Clone BS06086 Report

Search the DGRC for BS06086

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL4-RA
Protein status:BS06086.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06086.3prime Sequence

858 bp (765 high quality bases) assembled on 2005-12-03

> BS06086.3prime
ATGGTCTAGAAAGCTTCTAGACTTGATCCAGCTTAAACTTGCCGCCCTTG
CTGGCGGCGTCGTTTCGATTAAGTTGGTAGAGCAGGCGCTGCTCCAGATG
TTTCACTGCAGCCACTGTCAGCACCAAAGTATCGTGCTTCAGCATAGAAT
AGACGTTCAAGCCAAAGGTTGGCATCAGGTTGACATAGCCCAGATCATCG
CTAGCCTGGCAAATATTGGCGGGGAACATATGGTCTTCGTCTACAATCAA
AACAGAAGGTCCCCAATTCCGTTCGGCGATTAAATCCTTAAGGAACTCTG
CATCTCCGGTGGGTATGTCCACATTATCGATGATGTGCAGATCATCCTGG
GCCAGCTTAACACTCAGCGTGGAGGTCAATCCTAAAACCCTCTTATAGAA
GGGCAGCATGTAAAAATGGGTCGTAGGCGACCTGGGTCCGTGCACTACGC
CGCCGCCCTTCAGCATGGGCGAACGGAGGGAACCGTGGCGGGCACGACCA
CCTCCCTTTTGGGGCCACGGCTTCCGACCACCACCGCGCACCTCCGCTCG
AGTTTTGGTGTGCGCCATGCTTACATAACGATACTTGCTCTGCCACTCCA
CATTCTCCTGTATGATGTCCACGCGCGGCTGGGCGGCAAAGACATCCGGA
TGCAGTTCAATCAGGCCAACCTTTCGCTCCGCCACAGCATCCGTGTTCTC
AATCCATGCCTGGCGCGCCGTGTTCCTGCTCACCGGCAAGCAATCTGTGT
AATCTTGCGGCAGAATAAAGGGTGATCTTGTGGCCGGAGGTGCGCCCACT
GTCGCAGCGGCTTCGGTCACCACATTGCCGTGGTTGCCGCTGCCGCTGAA
AGTCCTTG

BS06086.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5818-PA 891 mRpL4-RA 50..891 858..17 4160 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL4-RA 1012 CG5818-RA 100..944 858..14 4195 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16328412..16329033 237..858 3080 99.7 Plus
2L 23513712 2L 16328127..16328349 14..236 1115 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:39:22 has no hits.

BS06086.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:48 Download gff for BS06086.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL4-PA 50..891 17..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:19 Download gff for BS06086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5818-PA 50..891 17..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:58 Download gff for BS06086.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 100..950 5..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:02 Download gff for BS06086.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 100..950 5..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:02 Download gff for BS06086.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16328121..16328349 5..236 98 <- Plus
2L 16328412..16329033 237..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:58 Download gff for BS06086.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16328121..16328349 5..236 98 <- Plus
arm_2L 16328412..16329033 237..858 99   Plus

BS06086.5prime Sequence

834 bp (818 high quality bases) assembled on 2005-12-03

> BS06086.5prime
GAAGTTATCAGTCGACATGTTGAACAATATTTTAAAAACATCCAGGCAGG
TGCTTTATCCCGTAGCAAGGACTTTCAGCCGCAGCGGCAACCACGGCAAT
GTGGTGACCGAAGCCGCTGCGACAGTGGGCGCACCTCCGGCCACAAGATC
ACCCCTTATTCTGCCGCAAGATTACACAGATTGCTTGCCGGTGAGCAGGA
ACACGGCGCGCCAGGCATGGATTGAGAACACGGATGCTGTGGCGGAGCGA
AAGGTTGGCCTGATTGAACTGCATCCGGATGTCTTTGCCGCCCAGCCGCG
CGTGGACATCATACAGGAGAATGTGGAGTGGCAGAGCAAGTATCGTTATG
TAAGCATGGCGCACACCAAAACTCGAGCGGAGGTGCGCGGTGGTGGTCGG
AAGCCGTGGCCCCAAAAGGGAGGTGGTCGTGCCCGCCACGGTTCCCTCCG
TTCGCCCATGCTGAAGGGCGGCGGCGTAGTGCACGGACCCAGGTCGCCTA
CGACCCATTTTTACATGCTGCCCTTCTATAAGAGGGTTTTAGGATTGACC
TCCACGCTGAGTGTTAAGCTGGCCCAGGATGATCTGCACATCATCGATAA
TGTGGACATACCCACCGGAGATGCAGAGTTCCTTAAGGATTTAATCGCCG
AACGGAATTGGGGACCTTCTGTTTTGATTGTAGACGAAGACCATATGTTC
CCCGCCAATATTTGCCAGGCTAGCGATGATCTGGGCTATGTCAACCTGAT
GCCAACCTTTGGCTTGAACGTCTATTCTATGCTGAAGCACGATACTTTGG
TGCTGACAGTGGCTGCAGTGAAACATCTGGAGCA

BS06086.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5818-PA 891 mRpL4-RA 1..818 17..834 4090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL4-RA 1012 CG5818-RA 51..868 17..834 4090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16328412..16329082 687..17 3355 100 Minus
2L 23513712 2L 16328203..16328349 834..688 735 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:22:00 has no hits.

