Clone Sequence Records
BS06091.3prime Sequence
945 bp (812 high quality bases) assembled on 2005-12-03
> BS06091.3prime
ATGGTCTAGAAAGCTTTTACGCCAGCTGCTTGGGCTTAATGAAAGTGCGC
TTGCGCTTGTTGCGTTTTCGCTGCAGCTCCAGGGCGTGCAGTTCCGTGTG
CACCTCGGCGAAGATCTCCGTCTGCTCCTCCTCGGGAATCGAGCTGCGGT
AGTCCTTCATCATGTCGTACTTCTCCCATGGTTTCTGCACCTTGGCCGCC
GACAGGCGATGCTTGTCTTTTAGATACTCATCGATGTTGGCCACACCACG
CAGATTCTGTCGTTCCCAGCGCTCCAGCCATGGACGCGGACGGAGCACCA
CCTTAATGTCGTTCACCGGCACCGGAGCACCCTCCTCGAGCGGCTCGGCC
TCCATGTTCTCATCAAAAGTACTGTACTCCGGAAGAGCGTCCCGCAGGTA
GAAAAGACTGTCATCCAGTCGCTTCTCTAGCCGCAACACCTCGATCTTTA
GGATGGTAGGATCATACAGCTCGTAGACCACCTCCATTCCCTGGTGATCA
ATCACGTTGCGAAGAATGAAACGGGCGCGCAGTCCACAGCGATCCCTATT
GATACAGATACCCACAAATCGACTGGTTTTGCCAGCGGCATGGGGATCCG
AACTTGTCACCGCAAGCACAGATCCAACGTAGAACTCGGGCAGGTCGATC
TGTTTGCGGCGATCCAGCATGTCCAGTCGCTCCAGCTTCTCGCGCACGAG
GTTGCGCCACTCCACCTTCGGATCGGGCAGGAATTCTGGGTAAACAAACC
GATAATTGGCCGGAATGATTGTCTTCCGGTTCACCGGTGAAGTCGGCGTG
GTTGGCGGAGCCTCTTTCTTCTGTTCCTCCTGATTTTCANTTACATGTTC
CGCAGTTTTGGTGGAGAAGGTCACAATCCGCTTGTAGACACACTGCTGTG
TCACCTATTCAGCATAACTCTTGTGCTTAAGTCATGTCGACTGAT
BS06091.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8039-PA | 921 | mRpL19-RA | 35..921 | 903..17 | 4416 | 99.8 | Minus |
| CG8039-PA | 921 | mRpL19-RA | 5..34 | 932..903 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL19-RA | 1036 | CG8039-RA | 83..999 | 932..17 | 4549 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8674302..8675159 | 874..17 | 4279 | 99.9 | Minus |
| 3R | 32079331 | 3R | 8674191..8674250 | 932..874 | 250 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:26:13 has no hits.
BS06091.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:56 Download gff for
BS06091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8039-PA | 1..921 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:32 Download gff for
BS06091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8039-PA | 1..921 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:00:32 Download gff for
BS06091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 74..1006 | 10..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:23:27 Download gff for
BS06091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 74..1006 | 10..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:23:27 Download gff for
BS06091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8674182..8674250 | 874..940 | 94 | -> | Minus |
| 3R | 8674303..8675166 | 10..873 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:00:32 Download gff for
BS06091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4499904..4499972 | 874..940 | 94 | -> | Minus |
| arm_3R | 4500025..4500888 | 10..873 | 99 | | Minus |
BS06091.5prime Sequence
887 bp (827 high quality bases) assembled on 2005-12-03
> BS06091.5prime
GAAGTTATCAGTCGACATGAACTTAAGCACAAGAGTTATGCTGAATAGGT
TGACACAGCAGTGTGTCTACAAGCGGATTGTGACCTTCTCCACCAAAACT
GCGGAACATGTAATTGAAAATCAGGAGGAACAGAAGAAAGAGGCTCCGCC
AACCACGCCGACTTCACCGGTGAACCGGAAGACAATCATTCCGGCCAATT
ATCGGTTTGTTTACCCAGAATTCCTGCCCGATCCGAAGGTGGAGTGGCGC
AACCTCGTGCGCGAGAAGCTGGAGCGACTGGACATGCTGGATCGCCGCAA
ACAGATCGACCTGCCCGAGTTCTACGTTGGATCTGTGCTTGCGGTGACAA
GTTCGGATCCCCATGCCGCTGGCAAAACCAGTCGATTTGTGGGTATCTGT
ATCAATAGGGATCGCTGTGGACTGCGCGCCCGTTTCATTCTTCGCAACGT
GATTGATCACCAGGGAATGGAGGTGGTCTACGAGCTGTATGATCCTACCA
TCCTAAAGATCGAGGTGTTGCGGCTAGAGAAGCGACTGGATGACAGTCTT
TTCTACCTGCGGGACGCTCTTCCGGAGTACAGTACTTTTGATGAGAACAT
GGAGGCCGAGCCGCTCGAGGAGGGTGCTCCGGTGCCGGTGAACGACATTA
AGGTGGTGCTCCGTCCGCGTCCATGGCTGGAGCGCTGGGAACGACAGAAT
CTGCGTGGTGTGGCCAACATCGATGAGTATCTAAAAGACAAGCATCGCCT
GTCGGCGGCCAAGGTGCAGAAACCATGGGAGAAGTACGACATGATGAAGG
ACTACCGCAGCTCGATTCCCGAGGAGGAGCAGACGGAGATCTTCGCCGAG
GTGCACACGGAACTGCACGCCCTGGAGCTGCAGCGAA
BS06091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8039-PA | 921 | mRpL19-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL19-RA | 1036 | CG8039-RA | 79..949 | 17..887 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8674302..8675109 | 80..887 | 4040 | 100 | Plus |
| 3R | 32079331 | 3R | 8674187..8674250 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:35:15 has no hits.
