Clone Sequence Records
BS06090.3prime Sequence
935 bp (859 high quality bases) assembled on 2005-12-03
> BS06090.3prime
ATGGTCTAGAAAGCTTTCAGTAAATGGCCATGGCCACCTTCTTCTCCAGC
GTCTTGCAGCCCGAAATGGCGAACAAGCTGTGCGTGCGATCGTAACTAAT
GGAGGAGTTTATTATGTCCTCAATGATTTTTTGGTTGTTCGCTTGCTTAG
GATCGCGCCGCCACCTTAAAAGCTCCGCCTCCAGGCACTTGATCACATGC
GCCTTCTCCATCGGCAGGAACGGAATGAAATGATCGATAACATGAGACTC
AATCATGGTGGTCTTTTTCATACCGCCATCCATGTTATAGGCGGCCTTCC
GCAAAAGGGGCTCAAAGTCACTCAGTCGTGTGTCCTCGCGCAGCCTACCA
TTCTTCATCACACTACCCAGATGACTGGCTATATGACTGCCCGCCGTGTT
CGAGAGAAAGATGAAGATTGCCTTTGTGTTATCCGTGCCATCGACAAAGG
CGTTGTAGTCCACCAGCGAGGTGAGCTGGTCGAATACTCCGCTGGGCATT
TTATCCACCTCGTCGAAGATGAACAAAGATCTCGGGCAGCTACGCAAGGT
ATCGCGCACCGCATTATTGATTTTCACCCTATAGTTAGACACCTCACTTT
CCTTGGGAAAGTCAGCTTGTCCGAGATACTTGGTTACATAGTTCGACCTG
GAGCCCTTCAAATACATAGCATCTGCAATTTGCTCAGCCACAAAATTCTT
GCCCGTACCGGGCTGGCCGTGAAAGCTGATGACCAGCGGTTTCCGTGACT
TATTGCCCGAAGCGATGTGCGCCTTCAGTGCGGGGACGATATGCTGCCTC
ACGATGTGCTGGCCAATGAGGGTGCGTTCCAGGGATCTTTCTAATTCATC
TATTCTCGCCGGAATGTTTCGGTCATCGCAGCATTTCGCAAAACGGCAAT
ATGTATGTTTCTTTGAGTACGCCCCAAGGGCCACG
BS06090.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3024-PA | 1023 | torp4a-RA | 131..1023 | 909..17 | 4390 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-RB | 1383 | CG3024-RB | 372..1290 | 935..17 | 4505 | 99.5 | Minus |
| Torsin-RA | 1184 | CG3024-RA | 173..1091 | 935..17 | 4505 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4648685..4649515 | 17..847 | 4155 | 100 | Plus |
| X | 23542271 | X | 4649573..4649661 | 847..935 | 340 | 92.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:31:52 has no hits.
BS06090.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:54 Download gff for
BS06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3024-PA | 105..1023 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:29 Download gff for
BS06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3024-PA | 105..1023 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:11 Download gff for
BS06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 173..1091 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:47:43 Download gff for
BS06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 173..1091 | 17..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:47:43 Download gff for
BS06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4648685..4649514 | 17..846 | 100 | <- | Plus |
| X | 4649573..4649661 | 847..935 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:11 Download gff for
BS06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4542718..4543547 | 17..846 | 100 | <- | Plus |
| arm_X | 4543606..4543694 | 847..935 | 94 | | Plus |
BS06090.5prime Sequence
915 bp (785 high quality bases) assembled on 2005-12-03
> BS06090.5prime
GAAGTTATCAGTCGACATGATGAGCTTTCCACGCATGTTATCACTGTGCC
TTAGCGTGCTTGTAATACTGCCGCTTCCCCTCCAGTCGGTGGATCCCCTG
ACCATTGGTGCCGTTGGCGCCGTGGCCCTTGGGGCGTACTTCAAAGAACA
TACATATTGCCGGTTTGCCGAATGCTGCGATGACCGAAACATTCCGGCGA
GAATAGATGAATTAGAAAGATCCCTGGAACGCACCCTCATTGGCCAGCAC
ATCGTGAGGCAGCATATCGTCCCCGCACTGAAGGCGCACATCGCTTCGGG
CAATAAGTCACGGAAACCGCTGGTCATCAGCTTTCACGGCCAGCCCGGTA
CGGGCAAGAATTTTGTGGCTGAGCAAATTGCAGATGCTATGTATTTGAAG
GGCTCCAGGTCGAACTATGTAACCAAGTATCTCGGACAAGCTGACTTTCC
CAAGGAAAGTGAGGTGTCTAACTATAGGGTGAAAATCAATAATGCGGTGC
GCGATACCTTGCGTAGCTGCCCGAGATCTTTGTTCATCTTCGACGAGGTG
GATAAAATGCCCAGCGGAGTATTCGACCAGCTCACCTCGCTGGTGGACTA
CAACGCCTTTGTCGATGGCACGGATAACACAAAGGCAATCTTCATCTTTC
TCTCGAACACGGCGGGCAGTCATATAGCCAGTCATCTGGGTAGTGTGATG
AAGAATGGTAGGCTGCGCGAGGACACACGACTGAGTGACTTTGAGCCCCT
TTTGCGGAAGGCCGCCTATAACATGGATGGCGGTATGAAAAAGACCACCA
TGATTGAGTCTCATGTTATCGATCATTTCATTCCGTTCCCTGCGATGGAG
AAGGCGCATGTGATCAAGTGCCTGGAGGCGGAGCTTTTAAGGTGGCGGCG
CGATCCTAGCAAGCG
BS06090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3024-PA | 1023 | torp4a-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
| CG3024-PA | 1023 | torp4a-RA | 827..892 | 843..908 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-RB | 1383 | CG3024-RB | 268..1167 | 17..915 | 4430 | 99.7 | Plus |
| Torsin-RA | 1184 | CG3024-RA | 69..968 | 17..915 | 4430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4648816..4649515 | 908..209 | 3455 | 99.6 | Minus |
| X | 23542271 | X | 4649573..4649765 | 209..17 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:58:58 has no hits.
