Clone BS06083 Report

Search the DGRC for BS06083

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG9288-RA
Protein status:BS06083.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06083.3prime Sequence

675 bp (674 high quality bases) assembled on 2005-12-03

> BS06083.3prime
ATGGTCTAGAAAGCTTTCACGCCTGAATCTCCTTATTTTTGTTTTGAGCG
TGGTCCCCGGTGGACTCAATTTGAGGTAGACCTTCGTTTTTCGATTTTAG
GCGCTCCTCATACTGCTCCTGGGTTAAAAGACTCGCCTTGATTGCATCGC
AGTTTTCGATTTTGGGCAGAAGAATGGCGAAGTAGCCGGCTCCCTCGGGG
AGTTGCTCCAGAAGCTTTGGCTCCTCCACAATGGCGGTGTTCACCTCTAC
CAGCTTGCCCCGAATGCAGCTGGGCACCTTGTAAGTCCCTCCATTTGCTG
TGGTGAGCAGTGCCAAGGTGGACTCCGCCTGTAGGATCATTCCGCCCTTT
TTACCCTTTCCCTTGACCACATTCTGGCTGCGATCTACGTTCCCTATATC
AAAGTTGACCGATGAGATGCCTTGAGCTAGAGCAGGGTGCTCGGGAGCCA
GGCAAATCAGACAAATGCGATTGGAGTGGTAGAGCACTTGGTAGGGAACA
TCTCCCTTGAAGTAGTAATATCTGGTGAAAAAACGATCTACAACACTGGG
GTAATCCTCCTGGAAGCTATCTGTAATGGGAGCTACGAGCTTCCCGCAGA
TCTCCTGCTCCTCGTGCTCGAAGTAGAATGGCTCCAGTGGATCATCTGCT
TGTACTGACATGTCGACTGATAACT

BS06083.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-PA 645 CG9288-RA 1..645 661..17 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-RA 1117 CG9288-RA 346..990 661..17 3225 100 Minus
CG42375-RA 1117 CG42375-RA 346..990 661..17 3225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13780024..13780668 661..17 3225 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:32:29 has no hits.

BS06083.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:41 Download gff for BS06083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-PA 1..645 17..661 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:11 Download gff for BS06083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-PA 1..645 17..661 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:14 Download gff for BS06083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-RA 342..993 10..669 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:11 Download gff for BS06083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42375-RA 342..993 10..669 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:11 Download gff for BS06083.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13780020..13780671 10..669 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:14 Download gff for BS06083.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9605742..9606393 10..669 98   Minus

BS06083.5prime Sequence

675 bp (674 high quality bases) assembled on 2005-12-03

> BS06083.5prime
GAAGTTATCAGTCGACATGTCAGTACAAGCAGATGATCCACTGGAGCCAT
TCTACTTCGAGCACGAGGAGCAGGAGATCTGCGGGAAGCTCGTAGCTCCC
ATTACAGATAGCTTCCAGGAGGATTACCCCAGTGTTGTAGATCGTTTTTT
CACCAGATATTACTACTTCAAGGGAGATGTTCCCTACCAAGTGCTCTACC
ACTCCAATCGCATTTGTCTGATTTGCCTGGCTCCCGAGCACCCTGCTCTA
GCTCAAGGCATCTCATCGGTCAACTTTGATATAGGGAACGTAGATCGCAG
CCAGAATGTGGTCAAGGGAAAGGGTAAAAAGGGCGGAATGATCCTACAGG
CGGAGTCCACCTTGGCACTGCTCACCACAGCAAATGGAGGGACTTACAAG
GTGCCCAGCTGCATTCGGGGCAAGCTGGTAGAGGTGAACACCGCCATTGT
GGAGGAGCCAAAGCTTCTGGAGCAACTCCCCGAGGGAGCCGGCTACTTCG
CCATTCTTCTGCCCAAAATCGAAAACTGCGATGCAATCAAGGCGAGTCTT
TTAACCCAGGAGCAGTATGAGGAGCGCCTAAAATCGAAAAACGAAGGTCT
ACCTCAAATTGAGTCCACCGGGGACCACGCTCAAAACAAAAATAAGGAGA
TTCAGGCGTGAAAGCTTTCTAGACC

BS06083.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-PA 645 CG9288-RA 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-RA 1117 CG9288-RA 346..990 17..661 3225 100 Plus
CG42375-RA 1117 CG42375-RA 346..990 17..661 3225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13780024..13780668 17..661 3225 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:34:42 has no hits.