BS06091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:57 Download gff for
BS06091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8039-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:33 Download gff for
BS06091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8039-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:15:24 Download gff for
BS06091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 74..949 | 12..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:19 Download gff for
BS06091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 74..949 | 12..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:19 Download gff for
BS06091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8674182..8674250 | 12..80 | 97 | -> | Plus |
| 3R | 8674303..8675109 | 81..887 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:15:24 Download gff for
BS06091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4499904..4499972 | 12..80 | 97 | -> | Plus |
| arm_3R | 4500025..4500831 | 81..887 | 100 | | Plus |
BS06091.complete Sequence
953 bp (953 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635348
> BS06091.complete
GAAGTTATCAGTCGACATGAACTTAAGCACAAGAGTTATGCTGAATAGGT
TGACACAGCAGTGTGTCTACAAGCGGATTGTGACCTTCTCCACCAAAACT
GCGGAACATGTAATTGAAAATCAGGAGGAACAGAAGAAAGAGGCTCCGCC
AACCACGCCGACTTCACCGGTGAACCGGAAGACAATCATTCCGGCCAATT
ATCGGTTTGTTTACCCAGAATTCCTGCCCGATCCGAAGGTGGAGTGGCGC
AACCTCGTGCGCGAGAAGCTGGAGCGACTGGACATGCTGGATCGCCGCAA
ACAGATCGACCTGCCCGAGTTCTACGTTGGATCTGTGCTTGCGGTGACAA
GTTCGGATCCCCATGCCGCTGGCAAAACCAGTCGATTTGTGGGTATCTGT
ATCAATAGGGATCGCTGTGGACTGCGCGCCCGTTTCATTCTTCGCAACGT
GATTGATCACCAGGGAATGGAGGTGGTCTACGAGCTGTATGATCCTACCA
TCCTAAAGATCGAGGTGTTGCGGCTAGAGAAGCGACTGGATGACAGTCTT
TTCTACCTGCGGGACGCTCTTCCGGAGTACAGTACTTTTGATGAGAACAT
GGAGGCCGAGCCGCTCGAGGAGGGTGCTCCGGTGCCGGTGAACGACATTA
AGGTGGTGCTCCGTCCGCGTCCATGGCTGGAGCGCTGGGAACGACAGAAT
CTGCGTGGTGTGGCCAACATCGATGAGTATCTAAAAGACAAGCATCGCCT
GTCGGCGGCCAAGGTGCAGAAACCATGGGAGAAGTACGACATGATGAAGG
ACTACCGCAGCTCGATTCCCGAGGAGGAGCAGACGGAGATCTTCGCCGAG
GTGCACACGGAACTGCACGCCCTGGAGCTGCAGCGAAAACGCAACAAGCG
CAAGCGCACTTTCATTAAGCCCAAGCAGCTGGCGTAAAAGCTTTCTAGAC
CAT
BS06091.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL19-RA | 921 | CG8039-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL19-RA | 1036 | CG8039-RA | 79..999 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8674302..8675159 | 80..937 | 4290 | 100 | Plus |
| 3R | 32079331 | 3R | 8674187..8674250 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:03:19 has no hits.
BS06091.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:28 Download gff for
BS06091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:24 Download gff for
BS06091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 66..998 | 12..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:15 Download gff for
BS06091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 79..997 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:28 Download gff for
BS06091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 66..998 | 12..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:46 Download gff for
BS06091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 79..997 | 17..935 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:46 Download gff for
BS06091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8674187..8674250 | 17..80 | 100 | -> | Plus |
| 3R | 8674303..8675157 | 81..935 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:15 Download gff for
BS06091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4499909..4499972 | 17..80 | 100 | -> | Plus |
| arm_3R | 4500025..4500879 | 81..935 | 100 | | Plus |
BS06091.pep Sequence
Translation from 16 to 936
> BS06091.pep
MNLSTRVMLNRLTQQCVYKRIVTFSTKTAEHVIENQEEQKKEAPPTTPTS
PVNRKTIIPANYRFVYPEFLPDPKVEWRNLVREKLERLDMLDRRKQIDLP
EFYVGSVLAVTSSDPHAAGKTSRFVGICINRDRCGLRARFILRNVIDHQG
MEVVYELYDPTILKIEVLRLEKRLDDSLFYLRDALPEYSTFDENMEAEPL
EEGAPVPVNDIKVVLRPRPWLERWERQNLRGVANIDEYLKDKHRLSAAKV
QKPWEKYDMMKDYRSSIPEEEQTEIFAEVHTELHALELQRKRNKRKRTFI
KPKQLA*
BS06091.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL19-PA | 306 | CG8039-PA | 1..306 | 1..306 | 1596 | 100 | Plus |
