Clone BS06087 Report

Search the DGRC for BS06087

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptAos1-RA
Protein status:BS06087.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06087.3prime Sequence

878 bp (877 high quality bases) assembled on 2005-12-03

> BS06087.3prime
ATGGTCTAGAAAGCTTTCACTTCGCTCCGATGGCCTCAACGTATCCGGCA
CAAGTCTCTGGGTCAAAAACGAACAGATTACGGTGTGGCGCCTCCAATTT
AGTAACCACCTTGATGACCTCTTGTGCCACAACGCCGCCGACAACAGCGA
CCGCTGGCGAGATCTGTGCAAAAATCAGACCTAGAGCTTCGTCGCCCAGT
ATAGAGTTGGGCAGCAGTTCGTCGCGAATTCCGCGAAGCAATTCCAGGTC
AGCTTCTCGGGTCTTGTAGCTGGGATCCCGCTTGTGGGTTGTGCGGAACT
TTTGCAGGACACTTAATAGCAAAACACCCGGGCCATTGCGCTTCAATTTT
CGCAAATAACTAGGCTCGGTAACATCGAAATCAAGCCAGGCAGAGTAGCC
GGGATAATCCACATCACGCTGCGTTGGAATGGACACGGTTTCATACTTCT
TTTTCTTCTCCGAATTGGCTACGACCTTGTGCTTAATAACATCCTCGACG
TAGCTGTGCTTCTGCAGACTGGCAAAGTAGAACCCGAAGGTGCCCCACAC
ATCGGTGGCTATGAACTTGACGCCCAGGTCCCGGCAAATGGTGTCAATGC
GCAACAGTTCCTCGTTGGTCGCGCCATTGACCACCACAACGTCGAACTGA
CCGAAGAACTCAGAGGTCTTCTCCTTCAAGGGCTCGCGGTCGGCGGAGAT
GTCCACCATGGGATTGAGAGCACGTGCCCGTGTCAATGATGCTTCGGCCC
GGTTGGTGTTCAGCGATTCACGGGGGACAAGGAATTGTGAACAAAAGTCC
TCCTCGGTTACGTCCTTGTCATCCAGCAGCTTCACGGAGTTCACTCCGGA
CAGGATGATGTTCTTGGGTATCTCGGCG

BS06087.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12276-PA 1014 Aos1-RA 153..1014 878..17 4285 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
Aos1-RA 1167 CG12276-RA 244..1106 878..16 4300 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12432594..12433072 16..494 2395 100 Plus
3R 32079331 3R 12433128..12433512 494..878 1910 99.7 Plus
Blast to na_te.dros performed on 2015-02-11 10:47:32 has no hits.

BS06087.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:50 Download gff for BS06087.3prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-PA 153..1014 17..878 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:23 Download gff for BS06087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12276-PA 153..1014 17..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:09:24 Download gff for BS06087.3prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 244..1109 10..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:12 Download gff for BS06087.3prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 244..1109 10..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:12 Download gff for BS06087.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12432591..12433072 10..494 99 <- Plus
3R 12433129..12433512 495..878 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:09:24 Download gff for BS06087.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8258313..8258794 10..494 99 <- Plus
arm_3R 8258851..8259234 495..878 99   Plus

BS06087.5prime Sequence

946 bp (847 high quality bases) assembled on 2005-12-03

> BS06087.5prime
GAAGTTATCAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCG
TGGAGCTCACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTC
TGGGGTCTGGAATCTCAGAAACGCCTTCGCACGGCCAAGATTCTCATCGC
TGGACTGTGCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCG
GAGTGAACTCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGAC
TTTTGTTCACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGC
CGAAGCATCATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCT
CCGCCGACCGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAG
TTCGACGTTGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCAT
TGACACCATTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGT
GGGGCACCTTCGGGTTCTACTTTGCCAGTCTGCAGAAGCACAGCTACGTC
GAGGATGTTATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAA
GTATGAAACCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCT
ACTCTGCCTGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAA
TTGAAGCGCAATGGCCCGGGTGTTTTGCTATTAAGTGTCCTGCAAAAGTT
CCGCACAACCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACC
TGGAATTGCTTCGCGGAATTCGCGACGAACTGCTGCCCAACTCTATACTG
GGCGACGAAGCTCTAGGTCTGATTTTTGCACAGATCTCGCCAGCGGTCGC
TGTTGTCGGCGGCGTTGTGGCACCAGAAGTCATCAAGGTGGGTACT

BS06087.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12276-PA 1014 Aos1-RA 1..925 17..941 4575 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Aos1-RA 1167 CG12276-RA 92..1021 17..946 4605 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12433128..12433558 553..123 2155 100 Minus
3R 32079331 3R 12432679..12433072 946..553 1925 99.2 Minus
3R 32079331 3R 12433625..12433731 123..17 535 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:51:17 has no hits.

