Clone Sequence Records
BS06086.3prime Sequence
858 bp (765 high quality bases) assembled on 2005-12-03
> BS06086.3prime
ATGGTCTAGAAAGCTTCTAGACTTGATCCAGCTTAAACTTGCCGCCCTTG
CTGGCGGCGTCGTTTCGATTAAGTTGGTAGAGCAGGCGCTGCTCCAGATG
TTTCACTGCAGCCACTGTCAGCACCAAAGTATCGTGCTTCAGCATAGAAT
AGACGTTCAAGCCAAAGGTTGGCATCAGGTTGACATAGCCCAGATCATCG
CTAGCCTGGCAAATATTGGCGGGGAACATATGGTCTTCGTCTACAATCAA
AACAGAAGGTCCCCAATTCCGTTCGGCGATTAAATCCTTAAGGAACTCTG
CATCTCCGGTGGGTATGTCCACATTATCGATGATGTGCAGATCATCCTGG
GCCAGCTTAACACTCAGCGTGGAGGTCAATCCTAAAACCCTCTTATAGAA
GGGCAGCATGTAAAAATGGGTCGTAGGCGACCTGGGTCCGTGCACTACGC
CGCCGCCCTTCAGCATGGGCGAACGGAGGGAACCGTGGCGGGCACGACCA
CCTCCCTTTTGGGGCCACGGCTTCCGACCACCACCGCGCACCTCCGCTCG
AGTTTTGGTGTGCGCCATGCTTACATAACGATACTTGCTCTGCCACTCCA
CATTCTCCTGTATGATGTCCACGCGCGGCTGGGCGGCAAAGACATCCGGA
TGCAGTTCAATCAGGCCAACCTTTCGCTCCGCCACAGCATCCGTGTTCTC
AATCCATGCCTGGCGCGCCGTGTTCCTGCTCACCGGCAAGCAATCTGTGT
AATCTTGCGGCAGAATAAAGGGTGATCTTGTGGCCGGAGGTGCGCCCACT
GTCGCAGCGGCTTCGGTCACCACATTGCCGTGGTTGCCGCTGCCGCTGAA
AGTCCTTG
BS06086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5818-PA | 891 | mRpL4-RA | 50..891 | 858..17 | 4160 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL4-RA | 1012 | CG5818-RA | 100..944 | 858..14 | 4195 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16328412..16329033 | 237..858 | 3080 | 99.7 | Plus |
2L | 23513712 | 2L | 16328127..16328349 | 14..236 | 1115 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:39:22 has no hits.
BS06086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:48 Download gff for
BS06086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL4-PA | 50..891 | 17..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:19 Download gff for
BS06086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5818-PA | 50..891 | 17..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:58 Download gff for
BS06086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL4-RA | 100..950 | 5..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:02 Download gff for
BS06086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL4-RA | 100..950 | 5..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:02 Download gff for
BS06086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16328121..16328349 | 5..236 | 98 | <- | Plus |
2L | 16328412..16329033 | 237..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:58 Download gff for
BS06086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16328121..16328349 | 5..236 | 98 | <- | Plus |
arm_2L | 16328412..16329033 | 237..858 | 99 | | Plus |
BS06086.5prime Sequence
834 bp (818 high quality bases) assembled on 2005-12-03
> BS06086.5prime
GAAGTTATCAGTCGACATGTTGAACAATATTTTAAAAACATCCAGGCAGG
TGCTTTATCCCGTAGCAAGGACTTTCAGCCGCAGCGGCAACCACGGCAAT
GTGGTGACCGAAGCCGCTGCGACAGTGGGCGCACCTCCGGCCACAAGATC
ACCCCTTATTCTGCCGCAAGATTACACAGATTGCTTGCCGGTGAGCAGGA
ACACGGCGCGCCAGGCATGGATTGAGAACACGGATGCTGTGGCGGAGCGA
AAGGTTGGCCTGATTGAACTGCATCCGGATGTCTTTGCCGCCCAGCCGCG
CGTGGACATCATACAGGAGAATGTGGAGTGGCAGAGCAAGTATCGTTATG
TAAGCATGGCGCACACCAAAACTCGAGCGGAGGTGCGCGGTGGTGGTCGG
AAGCCGTGGCCCCAAAAGGGAGGTGGTCGTGCCCGCCACGGTTCCCTCCG
TTCGCCCATGCTGAAGGGCGGCGGCGTAGTGCACGGACCCAGGTCGCCTA
CGACCCATTTTTACATGCTGCCCTTCTATAAGAGGGTTTTAGGATTGACC
TCCACGCTGAGTGTTAAGCTGGCCCAGGATGATCTGCACATCATCGATAA
TGTGGACATACCCACCGGAGATGCAGAGTTCCTTAAGGATTTAATCGCCG
AACGGAATTGGGGACCTTCTGTTTTGATTGTAGACGAAGACCATATGTTC
CCCGCCAATATTTGCCAGGCTAGCGATGATCTGGGCTATGTCAACCTGAT
GCCAACCTTTGGCTTGAACGTCTATTCTATGCTGAAGCACGATACTTTGG
TGCTGACAGTGGCTGCAGTGAAACATCTGGAGCA
BS06086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5818-PA | 891 | mRpL4-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL4-RA | 1012 | CG5818-RA | 51..868 | 17..834 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16328412..16329082 | 687..17 | 3355 | 100 | Minus |
2L | 23513712 | 2L | 16328203..16328349 | 834..688 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:22:00 has no hits.
