Clone Sequence Records
BS06083.3prime Sequence
675 bp (674 high quality bases) assembled on 2005-12-03
> BS06083.3prime
ATGGTCTAGAAAGCTTTCACGCCTGAATCTCCTTATTTTTGTTTTGAGCG
TGGTCCCCGGTGGACTCAATTTGAGGTAGACCTTCGTTTTTCGATTTTAG
GCGCTCCTCATACTGCTCCTGGGTTAAAAGACTCGCCTTGATTGCATCGC
AGTTTTCGATTTTGGGCAGAAGAATGGCGAAGTAGCCGGCTCCCTCGGGG
AGTTGCTCCAGAAGCTTTGGCTCCTCCACAATGGCGGTGTTCACCTCTAC
CAGCTTGCCCCGAATGCAGCTGGGCACCTTGTAAGTCCCTCCATTTGCTG
TGGTGAGCAGTGCCAAGGTGGACTCCGCCTGTAGGATCATTCCGCCCTTT
TTACCCTTTCCCTTGACCACATTCTGGCTGCGATCTACGTTCCCTATATC
AAAGTTGACCGATGAGATGCCTTGAGCTAGAGCAGGGTGCTCGGGAGCCA
GGCAAATCAGACAAATGCGATTGGAGTGGTAGAGCACTTGGTAGGGAACA
TCTCCCTTGAAGTAGTAATATCTGGTGAAAAAACGATCTACAACACTGGG
GTAATCCTCCTGGAAGCTATCTGTAATGGGAGCTACGAGCTTCCCGCAGA
TCTCCTGCTCCTCGTGCTCGAAGTAGAATGGCTCCAGTGGATCATCTGCT
TGTACTGACATGTCGACTGATAACT
BS06083.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-PA | 645 | CG9288-RA | 1..645 | 661..17 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-RA | 1117 | CG9288-RA | 346..990 | 661..17 | 3225 | 100 | Minus |
CG42375-RA | 1117 | CG42375-RA | 346..990 | 661..17 | 3225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13780024..13780668 | 661..17 | 3225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:32:29 has no hits.
BS06083.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:41 Download gff for
BS06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-PA | 1..645 | 17..661 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:11 Download gff for
BS06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-PA | 1..645 | 17..661 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:14 Download gff for
BS06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-RA | 342..993 | 10..669 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:11 Download gff for
BS06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42375-RA | 342..993 | 10..669 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:11 Download gff for
BS06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13780020..13780671 | 10..669 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:14 Download gff for
BS06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9605742..9606393 | 10..669 | 98 | | Minus |
BS06083.5prime Sequence
675 bp (674 high quality bases) assembled on 2005-12-03
> BS06083.5prime
GAAGTTATCAGTCGACATGTCAGTACAAGCAGATGATCCACTGGAGCCAT
TCTACTTCGAGCACGAGGAGCAGGAGATCTGCGGGAAGCTCGTAGCTCCC
ATTACAGATAGCTTCCAGGAGGATTACCCCAGTGTTGTAGATCGTTTTTT
CACCAGATATTACTACTTCAAGGGAGATGTTCCCTACCAAGTGCTCTACC
ACTCCAATCGCATTTGTCTGATTTGCCTGGCTCCCGAGCACCCTGCTCTA
GCTCAAGGCATCTCATCGGTCAACTTTGATATAGGGAACGTAGATCGCAG
CCAGAATGTGGTCAAGGGAAAGGGTAAAAAGGGCGGAATGATCCTACAGG
CGGAGTCCACCTTGGCACTGCTCACCACAGCAAATGGAGGGACTTACAAG
GTGCCCAGCTGCATTCGGGGCAAGCTGGTAGAGGTGAACACCGCCATTGT
GGAGGAGCCAAAGCTTCTGGAGCAACTCCCCGAGGGAGCCGGCTACTTCG
CCATTCTTCTGCCCAAAATCGAAAACTGCGATGCAATCAAGGCGAGTCTT
TTAACCCAGGAGCAGTATGAGGAGCGCCTAAAATCGAAAAACGAAGGTCT
ACCTCAAATTGAGTCCACCGGGGACCACGCTCAAAACAAAAATAAGGAGA
TTCAGGCGTGAAAGCTTTCTAGACC
BS06083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-PA | 645 | CG9288-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-RA | 1117 | CG9288-RA | 346..990 | 17..661 | 3225 | 100 | Plus |
CG42375-RA | 1117 | CG42375-RA | 346..990 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13780024..13780668 | 17..661 | 3225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:34:42 has no hits.