BS06090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:55 Download gff for
BS06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3024-PA | 1..900 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:30 Download gff for
BS06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3024-PA | 1..900 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:46:07 Download gff for
BS06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 69..968 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:29 Download gff for
BS06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 69..968 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:29 Download gff for
BS06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4649573..4649765 | 17..209 | 100 | | Minus |
| X | 4648808..4649514 | 210..915 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:46:07 Download gff for
BS06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4542841..4543547 | 210..915 | 99 | <- | Minus |
| arm_X | 4543606..4543798 | 17..209 | 100 | | Minus |
BS06090.complete Sequence
1055 bp (1055 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635347
> BS06090.complete
GAAGTTATCAGTCGACATGATGAGCTTTCCACGCATGTTATCACTGTGCC
TTAGCGTGCTTGTAATACTGCCGCTTCCCCTCCAGTCGGTGGATCCCCTG
ACCATTGGTGCCGTTGGCGCCGTGGCCCTTGGGGCGTACTTCAAAGAACA
TACATATTGCCGGTTTGCCGAATGCTGCGATGACCGAAACATTCCGGCGA
GAATAGATGAATTAGAAAGATCCCTGGAACGCACCCTCATTGGCCAGCAC
ATCGTGAGGCAGCATATCGTCCCCGCACTGAAGGCGCACATCGCTTCGGG
CAATAAGTCACGGAAACCGCTGGTCATCAGCTTTCACGGCCAGCCCGGTA
CGGGCAAGAATTTTGTGGCTGAGCAAATTGCAGATGCTATGTATTTGAAG
GGCTCCAGGTCGAACTATGTAACCAAGTATCTCGGACAAGCTGACTTTCC
CAAGGAAAGTGAGGTGTCTAACTATAGGGTGAAAATCAATAATGCGGTGC
GCGATACCTTGCGTAGCTGCCCGAGATCTTTGTTCATCTTCGACGAGGTG
GATAAAATGCCCAGCGGAGTATTCGACCAGCTCACCTCGCTGGTGGACTA
CAACGCCTTTGTCGATGGCACGGATAACACAAAGGCAATCTTCATCTTTC
TCTCGAACACGGCGGGCAGTCATATAGCCAGTCATCTGGGTAGTGTGATG
AAGAATGGTAGGCTGCGCGAGGACACACGACTGAGTGACTTTGAGCCCCT
TTTGCGGAAGGCCGCCTATAACATGGATGGCGGTATGAAAAAGACCACCA
TGATTGAGTCTCATGTTATCGATCATTTCATTCCGTTCCTGCCGATGGAG
AAGGCGCATGTGATCAAGTGCCTGGAGGCGGAGCTTTTAAGGTGGCGGCG
CGATCCTAAGCAAGCGAACAACCAAAAAATCATTGAGGACATAATAAACT
CCTCCATTAGTTACGATCGCACGCACAGCTTGTTCGCCATTTCGGGCTGC
AAGACGCTGGAGAAGAAGGTGGCCATGGCCATTTACTGAAAGCTTTCTAG
ACCAT
BS06090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-RB | 1023 | CG3024-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
| Torsin-RA | 1023 | CG3024-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-RB | 1383 | CG3024-RB | 268..1290 | 17..1039 | 5115 | 100 | Plus |
| Torsin-RA | 1184 | CG3024-RA | 69..1091 | 17..1039 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4648685..4649515 | 1039..209 | 4155 | 100 | Minus |
| X | 23542271 | X | 4649573..4649765 | 209..17 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:43:08 has no hits.
BS06090.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:27 Download gff for
BS06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| torp4a-RA | 1..1023 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:23 Download gff for
BS06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| torp4a-RA | 68..1090 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:03 Download gff for
BS06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 69..1090 | 17..1038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:27 Download gff for
BS06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| torp4a-RA | 68..1090 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:21 Download gff for
BS06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 69..1090 | 17..1038 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:21 Download gff for
BS06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4648686..4649514 | 210..1038 | 100 | <- | Minus |
| X | 4649573..4649765 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:03 Download gff for
BS06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4542719..4543547 | 210..1038 | 100 | <- | Minus |
| arm_X | 4543606..4543798 | 17..209 | 100 | | Minus |
BS06090.pep Sequence
Translation from 16 to 1038
> BS06090.pep
MMSFPRMLSLCLSVLVILPLPLQSVDPLTIGAVGAVALGAYFKEHTYCRF
AECCDDRNIPARIDELERSLERTLIGQHIVRQHIVPALKAHIASGNKSRK
PLVISFHGQPGTGKNFVAEQIADAMYLKGSRSNYVTKYLGQADFPKESEV
SNYRVKINNAVRDTLRSCPRSLFIFDEVDKMPSGVFDQLTSLVDYNAFVD
GTDNTKAIFIFLSNTAGSHIASHLGSVMKNGRLREDTRLSDFEPLLRKAA
YNMDGGMKKTTMIESHVIDHFIPFLPMEKAHVIKCLEAELLRWRRDPKQA
NNQKIIEDIINSSISYDRTHSLFAISGCKTLEKKVAMAIY*
BS06090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-PB | 340 | CG3024-PB | 1..340 | 1..340 | 1754 | 100 | Plus |
| Torsin-PA | 340 | CG3024-PA | 1..340 | 1..340 | 1754 | 100 | Plus |
