Clone Sequence Records
BS06075.3prime Sequence
558 bp (557 high quality bases) assembled on 2005-12-03
> BS06075.3prime
ATGGTCTAGAAAGCTTTCAATTCATATCTATATGTTCCAGTCGTACAGGC
TGCGTGTACGGTATGACCGACTTTTTGTTGACGTCCCTGGATAAGGCCTT
TCTCATGTCGTACGCATCCTCGTCCTGGTCGCCGGAGTAGTACTCAAGTA
TGGTGCGGTATATGATGTAGCCAAGGTTCGTGTACATGTTTATTGCCACC
TGGTTGCTCTTCCTCACAAAAAGATCCACAAAGTATGCTCGCTTTTTCTC
CGAAATGTCCTCCAGGAAACTCATGAGCAGCGCAGCCAGACCAAGGCGCC
GGTAGTCGGGCGAGACGGTCAGCGCAGTCACGTGTCCGTGCCAGTTGTCC
AGGTGTCCCTCCACCTTGCCCATGATGTAGCCCATTATTTGTCCGCTGGG
CGACTCCGCAAGCTGAAAGTACTCCGGCCACTTGGCCAGGTACTGGGTGT
AGAAGGACAGCCCGTAGGTCTCCGTAAGTGGGTCAAAGTTTACATTGTTG
AACTTAAAGAGGTCGTCGCAGGTGAAGGGTCGCAACGTGGTCATGTCGAC
TGATAACT
BS06075.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14222-PA | 528 | CG14222-RA | 1..528 | 544..17 | 2640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NAA20-RD | 1247 | CG14222-RD | 110..637 | 544..17 | 2640 | 100 | Minus |
NAA20-RC | 1242 | CG14222-RC | 110..637 | 544..17 | 2640 | 100 | Minus |
NAA20-RA | 1233 | CG14222-RA | 110..637 | 544..17 | 2640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19622335..19622471 | 109..245 | 685 | 100 | Plus |
X | 23542271 | X | 19622537..19622666 | 246..375 | 650 | 100 | Plus |
X | 23542271 | X | 19622729..19622844 | 376..491 | 580 | 100 | Plus |
X | 23542271 | X | 19622173..19622265 | 17..109 | 465 | 100 | Plus |
X | 23542271 | X | 19622913..19622965 | 492..544 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:28:04 has no hits.
BS06075.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:25 Download gff for
BS06075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-PA | 1..528 | 17..544 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:46 Download gff for
BS06075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-PA | 1..528 | 17..544 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:00:40 Download gff for
BS06075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..646 | 9..544 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:49:42 Download gff for
BS06075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..646 | 9..544 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:49:42 Download gff for
BS06075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19622164..19622264 | 9..108 | 96 | <- | Plus |
X | 19622335..19622471 | 109..245 | 100 | <- | Plus |
X | 19622537..19622666 | 246..375 | 100 | <- | Plus |
X | 19622729..19622844 | 376..491 | 100 | <- | Plus |
X | 19622913..19622965 | 492..544 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:00:40 Download gff for
BS06075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19516570..19516699 | 246..375 | 100 | <- | Plus |
arm_X | 19516762..19516877 | 376..491 | 100 | <- | Plus |
arm_X | 19516946..19516998 | 492..544 | 100 | | Plus |
arm_X | 19516368..19516504 | 109..245 | 100 | <- | Plus |
arm_X | 19516197..19516297 | 9..108 | 96 | <- | Plus |
BS06075.5prime Sequence
558 bp (557 high quality bases) assembled on 2005-12-03
> BS06075.5prime
GAAGTTATCAGTCGACATGACCACGTTGCGACCCTTCACCTGCGACGACC
TCTTTAAGTTCAACAATGTAAACTTTGACCCACTTACGGAGACCTACGGG
CTGTCCTTCTACACCCAGTACCTGGCCAAGTGGCCGGAGTACTTTCAGCT
TGCGGAGTCGCCCAGCGGACAAATAATGGGCTACATCATGGGCAAGGTGG
AGGGACACCTGGACAACTGGCACGGACACGTGACTGCGCTGACCGTCTCG
CCCGACTACCGGCGCCTTGGTCTGGCTGCGCTGCTCATGAGTTTCCTGGA
GGACATTTCGGAGAAAAAGCGAGCATACTTTGTGGATCTTTTTGTGAGGA
AGAGCAACCAGGTGGCAATAAACATGTACACGAACCTTGGCTACATCATA
TACCGCACCATACTTGAGTACTACTCCGGCGACCAGGACGAGGATGCGTA
CGACATGAGAAAGGCCTTATCCAGGGACGTCAACAAAAAGTCGGTCATAC
CGTACACGCAGCCTGTACGACTGGAACATATAGATATGAATTGAAAGCTT
TCTAGACC
BS06075.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14222-PA | 528 | CG14222-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NAA20-RD | 1247 | CG14222-RD | 110..637 | 17..544 | 2640 | 100 | Plus |
NAA20-RC | 1242 | CG14222-RC | 110..637 | 17..544 | 2640 | 100 | Plus |
NAA20-RA | 1233 | CG14222-RA | 110..637 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19622335..19622471 | 452..316 | 685 | 100 | Minus |
X | 23542271 | X | 19622537..19622666 | 315..186 | 650 | 100 | Minus |
X | 23542271 | X | 19622729..19622844 | 185..70 | 580 | 100 | Minus |
X | 23542271 | X | 19622173..19622265 | 544..452 | 465 | 100 | Minus |
X | 23542271 | X | 19622913..19622965 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:22:13 has no hits.
