Clone Sequence Records
BS06087.3prime Sequence
878 bp (877 high quality bases) assembled on 2005-12-03
> BS06087.3prime
ATGGTCTAGAAAGCTTTCACTTCGCTCCGATGGCCTCAACGTATCCGGCA
CAAGTCTCTGGGTCAAAAACGAACAGATTACGGTGTGGCGCCTCCAATTT
AGTAACCACCTTGATGACCTCTTGTGCCACAACGCCGCCGACAACAGCGA
CCGCTGGCGAGATCTGTGCAAAAATCAGACCTAGAGCTTCGTCGCCCAGT
ATAGAGTTGGGCAGCAGTTCGTCGCGAATTCCGCGAAGCAATTCCAGGTC
AGCTTCTCGGGTCTTGTAGCTGGGATCCCGCTTGTGGGTTGTGCGGAACT
TTTGCAGGACACTTAATAGCAAAACACCCGGGCCATTGCGCTTCAATTTT
CGCAAATAACTAGGCTCGGTAACATCGAAATCAAGCCAGGCAGAGTAGCC
GGGATAATCCACATCACGCTGCGTTGGAATGGACACGGTTTCATACTTCT
TTTTCTTCTCCGAATTGGCTACGACCTTGTGCTTAATAACATCCTCGACG
TAGCTGTGCTTCTGCAGACTGGCAAAGTAGAACCCGAAGGTGCCCCACAC
ATCGGTGGCTATGAACTTGACGCCCAGGTCCCGGCAAATGGTGTCAATGC
GCAACAGTTCCTCGTTGGTCGCGCCATTGACCACCACAACGTCGAACTGA
CCGAAGAACTCAGAGGTCTTCTCCTTCAAGGGCTCGCGGTCGGCGGAGAT
GTCCACCATGGGATTGAGAGCACGTGCCCGTGTCAATGATGCTTCGGCCC
GGTTGGTGTTCAGCGATTCACGGGGGACAAGGAATTGTGAACAAAAGTCC
TCCTCGGTTACGTCCTTGTCATCCAGCAGCTTCACGGAGTTCACTCCGGA
CAGGATGATGTTCTTGGGTATCTCGGCG
BS06087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12276-PA | 1014 | Aos1-RA | 153..1014 | 878..17 | 4285 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aos1-RA | 1167 | CG12276-RA | 244..1106 | 878..16 | 4300 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12432594..12433072 | 16..494 | 2395 | 100 | Plus |
3R | 32079331 | 3R | 12433128..12433512 | 494..878 | 1910 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:47:32 has no hits.
BS06087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:50 Download gff for
BS06087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-PA | 153..1014 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:23 Download gff for
BS06087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12276-PA | 153..1014 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:09:24 Download gff for
BS06087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 244..1109 | 10..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:12 Download gff for
BS06087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 244..1109 | 10..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:12 Download gff for
BS06087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12432591..12433072 | 10..494 | 99 | <- | Plus |
3R | 12433129..12433512 | 495..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:09:24 Download gff for
BS06087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8258313..8258794 | 10..494 | 99 | <- | Plus |
arm_3R | 8258851..8259234 | 495..878 | 99 | | Plus |
BS06087.5prime Sequence
946 bp (847 high quality bases) assembled on 2005-12-03
> BS06087.5prime
GAAGTTATCAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCG
TGGAGCTCACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTC
TGGGGTCTGGAATCTCAGAAACGCCTTCGCACGGCCAAGATTCTCATCGC
TGGACTGTGCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCG
GAGTGAACTCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGAC
TTTTGTTCACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGC
CGAAGCATCATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCT
CCGCCGACCGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAG
TTCGACGTTGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCAT
TGACACCATTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGT
GGGGCACCTTCGGGTTCTACTTTGCCAGTCTGCAGAAGCACAGCTACGTC
GAGGATGTTATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAA
GTATGAAACCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCT
ACTCTGCCTGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAA
TTGAAGCGCAATGGCCCGGGTGTTTTGCTATTAAGTGTCCTGCAAAAGTT
CCGCACAACCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACC
TGGAATTGCTTCGCGGAATTCGCGACGAACTGCTGCCCAACTCTATACTG
GGCGACGAAGCTCTAGGTCTGATTTTTGCACAGATCTCGCCAGCGGTCGC
TGTTGTCGGCGGCGTTGTGGCACCAGAAGTCATCAAGGTGGGTACT
BS06087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12276-PA | 1014 | Aos1-RA | 1..925 | 17..941 | 4575 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aos1-RA | 1167 | CG12276-RA | 92..1021 | 17..946 | 4605 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12433128..12433558 | 553..123 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 12432679..12433072 | 946..553 | 1925 | 99.2 | Minus |
3R | 32079331 | 3R | 12433625..12433731 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:51:17 has no hits.