BS06083.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:42 Download gff for BS06083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-PA 1..645 17..661 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:12 Download gff for BS06083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-PA 1..645 17..661 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:09 Download gff for BS06083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-RA 342..993 9..668 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:21 Download gff for BS06083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42375-RA 342..993 9..668 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:21 Download gff for BS06083.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13780020..13780671 9..668 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:09 Download gff for BS06083.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9605742..9606393 9..668 98   Plus

BS06083.complete Sequence

677 bp (677 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635343

> BS06083.complete
GAAGTTATCAGTCGACATGTCAGTACAAGCAGATGATCCACTGGAGCCAT
TCTACTTCGAGCACGAGGAGCAGGAGATCTGCGGGAAGCTCGTAGCTCCC
ATTACAGATAGCTTCCAGGAGGATTACCCCAGTGTTGTAGATCGTTTTTT
CACCAGATATTACTACTTCAAGGGAGATGTTCCCTACCAAGTGCTCTACC
ACTCCAATCGCATTTGTCTGATTTGCCTGGCTCCCGAGCACCCTGCTCTA
GCTCAAGGCATCTCATCGGTCAACTTTGATATAGGGAACGTAGATCGCAG
CCAGAATGTGGTCAAGGGAAAGGGTAAAAAGGGCGGAATGATCCTACAGG
CGGAGTCCACCTTGGCACTGCTCACCACAGCAAATGGAGGGACTTACAAG
GTGCCCAGCTGCATTCGGGGCAAGCTGGTAGAGGTGAACACCGCCATTGT
GGAGGAGCCAAAGCTTCTGGAGCAACTCCCCGAGGGAGCCGGCTACTTCG
CCATTCTTCTGCCCAAAATCGAAAACTGCGATGCAATCAAGGCGAGTCTT
TTAACCCAGGAGCAGTATGAGGAGCGCCTAAAATCGAAAAACGAAGGTCT
ACCTCAAATTGAGTCCACCGGGGACCACGCTCAAAACAAAAATAAGGAGA
TTCAGGCGTGAAAGCTTTCTAGACCAT

BS06083.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-RA 645 CG9288-PA 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-RA 1117 CG9288-RA 346..990 17..661 3225 100 Plus
CG42375-RA 1117 CG42375-RA 346..990 17..661 3225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13780024..13780668 17..661 3225 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:45:36 has no hits.

BS06083.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:30 Download gff for BS06083.complete
Subject Subject Range Query Range Percent Splice Strand
CG9288-RA 1..645 17..661 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:14 Download gff for BS06083.complete
Subject Subject Range Query Range Percent Splice Strand
CG42375-RA 385..1036 9..668 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:48 Download gff for BS06083.complete
Subject Subject Range Query Range Percent Splice Strand
CG9288-RA 346..989 17..660 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:31 Download gff for BS06083.complete
Subject Subject Range Query Range Percent Splice Strand
CG9288-RA 385..1036 9..668 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:47 Download gff for BS06083.complete
Subject Subject Range Query Range Percent Splice Strand
CG42375-RA 346..989 17..660 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:47 Download gff for BS06083.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13780024..13780667 17..660 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:48 Download gff for BS06083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9605746..9606389 17..660 100   Plus

BS06083.pep Sequence

Translation from 16 to 660

> BS06083.pep
MSVQADDPLEPFYFEHEEQEICGKLVAPITDSFQEDYPSVVDRFFTRYYY
FKGDVPYQVLYHSNRICLICLAPEHPALAQGISSVNFDIGNVDRSQNVVK
GKGKKGGMILQAESTLALLTTANGGTYKVPSCIRGKLVEVNTAIVEEPKL
LEQLPEGAGYFAILLPKIENCDAIKASLLTQEQYEERLKSKNEGLPQIES
TGDHAQNKNKEIQA*

BS06083.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-PA 214 CG9288-PA 1..214 1..214 1114 100 Plus