Clone Sequence Records
BS06084.3prime Sequence
806 bp (782 high quality bases) assembled on 2005-12-03
> BS06084.3prime
ATGGTCTAGAAAGCTTTTAGCAAGCAAAATGGGTTTTAATGAATTGTCTT
CGATTGTTGTCATCTCCGGATTTTGGTGACCTTCCTATGGAATTGAAGAA
AGTGGAATTAAAGGGTGAAATGTTCTGTTCCGTATCAATGCTTGGATCGA
CCCACTCCATGGCCATGTTGTGGAGTATGGCCAACGCCGTAATCGTTTGC
TTTGCAGATCCATGGGAACCCTGGATTTCGGTGGCAAGGATACCGAAGCG
ACTCATCAGCAGATTGAGACACTTTCTAGCCGATGCGTAGGTGACCGCGT
GGGCGTGGTTATACAGCTCCTCGGATTGGTTCCTCGGGAATCGAACCGGT
GTGAACAGGGAGGAGGAGCAGCGCACCATTTCGTTGCCCAGCAAAATACG
ACCCCGGAACTCGTTCTGTTCGAATCGATCCTTTATTTTGGACAGACCGA
ACATCTCGGTGTCGGTGAGCATGGACTGCTCATCGATCAGTCGGATATCA
AGGTCCCTTATCTTATGAGCCGCATCGCAAACAATCTGAATGTGAAGTTC
CTCCTCCCGGCTGGTAAGGGCGGGCAAAAGCTCCTCTCCATCCAGATCAG
GGGCACAGTTTTCCGGTTGAAACCTCACAGTTGTCTGTAGTAAAGCACCA
ATGACTTGCGGCATATTGGCAATTGCTTGAAACGCCGAACCAGATCGCTC
CTTTTCCGATAGAGTAGCCGGCATTCGGATATACCTGGAAGCTTTCGATG
ATAGGACAGATGCCACGCGCCTAGTTATTTTTGCCAAAGTGCGTAAACTA
ACGCCA
BS06084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12253-PA | 1137 | CG12253-RA | 348..1137 | 806..17 | 3950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12253-RA | 1240 | CG12253-RA | 377..1166 | 806..17 | 3950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10988312..10988982 | 806..136 | 3355 | 100 | Minus |
2L | 23513712 | 2L | 10989048..10989167 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:44:20 has no hits.
BS06084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:43 Download gff for
BS06084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-PA | 349..1137 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:14 Download gff for
BS06084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-PA | 349..1137 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:28:19 Download gff for
BS06084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-RA | 378..1166 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:01 Download gff for
BS06084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-RA | 378..1166 | 17..805 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:01 Download gff for
BS06084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10988313..10988982 | 136..805 | 100 | -> | Minus |
2L | 10989049..10989167 | 17..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:28:19 Download gff for
BS06084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10988313..10988982 | 136..805 | 100 | -> | Minus |
arm_2L | 10989049..10989167 | 17..135 | 100 | | Minus |
BS06084.5prime Sequence
785 bp (780 high quality bases) assembled on 2005-12-03
> BS06084.5prime
GAAGTTATCAGTCGACATGGAAGATATACAAAGATTTCAAAGGTCTCTAA
AAGACTTTGATTATTTCAAAGACTTTCAATGTTTTCTGAATATCAAACAC
AATTCTCGAGCGCGGGCAACGCATATAAAGAAAAGGAACCCAAGATTTAA
TCCATTGACCGATCTAAATGAGCATAAATTTCGACTAAAGTACCGATACA
CTAAGGAAAACCTTCGCAGAATTATTGAAATTGTACGGGATGACTTGGAA
ATTGAATATTTTGAGCCGTTAAAGAGGGAGCAAGTTCCAATAGATTTGCA
GATTCTATCCGCTATTCGCTTGTGGGGCGGCACAGAGCACCCCAAATTAA
CTGCAATGGCCCATGGCGTTAGTTTACGCACTTTGGCAAAAATAACTAGG
CGCGTGGCATCTGTCCTATCATCGAAAGCTTCCAGGTATATCCGAATGCC
GGCTACTCTATCGGAAAAGGAGCGATCTGGTTCGGCGTTTCAAGCAATTG
CCAATATGCCGCAAGTCATTGGTGCTTTACTACAGACAACTGTGAGGTTT
CAACCGGAAAACTGTGCCCCTGATCTGGATGGAGAGGAGCTTTTGCCCGC
CCTTACCAGCCGGGAGGAGGAACTTCACATTCAGATTGTTTGCGATGCGG
CTCATAAGATAAGGGACCTTGATATCCGACTGATCGATGAGCAGTCCATG
CTCACCGACACCGAGATGTTCGGTCTGTCCAAATAAAGGATCGATTCGAA
CAGAACGAGTTCCGGGGTCGTATTTTGCTGGGCAA
BS06084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12253-PA | 1137 | CG12253-RA | 1..717 | 17..733 | 3585 | 100 | Plus |
CG12253-PA | 1137 | CG12253-RA | 716..770 | 731..785 | 275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12253-RA | 1240 | CG12253-RA | 30..799 | 17..785 | 3825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10988284..10988734 | 336..785 | 2205 | 99.8 | Plus |
2L | 23513712 | 2L | 10987835..10988155 | 17..337 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:02:13 has no hits.