BS06086.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:49 Download gff for BS06086.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL4-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:21 Download gff for BS06086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5818-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:33:16 Download gff for BS06086.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 45..867 10..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:01 Download gff for BS06086.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 45..867 10..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:01 Download gff for BS06086.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16328204..16328349 688..833 100 <- Minus
2L 16328412..16329088 10..687 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:33:16 Download gff for BS06086.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16328204..16328349 688..833 100 <- Minus
arm_2L 16328412..16329088 10..687 99   Minus

BS06086.complete Sequence

923 bp (923 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635345

> BS06086.complete
GAAGTTATCAGTCGACATGTTGAACAATATTTTAAAAACATCCAGGCAGG
TGCTTTATCCCGTAGCAAGGACTTTCAGCCGCAGCGGCAACCACGGCAAT
GTGGTGACCGAAGCCGCTGCGACAGTGGGCGCACCTCCGGCCACAAGATC
ACCCCTTATTCTGCCGCAAGATTACACAGATTGCTTGCCGGTGAGCAGGA
ACACGGCGCGCCAGGCATGGATTGAGAACACGGATGCTGTGGCGGAGCGA
AAGGTTGGCCTGATTGAACTGCATCCGGATGTCTTTGCCGCCCAGCCGCG
CGTGGACATCATACAGGAGAATGTGGAGTGGCAGAGCAAGTATCGTTATG
TAAGCATGGCGCACACCAAAACTCGAGCGGAGGTGCGCGGTGGTGGTCGG
AAGCCGTGGCCCCAAAAGGGAGGTGGTCGTGCCCGCCACGGTTCCCTCCG
TTCGCCCATGCTGAAGGGCGGCGGCGTAGTGCACGGACCCAGGTCGCCTA
CGACCCATTTTTACATGCTGCCCTTCTATAAGAGGGTTTTAGGATTGACC
TCCACGCTGAGTGTTAAGCTGGCCCAGGATGATCTGCACATCATCGATAA
TGTGGACATACCCACCGGAGATGCAGAGTTCCTTAAGGATTTAATCGCCG
AACGGAATTGGGGACCTTCTGTTTTGATTGTAGACGAAGACCATATGTTC
CCCGCCAATATTTGCCAGGCTAGCGATGATCTGGGCTATGTCAACCTGAT
GCCAACCTTTGGCTTGAACGTCTATTCTATGCTGAAGCACGATACTTTGG
TGCTGACAGTGGCTGCAGTGAAACATCTGGAGCAGCGCCTGCTCTACCAA
CTTAATCGAAACGACGCCGCCAGCAAGGGCGGCAAGTTTAAGCTGGATCA
AGTCTAGAAGCTTTCTAGACCAT

BS06086.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL4-RA 891 CG5818-PA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL4-RA 1012 CG5818-RA 51..944 17..910 4470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16328412..16329082 687..17 3355 100 Minus
2L 23513712 2L 16328127..16328349 910..688 1115 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:48:26 has no hits.

BS06086.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:25 Download gff for BS06086.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:20 Download gff for BS06086.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 41..946 10..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:27 Download gff for BS06086.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 56..941 22..907 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:25 Download gff for BS06086.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 41..946 10..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:05 Download gff for BS06086.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 56..941 22..907 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:05 Download gff for BS06086.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16328130..16328349 688..907 100 <- Minus
2L 16328412..16329077 22..687 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:27 Download gff for BS06086.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16328130..16328349 688..907 100 <- Minus
arm_2L 16328412..16329077 22..687 100   Minus

BS06086.pep Sequence

Translation from 16 to 906

> BS06086.pep
MLNNILKTSRQVLYPVARTFSRSGNHGNVVTEAAATVGAPPATRSPLILP
QDYTDCLPVSRNTARQAWIENTDAVAERKVGLIELHPDVFAAQPRVDIIQ
ENVEWQSKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRARHGSLRSPMLK
GGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIDNVDIPT
GDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGL
NVYSMLKHDTLVLTVAAVKHLEQRLLYQLNRNDAASKGGKFKLDQV*

BS06086.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL4-PA 296 CG5818-PA 1..296 1..296 1550 100 Plus