Clone BS06078 Report

Search the DGRC for BS06078

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG5181-RA
Protein status:BS06078.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06078.5prime Sequence

645 bp (644 high quality bases) assembled on 2005-12-03

> BS06078.5prime
GAAGTTATCAGTCGACATGTATAACGTGGAATGCATTCCTATTAAGGACA
TAAAGCCGGGTCTGAAGAACATCAATGTTATCTTTATTGTCCTGGAAGTG
GGCGTGGCCACCGTTACAAAAGAAAACCGCGAAGTGAGGAACTTCAAGGT
GGGCGATCCTACGGCCTGCATCAATGTTTCGATTTGGGACGAGCCGGGCA
AACTGATAGCACCCGGTGATATTGTCAGACTGACAAAGGGCTACGCCTCC
ATCTGGAGGCATTGTCTGACCCTTTATTCCGGAAAGAACGGCGAGGTGTT
CAAGATCGGCGAGTACTGCATGGTCTTCAACGAGAGCGTCAATATGAGTG
AACCGAAACGGGCGGAGCAGCAGGCGGTGGCAAATCCTGCTGCTACTCCG
GCGGGACTTCCGGCCGGTGGTGGTGCTCCTGGCTTGCCCGCTAAGGGTGG
TGCCACGGGCATTCCACAGCCCGCGGTGGCTGCTGCACCAGGTGCTCCCG
CCACCCAGAGCGCCGTGACCACAGCTCCTGCTGCGGCGCCAGCAATCGCA
CCCCAAACGACAACGAAACCTGGCACCCGTGGCGGCCGTGGAGGTGGAGG
ACGAGGTGGCCTTAAGGGGGAACGGCGTTAAAAGCTTTCTAGACC

BS06078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5181-PA 615 CG5181-RA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5181-RA 1214 CG5181-RA 106..721 17..632 3080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7409026..7409512 632..146 2435 100 Minus
2L 23513712 2L 7409568..7409704 153..17 685 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:53:14 has no hits.

BS06078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:32 Download gff for BS06078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5181-PA 1..615 17..631 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:57 Download gff for BS06078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5181-PA 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:54:50 Download gff for BS06078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5181-RA 96..728 8..641 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:39:55 Download gff for BS06078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5181-RA 96..728 8..641 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:39:55 Download gff for BS06078.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7409024..7409509 149..634 99 <- Minus
2L 7409573..7409710 8..148 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:54:50 Download gff for BS06078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7409024..7409509 149..634 99 <- Minus
arm_2L 7409573..7409710 8..148 97   Minus

BS06078.3prime Sequence

645 bp (644 high quality bases) assembled on 2005-12-03

> BS06078.3prime
ATGGTCTAGAAAGCTTTTAACGCCGTTCCCCCTTAAGGCCACCTCGTCCT
CCACCTCCACGGCCGCCACGGGTGCCAGGTTTCGTTGTCGTTTGGGGTGC
GATTGCTGGCGCCGCAGCAGGAGCTGTGGTCACGGCGCTCTGGGTGGCGG
GAGCACCTGGTGCAGCAGCCACCGCGGGCTGTGGAATGCCCGTGGCACCA
CCCTTAGCGGGCAAGCCAGGAGCACCACCACCGGCCGGAAGTCCCGCCGG
AGTAGCAGCAGGATTTGCCACCGCCTGCTGCTCCGCCCGTTTCGGTTCAC
TCATATTGACGCTCTCGTTGAAGACCATGCAGTACTCGCCGATCTTGAAC
ACCTCGCCGTTCTTTCCGGAATAAAGGGTCAGACAATGCCTCCAGATGGA
GGCGTAGCCCTTTGTCAGTCTGACAATATCACCGGGTGCTATCAGTTTGC
CCGGCTCGTCCCAAATCGAAACATTGATGCAGGCCGTAGGATCGCCCACC
TTGAAGTTCCTCACTTCGCGGTTTTCTTTTGTAACGGTGGCCACGCCCAC
TTCCAGGACAATAAAGATAACATTGATGTTCTTCAGACCCGGCTTTATGT
CCTTAATAGGAATGCATTCCACGTTATACATGTCGACTGATAACT

BS06078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5181-PA 615 CG5181-RA 1..615 631..17 3075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5181-RA 1214 CG5181-RA 106..721 631..16 3080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7409026..7409512 16..502 2435 100 Plus
2L 23513712 2L 7409568..7409704 495..631 685 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:59:51 has no hits.