BS06086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:49 Download gff for
BS06086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL4-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:21 Download gff for
BS06086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5818-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:33:16 Download gff for
BS06086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL4-RA | 45..867 | 10..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:01 Download gff for
BS06086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL4-RA | 45..867 | 10..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:01 Download gff for
BS06086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16328204..16328349 | 688..833 | 100 | <- | Minus |
2L | 16328412..16329088 | 10..687 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:33:16 Download gff for
BS06086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16328204..16328349 | 688..833 | 100 | <- | Minus |
arm_2L | 16328412..16329088 | 10..687 | 99 | | Minus |
BS06086.complete Sequence
923 bp (923 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635345
> BS06086.complete
GAAGTTATCAGTCGACATGTTGAACAATATTTTAAAAACATCCAGGCAGG
TGCTTTATCCCGTAGCAAGGACTTTCAGCCGCAGCGGCAACCACGGCAAT
GTGGTGACCGAAGCCGCTGCGACAGTGGGCGCACCTCCGGCCACAAGATC
ACCCCTTATTCTGCCGCAAGATTACACAGATTGCTTGCCGGTGAGCAGGA
ACACGGCGCGCCAGGCATGGATTGAGAACACGGATGCTGTGGCGGAGCGA
AAGGTTGGCCTGATTGAACTGCATCCGGATGTCTTTGCCGCCCAGCCGCG
CGTGGACATCATACAGGAGAATGTGGAGTGGCAGAGCAAGTATCGTTATG
TAAGCATGGCGCACACCAAAACTCGAGCGGAGGTGCGCGGTGGTGGTCGG
AAGCCGTGGCCCCAAAAGGGAGGTGGTCGTGCCCGCCACGGTTCCCTCCG
TTCGCCCATGCTGAAGGGCGGCGGCGTAGTGCACGGACCCAGGTCGCCTA
CGACCCATTTTTACATGCTGCCCTTCTATAAGAGGGTTTTAGGATTGACC
TCCACGCTGAGTGTTAAGCTGGCCCAGGATGATCTGCACATCATCGATAA
TGTGGACATACCCACCGGAGATGCAGAGTTCCTTAAGGATTTAATCGCCG
AACGGAATTGGGGACCTTCTGTTTTGATTGTAGACGAAGACCATATGTTC
CCCGCCAATATTTGCCAGGCTAGCGATGATCTGGGCTATGTCAACCTGAT
GCCAACCTTTGGCTTGAACGTCTATTCTATGCTGAAGCACGATACTTTGG
TGCTGACAGTGGCTGCAGTGAAACATCTGGAGCAGCGCCTGCTCTACCAA
CTTAATCGAAACGACGCCGCCAGCAAGGGCGGCAAGTTTAAGCTGGATCA
AGTCTAGAAGCTTTCTAGACCAT
BS06086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL4-RA | 891 | CG5818-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL4-RA | 1012 | CG5818-RA | 51..944 | 17..910 | 4470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16328412..16329082 | 687..17 | 3355 | 100 | Minus |
2L | 23513712 | 2L | 16328127..16328349 | 910..688 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:48:26 has no hits.
BS06086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:25 Download gff for
BS06086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL4-RA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:20 Download gff for
BS06086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL4-RA | 41..946 | 10..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:27 Download gff for
BS06086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL4-RA | 56..941 | 22..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:25 Download gff for
BS06086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL4-RA | 41..946 | 10..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:05 Download gff for
BS06086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL4-RA | 56..941 | 22..907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:05 Download gff for
BS06086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16328130..16328349 | 688..907 | 100 | <- | Minus |
2L | 16328412..16329077 | 22..687 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:27 Download gff for
BS06086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16328130..16328349 | 688..907 | 100 | <- | Minus |
arm_2L | 16328412..16329077 | 22..687 | 100 | | Minus |
BS06086.pep Sequence
Translation from 16 to 906
> BS06086.pep
MLNNILKTSRQVLYPVARTFSRSGNHGNVVTEAAATVGAPPATRSPLILP
QDYTDCLPVSRNTARQAWIENTDAVAERKVGLIELHPDVFAAQPRVDIIQ
ENVEWQSKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRARHGSLRSPMLK
GGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIDNVDIPT
GDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGL
NVYSMLKHDTLVLTVAAVKHLEQRLLYQLNRNDAASKGGKFKLDQV*
BS06086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL4-PA | 296 | CG5818-PA | 1..296 | 1..296 | 1550 | 100 | Plus |