Clone BS06075 Report

Search the DGRC for BS06075

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptNAA20-RA
Protein status:BS06075.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06075.3prime Sequence

558 bp (557 high quality bases) assembled on 2005-12-03

> BS06075.3prime
ATGGTCTAGAAAGCTTTCAATTCATATCTATATGTTCCAGTCGTACAGGC
TGCGTGTACGGTATGACCGACTTTTTGTTGACGTCCCTGGATAAGGCCTT
TCTCATGTCGTACGCATCCTCGTCCTGGTCGCCGGAGTAGTACTCAAGTA
TGGTGCGGTATATGATGTAGCCAAGGTTCGTGTACATGTTTATTGCCACC
TGGTTGCTCTTCCTCACAAAAAGATCCACAAAGTATGCTCGCTTTTTCTC
CGAAATGTCCTCCAGGAAACTCATGAGCAGCGCAGCCAGACCAAGGCGCC
GGTAGTCGGGCGAGACGGTCAGCGCAGTCACGTGTCCGTGCCAGTTGTCC
AGGTGTCCCTCCACCTTGCCCATGATGTAGCCCATTATTTGTCCGCTGGG
CGACTCCGCAAGCTGAAAGTACTCCGGCCACTTGGCCAGGTACTGGGTGT
AGAAGGACAGCCCGTAGGTCTCCGTAAGTGGGTCAAAGTTTACATTGTTG
AACTTAAAGAGGTCGTCGCAGGTGAAGGGTCGCAACGTGGTCATGTCGAC
TGATAACT

BS06075.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14222-PA 528 CG14222-RA 1..528 544..17 2640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
NAA20-RD 1247 CG14222-RD 110..637 544..17 2640 100 Minus
NAA20-RC 1242 CG14222-RC 110..637 544..17 2640 100 Minus
NAA20-RA 1233 CG14222-RA 110..637 544..17 2640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19622335..19622471 109..245 685 100 Plus
X 23542271 X 19622537..19622666 246..375 650 100 Plus
X 23542271 X 19622729..19622844 376..491 580 100 Plus
X 23542271 X 19622173..19622265 17..109 465 100 Plus
X 23542271 X 19622913..19622965 492..544 265 100 Plus
Blast to na_te.dros performed on 2015-02-03 13:28:04 has no hits.

BS06075.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:25 Download gff for BS06075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14222-PA 1..528 17..544 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:46 Download gff for BS06075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14222-PA 1..528 17..544 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:00:40 Download gff for BS06075.3prime
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..646 9..544 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:49:42 Download gff for BS06075.3prime
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..646 9..544 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:49:42 Download gff for BS06075.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19622164..19622264 9..108 96 <- Plus
X 19622335..19622471 109..245 100 <- Plus
X 19622537..19622666 246..375 100 <- Plus
X 19622729..19622844 376..491 100 <- Plus
X 19622913..19622965 492..544 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:00:40 Download gff for BS06075.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19516570..19516699 246..375 100 <- Plus
arm_X 19516762..19516877 376..491 100 <- Plus
arm_X 19516946..19516998 492..544 100   Plus
arm_X 19516368..19516504 109..245 100 <- Plus
arm_X 19516197..19516297 9..108 96 <- Plus

BS06075.5prime Sequence

558 bp (557 high quality bases) assembled on 2005-12-03

> BS06075.5prime
GAAGTTATCAGTCGACATGACCACGTTGCGACCCTTCACCTGCGACGACC
TCTTTAAGTTCAACAATGTAAACTTTGACCCACTTACGGAGACCTACGGG
CTGTCCTTCTACACCCAGTACCTGGCCAAGTGGCCGGAGTACTTTCAGCT
TGCGGAGTCGCCCAGCGGACAAATAATGGGCTACATCATGGGCAAGGTGG
AGGGACACCTGGACAACTGGCACGGACACGTGACTGCGCTGACCGTCTCG
CCCGACTACCGGCGCCTTGGTCTGGCTGCGCTGCTCATGAGTTTCCTGGA
GGACATTTCGGAGAAAAAGCGAGCATACTTTGTGGATCTTTTTGTGAGGA
AGAGCAACCAGGTGGCAATAAACATGTACACGAACCTTGGCTACATCATA
TACCGCACCATACTTGAGTACTACTCCGGCGACCAGGACGAGGATGCGTA
CGACATGAGAAAGGCCTTATCCAGGGACGTCAACAAAAAGTCGGTCATAC
CGTACACGCAGCCTGTACGACTGGAACATATAGATATGAATTGAAAGCTT
TCTAGACC

BS06075.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14222-PA 528 CG14222-RA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
NAA20-RD 1247 CG14222-RD 110..637 17..544 2640 100 Plus
NAA20-RC 1242 CG14222-RC 110..637 17..544 2640 100 Plus
NAA20-RA 1233 CG14222-RA 110..637 17..544 2640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19622335..19622471 452..316 685 100 Minus
X 23542271 X 19622537..19622666 315..186 650 100 Minus
X 23542271 X 19622729..19622844 185..70 580 100 Minus
X 23542271 X 19622173..19622265 544..452 465 100 Minus
X 23542271 X 19622913..19622965 69..17 265 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:22:13 has no hits.

