Clone Sequence Records
BS06076.3prime Sequence
570 bp (569 high quality bases) assembled on 2005-12-03
> BS06076.3prime
ATGGTCTAGAAAGCTTTCATTTGTTCTTGATGCGCTGCACGATCCACTCT
AATCCTTGATAGAGTCCTTCGCCGGTGAGCGCACAGCAGGCCTGGATGTG
CCATTGGTGCTTCTTGATGGAGGTGAGGTCCAGTTGTCGTGAGATTTCCG
CCGCCGACATAGAGCCCTTGAGATCCTGCTTATTGGCATAGACCAGCAAA
CTGGCCTTGCTCAGATCCTCATGTTGCAGCATCCGGTAGAGCTCTTCCCG
CGTAACAGCTAACCGTTCCCGGTCCGTGGAGTCGATGACCATGATCACCA
GCTCTGTGTTCGTGTAGTAGGTGCTCCAAGCGGCGCGCAGACTCTGCTGA
CCACCAAGATCCCAGACAAGAAAGTGTATATTCCGCCAGACGACCTCCTC
CACGTTGGAACCGATCGTGGGACTTGTGTGGACCACTTCGTTCATCAGGA
ACTGGTACAGGATGGTGGTTTTGCCCGCGTTGTCCAGACCCACCATCACC
AGCTTGTGCTCCTCGTTGCCAAACATCCGCCAGAGCCGCGATAATAACAG
TCCCATGTCGACTGATAACT
BS06076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7197-PA | 540 | CG7197-RA | 1..540 | 556..17 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7197-RA | 1339 | CG7197-RA | 550..1089 | 556..17 | 2700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8298751..8299290 | 17..556 | 2700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:55:05 has no hits.
BS06076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:27 Download gff for
BS06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:48 Download gff for
BS06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:17 Download gff for
BS06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-RA | 550..1089 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:33 Download gff for
BS06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-RA | 550..1089 | 17..556 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:33 Download gff for
BS06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8298751..8299290 | 17..556 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:17 Download gff for
BS06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8291851..8292390 | 17..556 | 100 | | Plus |
BS06076.5prime Sequence
570 bp (569 high quality bases) assembled on 2005-12-03
> BS06076.5prime
GAAGTTATCAGTCGACATGGGACTGTTATTATCGCGGCTCTGGCGGATGT
TTGGCAACGAGGAGCACAAGCTGGTGATGGTGGGTCTGGACAACGCGGGC
AAAACCACCATCCTGTACCAGTTCCTGATGAACGAAGTGGTCCACACAAG
TCCCACGATCGGTTCCAACGTGGAGGAGGTCGTCTGGCGGAATATACACT
TTCTTGTCTGGGATCTTGGTGGTCAGCAGAGTCTGCGCGCCGCTTGGAGC
ACCTACTACACGAACACAGAGCTGGTGATCATGGTCATCGACTCCACGGA
CCGGGAACGGTTAGCTGTTACGCGGGAAGAGCTCTACCGGATGCTGCAAC
ATGAGGATCTGAGCAAGGCCAGTTTGCTGGTCTATGCCAATAAGCAGGAT
CTCAAGGGCTCTATGTCGGCGGCGGAAATCTCACGACAACTGGACCTCAC
CTCCATCAAGAAGCACCAATGGCACATCCAGGCCTGCTGTGCGCTCACCG
GCGAAGGACTCTATCAAGGATTAGAGTGGATCGTGCAGCGCATCAAGAAC
AAATGAAAGCTTTCTAGACC
BS06076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7197-PA | 540 | CG7197-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7197-RA | 1339 | CG7197-RA | 550..1089 | 17..556 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8298751..8299290 | 556..17 | 2700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:40:29 has no hits.
BS06076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:28 Download gff for
BS06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:50 Download gff for
BS06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:41:26 Download gff for
BS06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-RA | 550..1089 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:48:47 Download gff for
BS06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-RA | 550..1089 | 17..556 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:48:47 Download gff for
BS06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8298751..8299290 | 17..556 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:41:26 Download gff for
BS06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8291851..8292390 | 17..556 | 100 | | Minus |
BS06076.complete Sequence
572 bp (572 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635339
> BS06076.complete
GAAGTTATCAGTCGACATGGGACTGTTATTATCGCGGCTCTGGCGGATGT
TTGGCAACGAGGAGCACAAGCTGGTGATGGTGGGTCTGGACAACGCGGGC
AAAACCACCATCCTGTACCAGTTCCTGATGAACGAAGTGGTCCACACAAG
TCCCACGATCGGTTCCAACGTGGAGGAGGTCGTCTGGCGGAATATACACT
TTCTTGTCTGGGATCTTGGTGGTCAGCAGAGTCTGCGCGCCGCTTGGAGC
ACCTACTACACGAACACAGAGCTGGTGATCATGGTCATCGACTCCACGGA
CCGGGAACGGTTAGCTGTTACGCGGGAAGAGCTCTACCGGATGCTGCAAC
ATGAGGATCTGAGCAAGGCCAGTTTGCTGGTCTATGCCAATAAGCAGGAT
CTCAAGGGCTCTATGTCGGCGGCGGAAATCTCACGACAACTGGACCTCAC
CTCCATCAAGAAGCACCAATGGCACATCCAGGCCTGCTGTGCGCTCACCG
GCGAAGGACTCTATCAAGGATTAGAGTGGATCGTGCAGCGCATCAAGAAC
AAATGAAAGCTTTCTAGACCAT
BS06076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7197-RA | 540 | CG7197-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7197-RA | 1339 | CG7197-RA | 550..1089 | 17..556 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8298751..8299290 | 556..17 | 2700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:48:31 has no hits.
BS06076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:34 Download gff for
BS06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-RA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:32 Download gff for
BS06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-RA | 508..1047 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:58 Download gff for
BS06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-RA | 550..1088 | 17..555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:34 Download gff for
BS06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-RA | 508..1047 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:53 Download gff for
BS06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7197-RA | 550..1088 | 17..555 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:53 Download gff for
BS06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8298752..8299290 | 17..555 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:58 Download gff for
BS06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8291852..8292390 | 17..555 | 100 | | Minus |
BS06076.pep Sequence
Translation from 16 to 555
> BS06076.pep
MGLLLSRLWRMFGNEEHKLVMVGLDNAGKTTILYQFLMNEVVHTSPTIGS
NVEEVVWRNIHFLVWDLGGQQSLRAAWSTYYTNTELVIMVIDSTDRERLA
VTREELYRMLQHEDLSKASLLVYANKQDLKGSMSAAEISRQLDLTSIKKH
QWHIQACCALTGEGLYQGLEWIVQRIKNK*
BS06076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7197-PA | 179 | CG7197-PA | 1..179 | 1..179 | 931 | 100 | Plus |
Arf79F-PJ | 182 | CG8385-PJ | 1..179 | 1..178 | 493 | 51.4 | Plus |
Arf79F-PI | 182 | CG8385-PI | 1..179 | 1..178 | 493 | 51.4 | Plus |
Arf79F-PH | 182 | CG8385-PH | 1..179 | 1..178 | 493 | 51.4 | Plus |
Arf79F-PF | 182 | CG8385-PF | 1..179 | 1..178 | 493 | 51.4 | Plus |