAGTGAAAGCTTTCTAGACCAT
BS06071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P32-RA | 792 | CG6459-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P32-RA | 1154 | CG6459-RA | 107..899 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17671865..17672209 | 566..222 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 17671564..17671806 | 809..567 | 1215 | 100 | Minus |
2R | 25286936 | 2R | 17672328..17672534 | 223..17 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:47:29 has no hits.
BS06071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:32 Download gff for
BS06071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-RA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:29 Download gff for
BS06071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-RA | 102..898 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:51 Download gff for
BS06071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..897 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:32 Download gff for
BS06071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-RA | 102..898 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:59 Download gff for
BS06071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..897 | 17..807 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:59 Download gff for
BS06071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17671566..17671806 | 567..807 | 100 | <- | Minus |
2R | 17671865..17672209 | 222..566 | 100 | <- | Minus |
2R | 17672330..17672534 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:51 Download gff for
BS06071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13559835..13560039 | 17..221 | 100 | | Minus |
arm_2R | 13559071..13559311 | 567..807 | 100 | <- | Minus |
arm_2R | 13559370..13559714 | 222..566 | 100 | <- | Minus |
BS06071.pep Sequence
Translation from 16 to 807
> BS06071.pep
MNSLRTATMRFAALASSSAGSLGKRDFTRSLWHMTKKPVTAGGSDHVTVL
NLHKPSINCTCGCNVHTKCERELVEFLTEEIVAERKVQKGKTVPSTLDGF
AVKLTGADVELTKQTDKEKVVVSFNVNHTVDSEEEPEINPNADKPDLGEM
RSKPQFEVDIIKGNSTLSFTCSFLQGEAQEGEYNDVFSIDEMAIFEGEWN
DKVYAVAGDVLDGYLYDLLINLLEEKGISQEFAEKLSDLATAHEHTSYIG
LLEKLSKFTAGGK*
BS06071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P32-PA | 263 | CG6459-PA | 1..263 | 1..263 | 1358 | 100 | Plus |