Clone BS06076 Report

Search the DGRC for BS06076

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG7197-RA
Protein status:BS06076.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06076.3prime Sequence

570 bp (569 high quality bases) assembled on 2005-12-03

> BS06076.3prime
ATGGTCTAGAAAGCTTTCATTTGTTCTTGATGCGCTGCACGATCCACTCT
AATCCTTGATAGAGTCCTTCGCCGGTGAGCGCACAGCAGGCCTGGATGTG
CCATTGGTGCTTCTTGATGGAGGTGAGGTCCAGTTGTCGTGAGATTTCCG
CCGCCGACATAGAGCCCTTGAGATCCTGCTTATTGGCATAGACCAGCAAA
CTGGCCTTGCTCAGATCCTCATGTTGCAGCATCCGGTAGAGCTCTTCCCG
CGTAACAGCTAACCGTTCCCGGTCCGTGGAGTCGATGACCATGATCACCA
GCTCTGTGTTCGTGTAGTAGGTGCTCCAAGCGGCGCGCAGACTCTGCTGA
CCACCAAGATCCCAGACAAGAAAGTGTATATTCCGCCAGACGACCTCCTC
CACGTTGGAACCGATCGTGGGACTTGTGTGGACCACTTCGTTCATCAGGA
ACTGGTACAGGATGGTGGTTTTGCCCGCGTTGTCCAGACCCACCATCACC
AGCTTGTGCTCCTCGTTGCCAAACATCCGCCAGAGCCGCGATAATAACAG
TCCCATGTCGACTGATAACT

BS06076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7197-PA 540 CG7197-RA 1..540 556..17 2700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7197-RA 1339 CG7197-RA 550..1089 556..17 2700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8298751..8299290 17..556 2700 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:55:05 has no hits.

BS06076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:27 Download gff for BS06076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7197-PA 1..540 17..556 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:48 Download gff for BS06076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7197-PA 1..540 17..556 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:17 Download gff for BS06076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7197-RA 550..1089 17..556 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:33 Download gff for BS06076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7197-RA 550..1089 17..556 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:33 Download gff for BS06076.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8298751..8299290 17..556 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:17 Download gff for BS06076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8291851..8292390 17..556 100   Plus

BS06076.5prime Sequence

570 bp (569 high quality bases) assembled on 2005-12-03

> BS06076.5prime
GAAGTTATCAGTCGACATGGGACTGTTATTATCGCGGCTCTGGCGGATGT
TTGGCAACGAGGAGCACAAGCTGGTGATGGTGGGTCTGGACAACGCGGGC
AAAACCACCATCCTGTACCAGTTCCTGATGAACGAAGTGGTCCACACAAG
TCCCACGATCGGTTCCAACGTGGAGGAGGTCGTCTGGCGGAATATACACT
TTCTTGTCTGGGATCTTGGTGGTCAGCAGAGTCTGCGCGCCGCTTGGAGC
ACCTACTACACGAACACAGAGCTGGTGATCATGGTCATCGACTCCACGGA
CCGGGAACGGTTAGCTGTTACGCGGGAAGAGCTCTACCGGATGCTGCAAC
ATGAGGATCTGAGCAAGGCCAGTTTGCTGGTCTATGCCAATAAGCAGGAT
CTCAAGGGCTCTATGTCGGCGGCGGAAATCTCACGACAACTGGACCTCAC
CTCCATCAAGAAGCACCAATGGCACATCCAGGCCTGCTGTGCGCTCACCG
GCGAAGGACTCTATCAAGGATTAGAGTGGATCGTGCAGCGCATCAAGAAC
AAATGAAAGCTTTCTAGACC

BS06076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7197-PA 540 CG7197-RA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7197-RA 1339 CG7197-RA 550..1089 17..556 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8298751..8299290 556..17 2700 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:40:29 has no hits.

BS06076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:28 Download gff for BS06076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7197-PA 1..540 17..556 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:50 Download gff for BS06076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7197-PA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:41:26 Download gff for BS06076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7197-RA 550..1089 17..556 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:48:47 Download gff for BS06076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7197-RA 550..1089 17..556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:48:47 Download gff for BS06076.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8298751..8299290 17..556 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:41:26 Download gff for BS06076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8291851..8292390 17..556 100   Minus

BS06076.complete Sequence

572 bp (572 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635339

> BS06076.complete
GAAGTTATCAGTCGACATGGGACTGTTATTATCGCGGCTCTGGCGGATGT
TTGGCAACGAGGAGCACAAGCTGGTGATGGTGGGTCTGGACAACGCGGGC
AAAACCACCATCCTGTACCAGTTCCTGATGAACGAAGTGGTCCACACAAG
TCCCACGATCGGTTCCAACGTGGAGGAGGTCGTCTGGCGGAATATACACT
TTCTTGTCTGGGATCTTGGTGGTCAGCAGAGTCTGCGCGCCGCTTGGAGC
ACCTACTACACGAACACAGAGCTGGTGATCATGGTCATCGACTCCACGGA
CCGGGAACGGTTAGCTGTTACGCGGGAAGAGCTCTACCGGATGCTGCAAC
ATGAGGATCTGAGCAAGGCCAGTTTGCTGGTCTATGCCAATAAGCAGGAT
CTCAAGGGCTCTATGTCGGCGGCGGAAATCTCACGACAACTGGACCTCAC
CTCCATCAAGAAGCACCAATGGCACATCCAGGCCTGCTGTGCGCTCACCG
GCGAAGGACTCTATCAAGGATTAGAGTGGATCGTGCAGCGCATCAAGAAC
AAATGAAAGCTTTCTAGACCAT

BS06076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7197-RA 540 CG7197-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7197-RA 1339 CG7197-RA 550..1089 17..556 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8298751..8299290 556..17 2700 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:48:31 has no hits.

BS06076.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:34 Download gff for BS06076.complete
Subject Subject Range Query Range Percent Splice Strand
CG7197-RA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:32 Download gff for BS06076.complete
Subject Subject Range Query Range Percent Splice Strand
CG7197-RA 508..1047 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:58 Download gff for BS06076.complete
Subject Subject Range Query Range Percent Splice Strand
CG7197-RA 550..1088 17..555 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:34 Download gff for BS06076.complete
Subject Subject Range Query Range Percent Splice Strand
CG7197-RA 508..1047 17..556 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:53 Download gff for BS06076.complete
Subject Subject Range Query Range Percent Splice Strand
CG7197-RA 550..1088 17..555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:53 Download gff for BS06076.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8298752..8299290 17..555 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:58 Download gff for BS06076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8291852..8292390 17..555 100   Minus

BS06076.pep Sequence

Translation from 16 to 555

> BS06076.pep
MGLLLSRLWRMFGNEEHKLVMVGLDNAGKTTILYQFLMNEVVHTSPTIGS
NVEEVVWRNIHFLVWDLGGQQSLRAAWSTYYTNTELVIMVIDSTDRERLA
VTREELYRMLQHEDLSKASLLVYANKQDLKGSMSAAEISRQLDLTSIKKH
QWHIQACCALTGEGLYQGLEWIVQRIKNK*

BS06076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7197-PA 179 CG7197-PA 1..179 1..179 931 100 Plus
Arf79F-PJ 182 CG8385-PJ 1..179 1..178 493 51.4 Plus
Arf79F-PI 182 CG8385-PI 1..179 1..178 493 51.4 Plus
Arf79F-PH 182 CG8385-PH 1..179 1..178 493 51.4 Plus
Arf79F-PF 182 CG8385-PF 1..179 1..178 493 51.4 Plus