BS06084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:44 Download gff for
BS06084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-PA | 1..768 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:15 Download gff for
BS06084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-PA | 1..768 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:46:42 Download gff for
BS06084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-RA | 23..797 | 10..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:59 Download gff for
BS06084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-RA | 23..797 | 10..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:59 Download gff for
BS06084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10987828..10988155 | 10..337 | 99 | -> | Plus |
2L | 10988286..10988732 | 338..783 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:46:42 Download gff for
BS06084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10987828..10988155 | 10..337 | 99 | -> | Plus |
arm_2L | 10988286..10988732 | 338..783 | 99 | | Plus |
BS06084.complete Sequence
1169 bp (1169 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635344
> BS06084.complete
GAAGTTATCAGTCGACATGGAAGATATACAAAGATTTCAAAGGTCTCTAA
AAGACTTTGATTATTTCAAAGACTTTCAATGTTTTCTGAATATCAAACAC
AATTCTCGAGCGCGGGCAACGCATATAAAGAAAAGGAACCCAAGATTTAA
TCCATTGACCGATCTAAATGAGCATAAATTTCGACTAAAGTACCGATACA
CTAAGGAAAACCTTCGCAGAATTATTGAAATTGTACGGGATGACTTGGAA
ATTGAATATTTTGAGCCGTTAAAGAGGGAGCAAGTTCCAATAGATTTGCA
GATTCTATCCGCTATTCGCTTGTGGGGCGGCACAGAGCACCCCAAATTAA
CTGCAATGGCCCATGGCGTTAGTTTACGCACTTTGGCAAAAATAACTAGG
CGCGTGGCATCTGTCCTATCATCGAAAGCTTCCAGGTATATCCGAATGCC
GGCTACTCTATCGGAAAAGGAGCGATCTGGTTCGGCGTTTCAAGCAATTG
CCAATATGCCGCAAGTCATTGGTGCTTTACTACAGACAACTGTGAGGTTT
CAACCGGAAAACTGTGCCCCTGATCTGGATGGAGAGGAGCTTTTGCCCGC
CCTTACCAGCCGGGAGGAGGAACTTCACATTCAGATTGTTTGCGATGCGG
CTCATAAGATAAGGGACCTTGATATCCGACTGATCGATGAGCAGTCCATG
CTCACCGACACCGAGATGTTCGGTCTGTCCAAAATAAAGGATCGATTCGA
ACAGAACGAGTTCCGGGGTCGTATTTTGCTGGGCAACGAAATGGTGCGCT
GCTCCTCCTCCCTGTTCACACCGGTTCGATTCCCGAGGAACCAATCCGAG
GAGCTGTATAACCACGCCCACGCGGTCACCTACGCATCGGCTAGAAAGTG
TCTCAATCTGCTGATGAGTCGCTTCGGTATCCTTGCCACCGAAATCCAGG
GTTCCCATGGATCTGCAAAGCAAACGATTACGGCGTTGGCCATACTCCAC
AACATGGCCATGGAGTGGGTCGATCCAAGCATTGATACGGAACAGAACAT
TTCACCCTTTAATTCCACTTTCTTCAATTCCATAGGAAGGTCACCAAAAT
CCGGAGATGACAACAATCGAAGACAATTCATTAAAACCCATTTTGCTTGC
TAAAAGCTTTCTAGACCAT
BS06084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12253-RA | 1137 | CG12253-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12253-RA | 1240 | CG12253-RA | 30..1166 | 17..1153 | 5685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10988284..10988982 | 336..1034 | 3495 | 100 | Plus |
2L | 23513712 | 2L | 10987835..10988155 | 17..337 | 1605 | 100 | Plus |
2L | 23513712 | 2L | 10989048..10989167 | 1034..1153 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:33:07 has no hits.
BS06084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:24 Download gff for
BS06084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-RA | 1..1137 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:18 Download gff for
BS06084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-RA | 12..1155 | 10..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:40 Download gff for
BS06084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-RA | 30..1164 | 17..1151 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:24 Download gff for
BS06084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-RA | 12..1155 | 10..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:51 Download gff for
BS06084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12253-RA | 30..1164 | 17..1151 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:51 Download gff for
BS06084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10987835..10988155 | 17..337 | 100 | -> | Plus |
2L | 10988286..10988982 | 338..1034 | 100 | -> | Plus |
2L | 10989049..10989165 | 1035..1151 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:40 Download gff for
BS06084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10987835..10988155 | 17..337 | 100 | -> | Plus |
arm_2L | 10988286..10988982 | 338..1034 | 100 | -> | Plus |
arm_2L | 10989049..10989165 | 1035..1151 | 100 | | Plus |
BS06084.pep Sequence
Translation from 16 to 1152
> BS06084.pep
MEDIQRFQRSLKDFDYFKDFQCFLNIKHNSRARATHIKKRNPRFNPLTDL
NEHKFRLKYRYTKENLRRIIEIVRDDLEIEYFEPLKREQVPIDLQILSAI
RLWGGTEHPKLTAMAHGVSLRTLAKITRRVASVLSSKASRYIRMPATLSE
KERSGSAFQAIANMPQVIGALLQTTVRFQPENCAPDLDGEELLPALTSRE
EELHIQIVCDAAHKIRDLDIRLIDEQSMLTDTEMFGLSKIKDRFEQNEFR
GRILLGNEMVRCSSSLFTPVRFPRNQSEELYNHAHAVTYASARKCLNLLM
SRFGILATEIQGSHGSAKQTITALAILHNMAMEWVDPSIDTEQNISPFNS
TFFNSIGRSPKSGDDNNRRQFIKTHFAC*
BS06084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12253-PA | 378 | CG12253-PA | 1..378 | 1..378 | 1947 | 100 | Plus |