BS06078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:31 Download gff for BS06078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5181-PA 1..615 17..631 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:55 Download gff for BS06078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5181-PA 1..615 17..631 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:55 Download gff for BS06078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5181-RA 96..728 7..640 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:12 Download gff for BS06078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5181-RA 96..728 7..640 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:12 Download gff for BS06078.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7409024..7409509 14..499 99 <- Plus
2L 7409573..7409710 500..640 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:55 Download gff for BS06078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7409024..7409509 14..499 99 <- Plus
arm_2L 7409573..7409710 500..640 97   Plus

BS06078.complete Sequence

647 bp (647 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635341

> BS06078.complete
GAAGTTATCAGTCGACATGTATAACGTGGAATGCATTCCTATTAAGGACA
TAAAGCCGGGTCTGAAGAACATCAATGTTATCTTTATTGTCCTGGAAGTG
GGCGTGGCCACCGTTACAAAAGAAAACCGCGAAGTGAGGAACTTCAAGGT
GGGCGATCCTACGGCCTGCATCAATGTTTCGATTTGGGACGAGCCGGGCA
AACTGATAGCACCCGGTGATATTGTCAGACTGACAAAGGGCTACGCCTCC
ATCTGGAGGCATTGTCTGACCCTTTATTCCGGAAAGAACGGCGAGGTGTT
CAAGATCGGCGAGTACTGCATGGTCTTCAACGAGAGCGTCAATATGAGTG
AACCGAAACGGGCGGAGCAGCAGGCGGTGGCAAATCCTGCTGCTACTCCG
GCGGGACTTCCGGCCGGTGGTGGTGCTCCTGGCTTGCCCGCTAAGGGTGG
TGCCACGGGCATTCCACAGCCCGCGGTGGCTGCTGCACCAGGTGCTCCCG
CCACCCAGAGCGCCGTGACCACAGCTCCTGCTGCGGCGCCAGCAATCGCA
CCCCAAACGACAACGAAACCTGGCACCCGTGGCGGCCGTGGAGGTGGAGG
ACGAGGTGGCCTTAAGGGGGAACGGCGTTAAAAGCTTTCTAGACCAT

BS06078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5181-RA 615 CG5181-PA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5181-RA 1214 CG5181-RA 106..721 17..632 3080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7409026..7409512 632..146 2435 100 Minus
2L 23513712 2L 7409568..7409704 153..17 685 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:43:18 has no hits.

BS06078.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:37 Download gff for BS06078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5181-RA 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:00 Download gff for BS06078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5181-RA 76..688 17..629 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:47 Download gff for BS06078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5181-RA 106..718 17..629 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:37 Download gff for BS06078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5181-RA 66..698 8..641 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:55 Download gff for BS06078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5181-RA 106..718 17..629 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:55 Download gff for BS06078.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7409573..7409704 17..148 100   Minus
2L 7409029..7409509 149..629 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:47 Download gff for BS06078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7409029..7409509 149..629 100 <- Minus
arm_2L 7409573..7409704 17..148 100   Minus

BS06078.pep Sequence

Translation from 16 to 630

> BS06078.pep
MYNVECIPIKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTA
CINVSIWDEPGKLIAPGDIVRLTKGYASIWRHCLTLYSGKNGEVFKIGEY
CMVFNESVNMSEPKRAEQQAVANPAATPAGLPAGGGAPGLPAKGGATGIP
QPAVAAAPGAPATQSAVTTAPAAAPAIAPQTTTKPGTRGGRGGGGRGGLK
GERR*

BS06078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5181-PA 204 CG5181-PA 1..204 1..204 1071 100 Plus