BS06083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:42 Download gff for
BS06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-PA | 1..645 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:12 Download gff for
BS06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-PA | 1..645 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:09 Download gff for
BS06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-RA | 342..993 | 9..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:21 Download gff for
BS06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42375-RA | 342..993 | 9..668 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:21 Download gff for
BS06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13780020..13780671 | 9..668 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:09 Download gff for
BS06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9605742..9606393 | 9..668 | 98 | | Plus |
BS06083.complete Sequence
677 bp (677 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635343
> BS06083.complete
GAAGTTATCAGTCGACATGTCAGTACAAGCAGATGATCCACTGGAGCCAT
TCTACTTCGAGCACGAGGAGCAGGAGATCTGCGGGAAGCTCGTAGCTCCC
ATTACAGATAGCTTCCAGGAGGATTACCCCAGTGTTGTAGATCGTTTTTT
CACCAGATATTACTACTTCAAGGGAGATGTTCCCTACCAAGTGCTCTACC
ACTCCAATCGCATTTGTCTGATTTGCCTGGCTCCCGAGCACCCTGCTCTA
GCTCAAGGCATCTCATCGGTCAACTTTGATATAGGGAACGTAGATCGCAG
CCAGAATGTGGTCAAGGGAAAGGGTAAAAAGGGCGGAATGATCCTACAGG
CGGAGTCCACCTTGGCACTGCTCACCACAGCAAATGGAGGGACTTACAAG
GTGCCCAGCTGCATTCGGGGCAAGCTGGTAGAGGTGAACACCGCCATTGT
GGAGGAGCCAAAGCTTCTGGAGCAACTCCCCGAGGGAGCCGGCTACTTCG
CCATTCTTCTGCCCAAAATCGAAAACTGCGATGCAATCAAGGCGAGTCTT
TTAACCCAGGAGCAGTATGAGGAGCGCCTAAAATCGAAAAACGAAGGTCT
ACCTCAAATTGAGTCCACCGGGGACCACGCTCAAAACAAAAATAAGGAGA
TTCAGGCGTGAAAGCTTTCTAGACCAT
BS06083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-RA | 645 | CG9288-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-RA | 1117 | CG9288-RA | 346..990 | 17..661 | 3225 | 100 | Plus |
CG42375-RA | 1117 | CG42375-RA | 346..990 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13780024..13780668 | 17..661 | 3225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:45:36 has no hits.
BS06083.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:30 Download gff for
BS06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-RA | 1..645 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:14 Download gff for
BS06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42375-RA | 385..1036 | 9..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:48 Download gff for
BS06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-RA | 346..989 | 17..660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:31 Download gff for
BS06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-RA | 385..1036 | 9..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:47 Download gff for
BS06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42375-RA | 346..989 | 17..660 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:47 Download gff for
BS06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13780024..13780667 | 17..660 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:48 Download gff for
BS06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9605746..9606389 | 17..660 | 100 | | Plus |
BS06083.pep Sequence
Translation from 16 to 660
> BS06083.pep
MSVQADDPLEPFYFEHEEQEICGKLVAPITDSFQEDYPSVVDRFFTRYYY
FKGDVPYQVLYHSNRICLICLAPEHPALAQGISSVNFDIGNVDRSQNVVK
GKGKKGGMILQAESTLALLTTANGGTYKVPSCIRGKLVEVNTAIVEEPKL
LEQLPEGAGYFAILLPKIENCDAIKASLLTQEQYEERLKSKNEGLPQIES
TGDHAQNKNKEIQA*
BS06083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-PA | 214 | CG9288-PA | 1..214 | 1..214 | 1114 | 100 | Plus |