Clone Sequence Records
BS06078.5prime Sequence
645 bp (644 high quality bases) assembled on 2005-12-03
> BS06078.5prime
GAAGTTATCAGTCGACATGTATAACGTGGAATGCATTCCTATTAAGGACA
TAAAGCCGGGTCTGAAGAACATCAATGTTATCTTTATTGTCCTGGAAGTG
GGCGTGGCCACCGTTACAAAAGAAAACCGCGAAGTGAGGAACTTCAAGGT
GGGCGATCCTACGGCCTGCATCAATGTTTCGATTTGGGACGAGCCGGGCA
AACTGATAGCACCCGGTGATATTGTCAGACTGACAAAGGGCTACGCCTCC
ATCTGGAGGCATTGTCTGACCCTTTATTCCGGAAAGAACGGCGAGGTGTT
CAAGATCGGCGAGTACTGCATGGTCTTCAACGAGAGCGTCAATATGAGTG
AACCGAAACGGGCGGAGCAGCAGGCGGTGGCAAATCCTGCTGCTACTCCG
GCGGGACTTCCGGCCGGTGGTGGTGCTCCTGGCTTGCCCGCTAAGGGTGG
TGCCACGGGCATTCCACAGCCCGCGGTGGCTGCTGCACCAGGTGCTCCCG
CCACCCAGAGCGCCGTGACCACAGCTCCTGCTGCGGCGCCAGCAATCGCA
CCCCAAACGACAACGAAACCTGGCACCCGTGGCGGCCGTGGAGGTGGAGG
ACGAGGTGGCCTTAAGGGGGAACGGCGTTAAAAGCTTTCTAGACC
BS06078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5181-PA | 615 | CG5181-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5181-RA | 1214 | CG5181-RA | 106..721 | 17..632 | 3080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7409026..7409512 | 632..146 | 2435 | 100 | Minus |
2L | 23513712 | 2L | 7409568..7409704 | 153..17 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:53:14 has no hits.
BS06078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:32 Download gff for
BS06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-PA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:57 Download gff for
BS06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-PA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:54:50 Download gff for
BS06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-RA | 96..728 | 8..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:39:55 Download gff for
BS06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-RA | 96..728 | 8..641 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:39:55 Download gff for
BS06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7409024..7409509 | 149..634 | 99 | <- | Minus |
2L | 7409573..7409710 | 8..148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:54:50 Download gff for
BS06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7409024..7409509 | 149..634 | 99 | <- | Minus |
arm_2L | 7409573..7409710 | 8..148 | 97 | | Minus |
BS06078.3prime Sequence
645 bp (644 high quality bases) assembled on 2005-12-03
> BS06078.3prime
ATGGTCTAGAAAGCTTTTAACGCCGTTCCCCCTTAAGGCCACCTCGTCCT
CCACCTCCACGGCCGCCACGGGTGCCAGGTTTCGTTGTCGTTTGGGGTGC
GATTGCTGGCGCCGCAGCAGGAGCTGTGGTCACGGCGCTCTGGGTGGCGG
GAGCACCTGGTGCAGCAGCCACCGCGGGCTGTGGAATGCCCGTGGCACCA
CCCTTAGCGGGCAAGCCAGGAGCACCACCACCGGCCGGAAGTCCCGCCGG
AGTAGCAGCAGGATTTGCCACCGCCTGCTGCTCCGCCCGTTTCGGTTCAC
TCATATTGACGCTCTCGTTGAAGACCATGCAGTACTCGCCGATCTTGAAC
ACCTCGCCGTTCTTTCCGGAATAAAGGGTCAGACAATGCCTCCAGATGGA
GGCGTAGCCCTTTGTCAGTCTGACAATATCACCGGGTGCTATCAGTTTGC
CCGGCTCGTCCCAAATCGAAACATTGATGCAGGCCGTAGGATCGCCCACC
TTGAAGTTCCTCACTTCGCGGTTTTCTTTTGTAACGGTGGCCACGCCCAC
TTCCAGGACAATAAAGATAACATTGATGTTCTTCAGACCCGGCTTTATGT
CCTTAATAGGAATGCATTCCACGTTATACATGTCGACTGATAACT
BS06078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5181-PA | 615 | CG5181-RA | 1..615 | 631..17 | 3075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5181-RA | 1214 | CG5181-RA | 106..721 | 631..16 | 3080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7409026..7409512 | 16..502 | 2435 | 100 | Plus |
2L | 23513712 | 2L | 7409568..7409704 | 495..631 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:59:51 has no hits.
