Clone BS06084 Report

Search the DGRC for BS06084

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG12253-RA
Protein status:BS06084.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06084.3prime Sequence

806 bp (782 high quality bases) assembled on 2005-12-03

> BS06084.3prime
ATGGTCTAGAAAGCTTTTAGCAAGCAAAATGGGTTTTAATGAATTGTCTT
CGATTGTTGTCATCTCCGGATTTTGGTGACCTTCCTATGGAATTGAAGAA
AGTGGAATTAAAGGGTGAAATGTTCTGTTCCGTATCAATGCTTGGATCGA
CCCACTCCATGGCCATGTTGTGGAGTATGGCCAACGCCGTAATCGTTTGC
TTTGCAGATCCATGGGAACCCTGGATTTCGGTGGCAAGGATACCGAAGCG
ACTCATCAGCAGATTGAGACACTTTCTAGCCGATGCGTAGGTGACCGCGT
GGGCGTGGTTATACAGCTCCTCGGATTGGTTCCTCGGGAATCGAACCGGT
GTGAACAGGGAGGAGGAGCAGCGCACCATTTCGTTGCCCAGCAAAATACG
ACCCCGGAACTCGTTCTGTTCGAATCGATCCTTTATTTTGGACAGACCGA
ACATCTCGGTGTCGGTGAGCATGGACTGCTCATCGATCAGTCGGATATCA
AGGTCCCTTATCTTATGAGCCGCATCGCAAACAATCTGAATGTGAAGTTC
CTCCTCCCGGCTGGTAAGGGCGGGCAAAAGCTCCTCTCCATCCAGATCAG
GGGCACAGTTTTCCGGTTGAAACCTCACAGTTGTCTGTAGTAAAGCACCA
ATGACTTGCGGCATATTGGCAATTGCTTGAAACGCCGAACCAGATCGCTC
CTTTTCCGATAGAGTAGCCGGCATTCGGATATACCTGGAAGCTTTCGATG
ATAGGACAGATGCCACGCGCCTAGTTATTTTTGCCAAAGTGCGTAAACTA
ACGCCA

BS06084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12253-PA 1137 CG12253-RA 348..1137 806..17 3950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12253-RA 1240 CG12253-RA 377..1166 806..17 3950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10988312..10988982 806..136 3355 100 Minus
2L 23513712 2L 10989048..10989167 136..17 600 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:44:20 has no hits.

BS06084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:43 Download gff for BS06084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12253-PA 349..1137 17..805 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:14 Download gff for BS06084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12253-PA 349..1137 17..805 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:28:19 Download gff for BS06084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 378..1166 17..805 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:01 Download gff for BS06084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 378..1166 17..805 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:01 Download gff for BS06084.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10988313..10988982 136..805 100 -> Minus
2L 10989049..10989167 17..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:28:19 Download gff for BS06084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10988313..10988982 136..805 100 -> Minus
arm_2L 10989049..10989167 17..135 100   Minus

BS06084.5prime Sequence

785 bp (780 high quality bases) assembled on 2005-12-03

> BS06084.5prime
GAAGTTATCAGTCGACATGGAAGATATACAAAGATTTCAAAGGTCTCTAA
AAGACTTTGATTATTTCAAAGACTTTCAATGTTTTCTGAATATCAAACAC
AATTCTCGAGCGCGGGCAACGCATATAAAGAAAAGGAACCCAAGATTTAA
TCCATTGACCGATCTAAATGAGCATAAATTTCGACTAAAGTACCGATACA
CTAAGGAAAACCTTCGCAGAATTATTGAAATTGTACGGGATGACTTGGAA
ATTGAATATTTTGAGCCGTTAAAGAGGGAGCAAGTTCCAATAGATTTGCA
GATTCTATCCGCTATTCGCTTGTGGGGCGGCACAGAGCACCCCAAATTAA
CTGCAATGGCCCATGGCGTTAGTTTACGCACTTTGGCAAAAATAACTAGG
CGCGTGGCATCTGTCCTATCATCGAAAGCTTCCAGGTATATCCGAATGCC
GGCTACTCTATCGGAAAAGGAGCGATCTGGTTCGGCGTTTCAAGCAATTG
CCAATATGCCGCAAGTCATTGGTGCTTTACTACAGACAACTGTGAGGTTT
CAACCGGAAAACTGTGCCCCTGATCTGGATGGAGAGGAGCTTTTGCCCGC
CCTTACCAGCCGGGAGGAGGAACTTCACATTCAGATTGTTTGCGATGCGG
CTCATAAGATAAGGGACCTTGATATCCGACTGATCGATGAGCAGTCCATG
CTCACCGACACCGAGATGTTCGGTCTGTCCAAATAAAGGATCGATTCGAA
CAGAACGAGTTCCGGGGTCGTATTTTGCTGGGCAA

BS06084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12253-PA 1137 CG12253-RA 1..717 17..733 3585 100 Plus
CG12253-PA 1137 CG12253-RA 716..770 731..785 275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12253-RA 1240 CG12253-RA 30..799 17..785 3825 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10988284..10988734 336..785 2205 99.8 Plus
2L 23513712 2L 10987835..10988155 17..337 1605 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:02:13 has no hits.