BS06087.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:51 Download gff for BS06087.5prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-PA 1..930 17..946 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:24 Download gff for BS06087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12276-PA 1..930 17..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:54:31 Download gff for BS06087.5prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 92..1021 17..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:39:37 Download gff for BS06087.5prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 92..1021 17..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:39:37 Download gff for BS06087.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12432679..12433072 553..946 99 <- Minus
3R 12433129..12433557 124..552 100 <- Minus
3R 12433625..12433731 17..123 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:54:31 Download gff for BS06087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8258401..8258794 553..946 99 <- Minus
arm_3R 8258851..8259279 124..552 100 <- Minus
arm_3R 8259347..8259453 17..123 100   Minus

BS06087.complete Sequence

1046 bp (1046 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635346

> BS06087.complete
GAAGTTATCAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCG
TGGAGCTCACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTC
TGGGGTCTGGAATCTCAGAAACGCCTTCGCACGGCCAAGATTCTCATCGC
TGGACTGTGCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCG
GAGTGAACTCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGAC
TTTTGTTCACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGC
CGAAGCATCATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCT
CCGCCGACCGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAG
TTCGACGTTGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCAT
TGACACCATTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGT
GGGGCACCTTCGGGTTCTACTTTGCCAGTCTGCAGAAGCACAGCTACGTC
GAGGATGTTATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAA
GTATGAAACCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCT
ACTCTGCCTGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAA
TTGAAGCGCAATGGCCCGGGTGTTTTGCTATTAAGTGTCCTGCAAAAGTT
CCGCACAACCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACC
TGGAATTGCTTCGCGGAATTCGCGACGAACTGCTGCCCAACTCTATACTG
GGCGACGAAGCTCTAGGTCTGATTTTTGCACAGATCTCGCCAGCGGTCGC
TGTTGTCGGCGGCGTTGTGGCACAAGAGGTCATCAAGGTGGTTACTAAAT
TGGAGGCGCCACACCGTAATCTGTTCGTTTTTGACCCAGAGACTTGTGCC
GGATACGTTGAGGCCATCGGAGCGAAGTGAAAGCTTTCTAGACCAT

BS06087.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Aos1-RA 1014 CG12276-PA 1..1014 17..1030 5070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
Aos1-RA 1167 CG12276-RA 92..1106 17..1031 5075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12432594..12433072 1031..553 2395 100 Minus
3R 32079331 3R 12433128..12433558 553..123 2155 100 Minus
3R 32079331 3R 12433625..12433731 123..17 535 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:03:09 has no hits.

BS06087.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:26 Download gff for BS06087.complete
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 1..1014 17..1030 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:21 Download gff for BS06087.complete
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 174..1191 17..1037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:32 Download gff for BS06087.complete
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 92..1104 17..1029 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:26 Download gff for BS06087.complete
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 174..1191 17..1037 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:01 Download gff for BS06087.complete
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 92..1104 17..1029 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:01 Download gff for BS06087.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12432596..12433072 553..1029 100 <- Minus
3R 12433129..12433557 124..552 100 <- Minus
3R 12433625..12433731 17..123 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:32 Download gff for BS06087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8258318..8258794 553..1029 100 <- Minus
arm_3R 8258851..8259279 124..552 100 <- Minus
arm_3R 8259347..8259453 17..123 100   Minus

BS06087.pep Sequence

Translation from 16 to 1029

> BS06087.pep
MVVDMDTSETAVELTEAENELYDRQIRLWGLESQKRLRTAKILIAGLCGL
GAEITKNIILSGVNSVKLLDDKDVTEEDFCSQFLVPRESLNTNRAEASLT
RARALNPMVDISADREPLKEKTSEFFGQFDVVVVNGATNEELLRIDTICR
DLGVKFIATDVWGTFGFYFASLQKHSYVEDVIKHKVVANSEKKKKYETVS
IPTQRDVDYPGYSAWLDFDVTEPSYLRKLKRNGPGVLLLSVLQKFRTTHK
RDPSYKTREADLELLRGIRDELLPNSILGDEALGLIFAQISPAVAVVGGV
VAQEVIKVVTKLEAPHRNLFVFDPETCAGYVEAIGAK*

BS06087.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Aos1-PA 337 CG12276-PA 1..337 1..337 1710 100 Plus
Uba1-PC 1008 CG1782-PC 11..172 16..180 226 33.9 Plus
Uba1-PA 1191 CG1782-PA 194..355 16..180 226 33.9 Plus
APP-BP1-PA 524 CG7828-PA 14..178 18..179 188 29.9 Plus
APP-BP1-PB 524 CG7828-PB 14..178 18..179 188 29.9 Plus