BS06087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:51 Download gff for
BS06087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:24 Download gff for
BS06087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12276-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:54:31 Download gff for
BS06087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 92..1021 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:39:37 Download gff for
BS06087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 92..1021 | 17..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:39:37 Download gff for
BS06087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12432679..12433072 | 553..946 | 99 | <- | Minus |
3R | 12433129..12433557 | 124..552 | 100 | <- | Minus |
3R | 12433625..12433731 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:54:31 Download gff for
BS06087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8258401..8258794 | 553..946 | 99 | <- | Minus |
arm_3R | 8258851..8259279 | 124..552 | 100 | <- | Minus |
arm_3R | 8259347..8259453 | 17..123 | 100 | | Minus |
BS06087.complete Sequence
1046 bp (1046 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635346
> BS06087.complete
GAAGTTATCAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCG
TGGAGCTCACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTC
TGGGGTCTGGAATCTCAGAAACGCCTTCGCACGGCCAAGATTCTCATCGC
TGGACTGTGCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCG
GAGTGAACTCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGAC
TTTTGTTCACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGC
CGAAGCATCATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCT
CCGCCGACCGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAG
TTCGACGTTGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCAT
TGACACCATTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGT
GGGGCACCTTCGGGTTCTACTTTGCCAGTCTGCAGAAGCACAGCTACGTC
GAGGATGTTATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAA
GTATGAAACCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCT
ACTCTGCCTGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAA
TTGAAGCGCAATGGCCCGGGTGTTTTGCTATTAAGTGTCCTGCAAAAGTT
CCGCACAACCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACC
TGGAATTGCTTCGCGGAATTCGCGACGAACTGCTGCCCAACTCTATACTG
GGCGACGAAGCTCTAGGTCTGATTTTTGCACAGATCTCGCCAGCGGTCGC
TGTTGTCGGCGGCGTTGTGGCACAAGAGGTCATCAAGGTGGTTACTAAAT
TGGAGGCGCCACACCGTAATCTGTTCGTTTTTGACCCAGAGACTTGTGCC
GGATACGTTGAGGCCATCGGAGCGAAGTGAAAGCTTTCTAGACCAT
BS06087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aos1-RA | 1014 | CG12276-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aos1-RA | 1167 | CG12276-RA | 92..1106 | 17..1031 | 5075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12432594..12433072 | 1031..553 | 2395 | 100 | Minus |
3R | 32079331 | 3R | 12433128..12433558 | 553..123 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 12433625..12433731 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:03:09 has no hits.
BS06087.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:26 Download gff for
BS06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 1..1014 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:21 Download gff for
BS06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 174..1191 | 17..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:32 Download gff for
BS06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 92..1104 | 17..1029 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:26 Download gff for
BS06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 174..1191 | 17..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:01 Download gff for
BS06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 92..1104 | 17..1029 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:01 Download gff for
BS06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12432596..12433072 | 553..1029 | 100 | <- | Minus |
3R | 12433129..12433557 | 124..552 | 100 | <- | Minus |
3R | 12433625..12433731 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:32 Download gff for
BS06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8258318..8258794 | 553..1029 | 100 | <- | Minus |
arm_3R | 8258851..8259279 | 124..552 | 100 | <- | Minus |
arm_3R | 8259347..8259453 | 17..123 | 100 | | Minus |
BS06087.pep Sequence
Translation from 16 to 1029
> BS06087.pep
MVVDMDTSETAVELTEAENELYDRQIRLWGLESQKRLRTAKILIAGLCGL
GAEITKNIILSGVNSVKLLDDKDVTEEDFCSQFLVPRESLNTNRAEASLT
RARALNPMVDISADREPLKEKTSEFFGQFDVVVVNGATNEELLRIDTICR
DLGVKFIATDVWGTFGFYFASLQKHSYVEDVIKHKVVANSEKKKKYETVS
IPTQRDVDYPGYSAWLDFDVTEPSYLRKLKRNGPGVLLLSVLQKFRTTHK
RDPSYKTREADLELLRGIRDELLPNSILGDEALGLIFAQISPAVAVVGGV
VAQEVIKVVTKLEAPHRNLFVFDPETCAGYVEAIGAK*
BS06087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aos1-PA | 337 | CG12276-PA | 1..337 | 1..337 | 1710 | 100 | Plus |
Uba1-PC | 1008 | CG1782-PC | 11..172 | 16..180 | 226 | 33.9 | Plus |
Uba1-PA | 1191 | CG1782-PA | 194..355 | 16..180 | 226 | 33.9 | Plus |
APP-BP1-PA | 524 | CG7828-PA | 14..178 | 18..179 | 188 | 29.9 | Plus |
APP-BP1-PB | 524 | CG7828-PB | 14..178 | 18..179 | 188 | 29.9 | Plus |