Clone Sequence Records
BS06079.3prime Sequence
952 bp (832 high quality bases) assembled on 2005-12-03
> BS06079.3prime
ATGGTCTAGAAAGCTTTTAATTTGTGGACGGGGCTGTTTTGAATCTTTCC
AAGCGAGCGCGCGCCTTCTCTGACCAGGCGTCCTTGGATTCAGTTGTGGT
AGGCGTGGTGGTAGCTGCTGAGACTGCTCCTGCTCCAAATCGCTCCTTCC
GTTTCTGGAGACGATCATCGGCCTTTGAGGTCGGTGCTTTGTCAGGCACC
ACGAATCCGAAACGCTCGGCACGTTTTTTGAGTGCCTCCTTTTGCTGCTC
CTCGGTTTCCTTGTTACCTTTGTTGGCCGTAATGGAGGCACTAGAGGATT
TATTGATGGCCACTGCCACTGCGGTTGCAGTGTTGGCCACAGCGGGGGGT
GTTATGCCAAACTTTTTGGCCCGCAGTTCCAATCGCTCTTGTGCAGTCAG
CTGGTTAAGTTTCTTGTCGCCTGATGGCTTCTCTCCTTCCGTCTTTGGTC
CGACCACAATCGGCTTATGCTTCTTGGTAGGAGTTTCGCCGGTGGAGTCA
CTAGCAGCTGCAGCGGGCGCCTCGTTCTCCTTCGATGGAGTTGTCCCCGT
GCTGGCTACCGTGCCCGTCGACTGCTGGGAATTATTTCGCTTCAGAACTA
TTTTCTTGGTCGGCGCAGCTGCATCTGGGGCCGAAGACGTCTTCTCTTCC
GCTAGAAGGTCCGGAATGGCCACAGTTGTGGGTGTGCTAACCGGACTTTT
CAGTAGCTCATCGTCGTTCTCATCGCCCAGCAGCTTGTGCTCATCCTCGT
CGGTGAAAGACACATCGTCGTCGTCAATGGCATCTGCTATGGCCGAATCC
TCCAGAGAAAGGTCCCCCTCTAATAACGCGGTCTGNCATCGGTCCTGCAG
TTCGGTTTTATTTCCATTCACGGCGAGCCCTCGAAGCTTCAGCTCGCGCT
TCAATCCCGCACCTTCATTTTAGTCACGTCGCTTTTCGGCATGTCGACTG
AT
BS06079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8149-PA | 927 | CG8149-RA | 40..927 | 904..17 | 4396 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8149-RA | 1156 | CG8149-RA | 70..996 | 942..17 | 4524 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9504818..9505705 | 904..17 | 4414 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:51:35 has no hits.
BS06079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:33 Download gff for
BS06079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-PA | 1..927 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:05:59 Download gff for
BS06079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-PA | 1..927 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:47:15 Download gff for
BS06079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-RA | 70..996 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:49 Download gff for
BS06079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-RA | 70..996 | 17..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:49 Download gff for
BS06079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9504725..9504754 | 913..942 | 93 | -> | Minus |
| 3R | 9504809..9505705 | 17..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:47:15 Download gff for
BS06079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5330447..5330476 | 913..942 | 93 | -> | Minus |
| arm_3R | 5330531..5331427 | 17..912 | 99 | | Minus |
BS06079.5prime Sequence
882 bp (851 high quality bases) assembled on 2005-12-03
> BS06079.5prime
GAAGTTATCAGTCGACATGCCTGAAAGCGACGTGACTAAAATGAAGGTGG
CGGATTTGAAGCGCGAGCTGAAGCTTCGAGGGCTCGCCGTGAATGGAAAT
AAAACCGAACTGCAGGACCGATTGCAGACCGCGTTATTAGAGGGGGACCT
TTCTCTGGAGGATTCGGCCATAGCAGATGCCATTGACGACGACGATGTGT
CTTTCACCGACGAGGATGAGCACAAGCTGCTGGGCGATGAGAACGACGAT
GAGCTACTGAAAAGTCCGGTTAGCACACCCACAACTGTGGCCATTCCGGA
CCTTCTAGCGGAAGAGAAGACGTCTTCGGCCCCAGATGCAGCTGCGCCGA
CCAAGAAAATAGTTCTGAAGCGAAATAATTCCCAGCAGTCGACGGGCACG
GTAGCCAGCACGGGGACAACTCCATCGAAGGAGAACGAGGCGCCCGCTGC
AGCTGCTAGTGACTCCACCGGCGAAACTCCTACCAAGAAGCATAAGCCGA
TTGTGGTCGGACCAAAGACGGAAGGAGAGAAGCCATCAGGCGACAAGAAA
CTTAACCAGCTGACTGCACAAGAGCGATTGGAACTGCGGGCCAAAAAGTT
TGGCATAACACCCCCCGCTGTGGCCAACACTGCAACCGCAGTGGCAGTGG
CCATCAATAAATCCTCTAGTGCCTCCATTACGGCCAACAAAGGTAACAAG
GAAACCGAGGAGCAGCAAAAGGAGGCACTCAAAAAACGTGCCGAGCGTTT
CGGATTCGTGGTGCCTGACAAAGCACCGACCTCAAAGGCCGATGATCGTC
TCCAGAAACGGAAGGAGCGATTTGGAGCANGAGCAGTCTCAGCAGCTACC
ACCACGCCTACCACAACTGAATCCAAGGACGC
BS06079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8149-PA | 927 | CG8149-RA | 1..866 | 17..882 | 4311 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8149-RA | 1156 | CG8149-RA | 70..935 | 17..882 | 4319 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9504807..9505644 | 45..882 | 4179 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:48:29 has no hits.