BS06078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:31 Download gff for
BS06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-PA | 1..615 | 17..631 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:55 Download gff for
BS06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-PA | 1..615 | 17..631 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:55 Download gff for
BS06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-RA | 96..728 | 7..640 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:12 Download gff for
BS06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-RA | 96..728 | 7..640 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:12 Download gff for
BS06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7409024..7409509 | 14..499 | 99 | <- | Plus |
2L | 7409573..7409710 | 500..640 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:55 Download gff for
BS06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7409024..7409509 | 14..499 | 99 | <- | Plus |
arm_2L | 7409573..7409710 | 500..640 | 97 | | Plus |
BS06078.complete Sequence
647 bp (647 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635341
> BS06078.complete
GAAGTTATCAGTCGACATGTATAACGTGGAATGCATTCCTATTAAGGACA
TAAAGCCGGGTCTGAAGAACATCAATGTTATCTTTATTGTCCTGGAAGTG
GGCGTGGCCACCGTTACAAAAGAAAACCGCGAAGTGAGGAACTTCAAGGT
GGGCGATCCTACGGCCTGCATCAATGTTTCGATTTGGGACGAGCCGGGCA
AACTGATAGCACCCGGTGATATTGTCAGACTGACAAAGGGCTACGCCTCC
ATCTGGAGGCATTGTCTGACCCTTTATTCCGGAAAGAACGGCGAGGTGTT
CAAGATCGGCGAGTACTGCATGGTCTTCAACGAGAGCGTCAATATGAGTG
AACCGAAACGGGCGGAGCAGCAGGCGGTGGCAAATCCTGCTGCTACTCCG
GCGGGACTTCCGGCCGGTGGTGGTGCTCCTGGCTTGCCCGCTAAGGGTGG
TGCCACGGGCATTCCACAGCCCGCGGTGGCTGCTGCACCAGGTGCTCCCG
CCACCCAGAGCGCCGTGACCACAGCTCCTGCTGCGGCGCCAGCAATCGCA
CCCCAAACGACAACGAAACCTGGCACCCGTGGCGGCCGTGGAGGTGGAGG
ACGAGGTGGCCTTAAGGGGGAACGGCGTTAAAAGCTTTCTAGACCAT
BS06078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5181-RA | 615 | CG5181-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5181-RA | 1214 | CG5181-RA | 106..721 | 17..632 | 3080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7409026..7409512 | 632..146 | 2435 | 100 | Minus |
2L | 23513712 | 2L | 7409568..7409704 | 153..17 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:43:18 has no hits.
BS06078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:37 Download gff for
BS06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-RA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:00 Download gff for
BS06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-RA | 76..688 | 17..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:47 Download gff for
BS06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-RA | 106..718 | 17..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:37 Download gff for
BS06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-RA | 66..698 | 8..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:55 Download gff for
BS06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5181-RA | 106..718 | 17..629 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:55 Download gff for
BS06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7409573..7409704 | 17..148 | 100 | | Minus |
2L | 7409029..7409509 | 149..629 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:47 Download gff for
BS06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7409029..7409509 | 149..629 | 100 | <- | Minus |
arm_2L | 7409573..7409704 | 17..148 | 100 | | Minus |
BS06078.pep Sequence
Translation from 16 to 630
> BS06078.pep
MYNVECIPIKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTA
CINVSIWDEPGKLIAPGDIVRLTKGYASIWRHCLTLYSGKNGEVFKIGEY
CMVFNESVNMSEPKRAEQQAVANPAATPAGLPAGGGAPGLPAKGGATGIP
QPAVAAAPGAPATQSAVTTAPAAAPAIAPQTTTKPGTRGGRGGGGRGGLK
GERR*
BS06078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5181-PA | 204 | CG5181-PA | 1..204 | 1..204 | 1071 | 100 | Plus |