BS06075.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:26 Download gff for BS06075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14222-PA 1..528 17..544 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:47 Download gff for BS06075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14222-PA 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:33:18 Download gff for BS06075.5prime
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..646 17..552 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:02 Download gff for BS06075.5prime
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..646 17..552 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:02 Download gff for BS06075.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19622164..19622264 453..552 96 <- Minus
X 19622335..19622471 316..452 100 <- Minus
X 19622537..19622666 186..315 100 <- Minus
X 19622729..19622844 70..185 100 <- Minus
X 19622913..19622965 17..69 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:33:18 Download gff for BS06075.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19516197..19516297 453..552 96 <- Minus
arm_X 19516368..19516504 316..452 100 <- Minus
arm_X 19516570..19516699 186..315 100 <- Minus
arm_X 19516762..19516877 70..185 100 <- Minus
arm_X 19516946..19516998 17..69 100   Minus

BS06075.complete Sequence

560 bp (560 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635338

> BS06075.complete
GAAGTTATCAGTCGACATGACCACGTTGCGACCCTTCACCTGCGACGACC
TCTTTAAGTTCAACAATGTAAACTTTGACCCACTTACGGAGACCTACGGG
CTGTCCTTCTACACCCAGTACCTGGCCAAGTGGCCGGAGTACTTTCAGCT
TGCGGAGTCGCCCAGCGGACAAATAATGGGCTACATCATGGGCAAGGTGG
AGGGACACCTGGACAACTGGCACGGACACGTGACTGCGCTGACCGTCTCG
CCCGACTACCGGCGCCTTGGTCTGGCTGCGCTGCTCATGAGTTTCCTGGA
GGACATTTCGGAGAAAAAGCGAGCATACTTTGTGGATCTTTTTGTGAGGA
AGAGCAACCAGGTGGCAATAAACATGTACACGAACCTTGGCTACATCATA
TACCGCACCATACTTGAGTACTACTCCGGCGACCAGGACGAGGATGCGTA
CGACATGAGAAAGGCCTTATCCAGGGACGTCAACAAAAAGTCGGTCATAC
CGTACACGCAGCCTGTACGACTGGAACATATAGATATGAATTGAAAGCTT
TCTAGACCAT

BS06075.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
NAA20-RD 528 CG14222-PD 1..528 17..544 2640 100 Plus
NAA20-RC 528 CG14222-PC 1..528 17..544 2640 100 Plus
NAA20-RA 528 CG14222-PA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
NAA20-RD 1247 CG14222-RD 110..637 17..544 2640 100 Plus
NAA20-RC 1242 CG14222-RC 110..637 17..544 2640 100 Plus
NAA20-RA 1233 CG14222-RA 110..637 17..544 2640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19622335..19622471 452..316 685 100 Minus
X 23542271 X 19622537..19622666 315..186 650 100 Minus
X 23542271 X 19622729..19622844 185..70 580 100 Minus
X 23542271 X 19622173..19622265 544..452 465 100 Minus
X 23542271 X 19622913..19622965 69..17 265 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:17:13 has no hits.

BS06075.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:33 Download gff for BS06075.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:31 Download gff for BS06075.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 108..644 17..552 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:12 Download gff for BS06075.complete
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..636 17..543 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:33 Download gff for BS06075.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 108..644 17..552 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:44 Download gff for BS06075.complete
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..636 17..543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:44 Download gff for BS06075.complete
Subject Subject Range Query Range Percent Splice Strand
X 19622729..19622844 70..185 100 <- Minus
X 19622913..19622965 17..69 100   Minus
X 19622174..19622264 453..543 100 <- Minus
X 19622335..19622471 316..452 100 <- Minus
X 19622537..19622666 186..315 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:12 Download gff for BS06075.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19516762..19516877 70..185 100 <- Minus
arm_X 19516946..19516998 17..69 100   Minus
arm_X 19516207..19516297 453..543 100 <- Minus
arm_X 19516368..19516504 316..452 100 <- Minus
arm_X 19516570..19516699 186..315 100 <- Minus

BS06075.pep Sequence

Translation from 16 to 543

> BS06075.pep
MTTLRPFTCDDLFKFNNVNFDPLTETYGLSFYTQYLAKWPEYFQLAESPS
GQIMGYIMGKVEGHLDNWHGHVTALTVSPDYRRLGLAALLMSFLEDISEK
KRAYFVDLFVRKSNQVAINMYTNLGYIIYRTILEYYSGDQDEDAYDMRKA
LSRDVNKKSVIPYTQPVRLEHIDMN*

BS06075.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
NAA20-PD 175 CG14222-PD 1..175 1..175 929 100 Plus
NAA20-PC 175 CG14222-PC 1..175 1..175 929 100 Plus
NAA20-PA 175 CG14222-PA 1..175 1..175 929 100 Plus
NAA20-PB 180 CG14222-PB 1..172 1..172 888 96.5 Plus
CG31851-PB 204 CG31851-PB 1..167 1..160 343 40 Plus