BS06079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:34 Download gff for
BS06079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:01 Download gff for
BS06079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:59:55 Download gff for
BS06079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-RA | 65..935 | 10..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:11 Download gff for
BS06079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-RA | 65..935 | 10..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:11 Download gff for
BS06079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9504809..9505644 | 47..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:59:55 Download gff for
BS06079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5330531..5331366 | 47..882 | 99 | | Plus |
BS06079.complete Sequence
959 bp (959 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635342
> BS06079.complete
GAAGTTATCAGTCGACATGCCTGAAAGCGACGTGACTAAAATGAAGGTGG
CGGATTTGAAGCGCGAGCTGAAGCTTCGAGGGCTCGCCGTGAATGGAAAT
AAAACCGAACTGCAGGACCGATTGCAGACCGCGTTATTAGAGGGGGACCT
TTCTCTGGAGGATTCGGCCATAGCAGATGCCATTGACGACGACGATGTGT
CTTTCACCGACGAGGATGAGCACAAGCTGCTGGGCGATGAGAACGACGAT
GAGCTACTGAAAAGTCCGGTTAGCACACCCACAACTGTGGCCATTCCGGA
CCTTCTAGCGGAAGAGAAGACGTCTTCGGCCCCAGATGCAGCTGCGCCGA
CCAAGAAAATAGTTCTGAAGCGAAATAATTCCCAGCAGTCGACGGGCACG
GTAGCCAGCACGGGGACAACTCCATCGAAGGAGAACGAGGCGCCCGCTGC
AGCTGCTAGTGACTCCACCGGCGAAACTCCTACCAAGAAGCATAAGCCGA
TTGTGGTCGGACCAAAGACGGAAGGAGAGAAGCCATCAGGCGACAAGAAA
CTTAACCAGCTGACTGCACAAGAGCGATTGGAACTGCGGGCCAAAAAGTT
TGGCATAACACCCCCCGCTGTGGCCAACACTGCAACCGCAGTGGCAGTGG
CCATCAATAAATCCTCTAGTGCCTCCATTACGGCCAACAAAGGTAACAAG
GAAACCGAGGAGCAGCAAAAGGAGGCACTCAAAAAACGTGCCGAGCGTTT
CGGATTCGTGGTGCCTGACAAAGCACCGACCTCAAAGGCCGATGATCGTC
TCCAGAAACGGAAGGAGCGATTTGGAGCAGGAGCAGTCTCAGCAGCTACC
ACCACGCCTACCACAACTGAATCCAAGGACGCCTGGTCAGAGAAGGCGCG
CGCTCGCTTGGAAAGATTCAAAACAGCCCCGTCCACAAATTAAAAGCTTT
CTAGACCAT
BS06079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8149-RA | 927 | CG8149-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8149-RA | 1156 | CG8149-RA | 70..996 | 17..943 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9504807..9505705 | 45..943 | 4495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:51:00 has no hits.
BS06079.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:23 Download gff for
BS06079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-RA | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:16 Download gff for
BS06079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-RA | 61..992 | 10..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:18 Download gff for
BS06079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-RA | 70..994 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:23 Download gff for
BS06079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-RA | 61..992 | 10..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:51 Download gff for
BS06079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8149-RA | 70..994 | 17..941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:51 Download gff for
BS06079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9504725..9504754 | 17..46 | 100 | -> | Plus |
| 3R | 9504809..9505703 | 47..941 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:18 Download gff for
BS06079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5330447..5330476 | 17..46 | 100 | -> | Plus |
| arm_3R | 5330531..5331425 | 47..941 | 100 | | Plus |
BS06079.pep Sequence
Translation from 16 to 942
> BS06079.pep
MPESDVTKMKVADLKRELKLRGLAVNGNKTELQDRLQTALLEGDLSLEDS
AIADAIDDDDVSFTDEDEHKLLGDENDDELLKSPVSTPTTVAIPDLLAEE
KTSSAPDAAAPTKKIVLKRNNSQQSTGTVASTGTTPSKENEAPAAAASDS
TGETPTKKHKPIVVGPKTEGEKPSGDKKLNQLTAQERLELRAKKFGITPP
AVANTATAVAVAINKSSSASITANKGNKETEEQQKEALKKRAERFGFVVP
DKAPTSKADDRLQKRKERFGAGAVSAATTTPTTTESKDAWSEKARARLER
FKTAPSTN*
BS06079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8149-PA | 308 | CG8149-PA | 1..308 | 1..308 | 1532 | 100 | Plus |