BS06075.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:26 Download gff for
BS06075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-PA | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:47 Download gff for
BS06075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-PA | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:33:18 Download gff for
BS06075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..646 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:02 Download gff for
BS06075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..646 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:02 Download gff for
BS06075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19622164..19622264 | 453..552 | 96 | <- | Minus |
X | 19622335..19622471 | 316..452 | 100 | <- | Minus |
X | 19622537..19622666 | 186..315 | 100 | <- | Minus |
X | 19622729..19622844 | 70..185 | 100 | <- | Minus |
X | 19622913..19622965 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:33:18 Download gff for
BS06075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19516197..19516297 | 453..552 | 96 | <- | Minus |
arm_X | 19516368..19516504 | 316..452 | 100 | <- | Minus |
arm_X | 19516570..19516699 | 186..315 | 100 | <- | Minus |
arm_X | 19516762..19516877 | 70..185 | 100 | <- | Minus |
arm_X | 19516946..19516998 | 17..69 | 100 | | Minus |
BS06075.complete Sequence
560 bp (560 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635338
> BS06075.complete
GAAGTTATCAGTCGACATGACCACGTTGCGACCCTTCACCTGCGACGACC
TCTTTAAGTTCAACAATGTAAACTTTGACCCACTTACGGAGACCTACGGG
CTGTCCTTCTACACCCAGTACCTGGCCAAGTGGCCGGAGTACTTTCAGCT
TGCGGAGTCGCCCAGCGGACAAATAATGGGCTACATCATGGGCAAGGTGG
AGGGACACCTGGACAACTGGCACGGACACGTGACTGCGCTGACCGTCTCG
CCCGACTACCGGCGCCTTGGTCTGGCTGCGCTGCTCATGAGTTTCCTGGA
GGACATTTCGGAGAAAAAGCGAGCATACTTTGTGGATCTTTTTGTGAGGA
AGAGCAACCAGGTGGCAATAAACATGTACACGAACCTTGGCTACATCATA
TACCGCACCATACTTGAGTACTACTCCGGCGACCAGGACGAGGATGCGTA
CGACATGAGAAAGGCCTTATCCAGGGACGTCAACAAAAAGTCGGTCATAC
CGTACACGCAGCCTGTACGACTGGAACATATAGATATGAATTGAAAGCTT
TCTAGACCAT
BS06075.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NAA20-RD | 528 | CG14222-PD | 1..528 | 17..544 | 2640 | 100 | Plus |
NAA20-RC | 528 | CG14222-PC | 1..528 | 17..544 | 2640 | 100 | Plus |
NAA20-RA | 528 | CG14222-PA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NAA20-RD | 1247 | CG14222-RD | 110..637 | 17..544 | 2640 | 100 | Plus |
NAA20-RC | 1242 | CG14222-RC | 110..637 | 17..544 | 2640 | 100 | Plus |
NAA20-RA | 1233 | CG14222-RA | 110..637 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19622335..19622471 | 452..316 | 685 | 100 | Minus |
X | 23542271 | X | 19622537..19622666 | 315..186 | 650 | 100 | Minus |
X | 23542271 | X | 19622729..19622844 | 185..70 | 580 | 100 | Minus |
X | 23542271 | X | 19622173..19622265 | 544..452 | 465 | 100 | Minus |
X | 23542271 | X | 19622913..19622965 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:17:13 has no hits.
BS06075.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:33 Download gff for
BS06075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-RA | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:31 Download gff for
BS06075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-RA | 108..644 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:12 Download gff for
BS06075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..636 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:33 Download gff for
BS06075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-RA | 108..644 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:44 Download gff for
BS06075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..636 | 17..543 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:44 Download gff for
BS06075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19622729..19622844 | 70..185 | 100 | <- | Minus |
X | 19622913..19622965 | 17..69 | 100 | | Minus |
X | 19622174..19622264 | 453..543 | 100 | <- | Minus |
X | 19622335..19622471 | 316..452 | 100 | <- | Minus |
X | 19622537..19622666 | 186..315 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:12 Download gff for
BS06075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19516762..19516877 | 70..185 | 100 | <- | Minus |
arm_X | 19516946..19516998 | 17..69 | 100 | | Minus |
arm_X | 19516207..19516297 | 453..543 | 100 | <- | Minus |
arm_X | 19516368..19516504 | 316..452 | 100 | <- | Minus |
arm_X | 19516570..19516699 | 186..315 | 100 | <- | Minus |
BS06075.pep Sequence
Translation from 16 to 543
> BS06075.pep
MTTLRPFTCDDLFKFNNVNFDPLTETYGLSFYTQYLAKWPEYFQLAESPS
GQIMGYIMGKVEGHLDNWHGHVTALTVSPDYRRLGLAALLMSFLEDISEK
KRAYFVDLFVRKSNQVAINMYTNLGYIIYRTILEYYSGDQDEDAYDMRKA
LSRDVNKKSVIPYTQPVRLEHIDMN*
BS06075.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NAA20-PD | 175 | CG14222-PD | 1..175 | 1..175 | 929 | 100 | Plus |
NAA20-PC | 175 | CG14222-PC | 1..175 | 1..175 | 929 | 100 | Plus |
NAA20-PA | 175 | CG14222-PA | 1..175 | 1..175 | 929 | 100 | Plus |
NAA20-PB | 180 | CG14222-PB | 1..172 | 1..172 | 888 | 96.5 | Plus |
CG31851-PB | 204 | CG31851-PB | 1..167 | 1..160 | 343 | 40 | Plus |