BS06084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:44 Download gff for BS06084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12253-PA 1..768 17..783 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:15 Download gff for BS06084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12253-PA 1..768 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:46:42 Download gff for BS06084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 23..797 10..783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:59 Download gff for BS06084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 23..797 10..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:59 Download gff for BS06084.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10987828..10988155 10..337 99 -> Plus
2L 10988286..10988732 338..783 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:46:42 Download gff for BS06084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10987828..10988155 10..337 99 -> Plus
arm_2L 10988286..10988732 338..783 99   Plus

BS06084.complete Sequence

1169 bp (1169 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635344

> BS06084.complete
GAAGTTATCAGTCGACATGGAAGATATACAAAGATTTCAAAGGTCTCTAA
AAGACTTTGATTATTTCAAAGACTTTCAATGTTTTCTGAATATCAAACAC
AATTCTCGAGCGCGGGCAACGCATATAAAGAAAAGGAACCCAAGATTTAA
TCCATTGACCGATCTAAATGAGCATAAATTTCGACTAAAGTACCGATACA
CTAAGGAAAACCTTCGCAGAATTATTGAAATTGTACGGGATGACTTGGAA
ATTGAATATTTTGAGCCGTTAAAGAGGGAGCAAGTTCCAATAGATTTGCA
GATTCTATCCGCTATTCGCTTGTGGGGCGGCACAGAGCACCCCAAATTAA
CTGCAATGGCCCATGGCGTTAGTTTACGCACTTTGGCAAAAATAACTAGG
CGCGTGGCATCTGTCCTATCATCGAAAGCTTCCAGGTATATCCGAATGCC
GGCTACTCTATCGGAAAAGGAGCGATCTGGTTCGGCGTTTCAAGCAATTG
CCAATATGCCGCAAGTCATTGGTGCTTTACTACAGACAACTGTGAGGTTT
CAACCGGAAAACTGTGCCCCTGATCTGGATGGAGAGGAGCTTTTGCCCGC
CCTTACCAGCCGGGAGGAGGAACTTCACATTCAGATTGTTTGCGATGCGG
CTCATAAGATAAGGGACCTTGATATCCGACTGATCGATGAGCAGTCCATG
CTCACCGACACCGAGATGTTCGGTCTGTCCAAAATAAAGGATCGATTCGA
ACAGAACGAGTTCCGGGGTCGTATTTTGCTGGGCAACGAAATGGTGCGCT
GCTCCTCCTCCCTGTTCACACCGGTTCGATTCCCGAGGAACCAATCCGAG
GAGCTGTATAACCACGCCCACGCGGTCACCTACGCATCGGCTAGAAAGTG
TCTCAATCTGCTGATGAGTCGCTTCGGTATCCTTGCCACCGAAATCCAGG
GTTCCCATGGATCTGCAAAGCAAACGATTACGGCGTTGGCCATACTCCAC
AACATGGCCATGGAGTGGGTCGATCCAAGCATTGATACGGAACAGAACAT
TTCACCCTTTAATTCCACTTTCTTCAATTCCATAGGAAGGTCACCAAAAT
CCGGAGATGACAACAATCGAAGACAATTCATTAAAACCCATTTTGCTTGC
TAAAAGCTTTCTAGACCAT

BS06084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12253-RA 1137 CG12253-PA 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12253-RA 1240 CG12253-RA 30..1166 17..1153 5685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10988284..10988982 336..1034 3495 100 Plus
2L 23513712 2L 10987835..10988155 17..337 1605 100 Plus
2L 23513712 2L 10989048..10989167 1034..1153 600 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:33:07 has no hits.

BS06084.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:24 Download gff for BS06084.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:18 Download gff for BS06084.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 12..1155 10..1153 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:40 Download gff for BS06084.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 30..1164 17..1151 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:24 Download gff for BS06084.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 12..1155 10..1153 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:51 Download gff for BS06084.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 30..1164 17..1151 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:51 Download gff for BS06084.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10987835..10988155 17..337 100 -> Plus
2L 10988286..10988982 338..1034 100 -> Plus
2L 10989049..10989165 1035..1151 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:40 Download gff for BS06084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10987835..10988155 17..337 100 -> Plus
arm_2L 10988286..10988982 338..1034 100 -> Plus
arm_2L 10989049..10989165 1035..1151 100   Plus

BS06084.pep Sequence

Translation from 16 to 1152

> BS06084.pep
MEDIQRFQRSLKDFDYFKDFQCFLNIKHNSRARATHIKKRNPRFNPLTDL
NEHKFRLKYRYTKENLRRIIEIVRDDLEIEYFEPLKREQVPIDLQILSAI
RLWGGTEHPKLTAMAHGVSLRTLAKITRRVASVLSSKASRYIRMPATLSE
KERSGSAFQAIANMPQVIGALLQTTVRFQPENCAPDLDGEELLPALTSRE
EELHIQIVCDAAHKIRDLDIRLIDEQSMLTDTEMFGLSKIKDRFEQNEFR
GRILLGNEMVRCSSSLFTPVRFPRNQSEELYNHAHAVTYASARKCLNLLM
SRFGILATEIQGSHGSAKQTITALAILHNMAMEWVDPSIDTEQNISPFNS
TFFNSIGRSPKSGDDNNRRQFIKTHFAC*

BS06084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12253-PA 378 CG12253-PA 1..378 1..378 1947 100 Plus