Clone BS06092 Report

Search the DGRC for BS06092

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptTom20-RA
Protein status:BS06092.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06092.3prime Sequence

546 bp (545 high quality bases) assembled on 2005-12-03

> BS06092.3prime
ATGGTCTAGAAAGCTTCTATTCGAGGTCGTCGATACTTGCGTTTCCAGAT
GAACACTCTATAATTTTGGCTCCGTCCAGTTGTTGCTCCGAGCTCTGCCC
CAAAACGATTGGCCCGTCGTTGCCCTCGGCCGCTCGATTGCCGAACTCCT
GCATCTTGACGATCAGCATCGCGAATACTTGAGCTGGAAGGGAGGATTGC
AGCACCTGCAGCAGACGAGCCGGCTGGCCACACACGACGATGGCATTCGC
CAAGTGCTCCACGCCACTCTCGAAATCTCCGCGGGCGATCAGGGTCTCGC
CCAGCTGGATTTCTTGAAGGAAATATCTTTCGATGGCTTCATGGTCGTTC
AGATTGGGAACTCCAGACTTGGCAGTGCCGGTTTTCTTGTTGCGACGGCG
ACGCTCACGGACTTTCTTCTTGTACTCGGGATCGCTGCGGCGCTTCTTGT
CGAAGTAGATGCAGTATCCAATAAACAGAGTTCCAGCTACTCCCGCTGCA
ATGCCGATTGCAGTTTTGTTCATTTCAATCATGTCGACTGATAACT

BS06092.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7654-PA 516 Tom20-RA 1..516 532..17 2580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tom20-RB 1008 CG7654-RB 206..721 532..17 2580 100 Minus
Tom20-RA 743 CG7654-RA 80..595 532..17 2580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20001848..20002159 328..17 1560 100 Minus
3L 28110227 3L 20001167..20001298 532..401 660 100 Minus
3L 28110227 3L 20001361..20001436 402..327 380 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:22:01 has no hits.

BS06092.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:58 Download gff for BS06092.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-PA 1..516 17..532 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:34 Download gff for BS06092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7654-PA 1..516 17..532 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:17 Download gff for BS06092.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 74..605 5..539 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:23 Download gff for BS06092.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 74..605 5..539 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:23 Download gff for BS06092.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20001161..20001296 403..539 97 -> Minus
3L 20001361..20001436 327..402 100 -> Minus
3L 20001850..20002169 5..326 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:17 Download gff for BS06092.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19994261..19994396 403..539 97 -> Minus
arm_3L 19994461..19994536 327..402 100 -> Minus
arm_3L 19994950..19995269 5..326 98   Minus

BS06092.5prime Sequence

546 bp (545 high quality bases) assembled on 2005-12-03

> BS06092.5prime
GAAGTTATCAGTCGACATGATTGAAATGAACAAAACTGCAATCGGCATTG
CAGCGGGAGTAGCTGGAACTCTGTTTATTGGATACTGCATCTACTTCGAC
AAGAAGCGCCGCAGCGATCCCGAGTACAAGAAGAAAGTCCGTGAGCGTCG
CCGTCGCAACAAGAAAACCGGCACTGCCAAGTCTGGAGTTCCCAATCTGA
ACGACCATGAAGCCATCGAAAGATATTTCCTTCAAGAAATCCAGCTGGGC
GAGACCCTGATCGCCCGCGGAGATTTCGAGAGTGGCGTGGAGCACTTGGC
GAATGCCATCGTCGTGTGTGGCCAGCCGGCTCGTCTGCTGCAGGTGCTGC
AATCCTCCCTTCCAGCTCAAGTATTCGCGATGCTGATCGTCAAGATGCAG
GAGTTCGGCAATCGAGCGGCCGAGGGCAACGACGGGCCAATCGTTTTGGG
GCAGAGCTCGGAGCAACAACTGGACGGAGCCAAAATTATAGAGTGTTCAT
CTGGAAACGCAAGTATCGACGACCTCGAATAGAAGCTTTCTAGACC

BS06092.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7654-PA 516 Tom20-RA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Tom20-RB 1008 CG7654-RB 206..721 17..532 2580 100 Plus
Tom20-RA 743 CG7654-RA 80..595 17..532 2580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20001848..20002159 221..532 1560 100 Plus
3L 28110227 3L 20001167..20001298 17..148 660 100 Plus
3L 28110227 3L 20001361..20001436 147..222 380 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:11:21 has no hits.

BS06092.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:59 Download gff for BS06092.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-PA 1..516 17..532 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:36 Download gff for BS06092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7654-PA 1..516 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:32 Download gff for BS06092.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 74..605 10..544 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:52:34 Download gff for BS06092.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 74..605 10..544 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:52:34 Download gff for BS06092.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20001161..20001296 10..146 97 -> Plus
3L 20001361..20001436 147..222 100 -> Plus
3L 20001850..20002169 223..544 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:32 Download gff for BS06092.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19994261..19994396 10..146 97 -> Plus
arm_3L 19994461..19994536 147..222 100 -> Plus
arm_3L 19994950..19995269 223..544 98   Plus

BS06092.complete Sequence

548 bp (548 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635349

> BS06092.complete
GAAGTTATCAGTCGACATGATTGAAATGAACAAAACTGCAATCGGCATTG
CAGCGGGAGTAGCTGGAACTCTGTTTATTGGATACTGCATCTACTTCGAC
AAGAAGCGCCGCAGCGATCCCGAGTACAAGAAGAAAGTCCGTGAGCGTCG
CCGTCGCAACAAGAAAACCGGCACTGCCAAGTCTGGAGTTCCCAATCTGA
ACGACCATGAAGCCATCGAAAGATATTTCCTTCAAGAAATCCAGCTGGGC
GAGACCCTGATCGCCCGCGGAGATTTCGAGAGTGGCGTGGAGCACTTGGC
GAATGCCATCGTCGTGTGTGGCCAGCCGGCTCGTCTGCTGCAGGTGCTGC
AATCCTCCCTTCCAGCTCAAGTATTCGCGATGCTGATCGTCAAGATGCAG
GAGTTCGGCAATCGAGCGGCCGAGGGCAACGACGGGCCAATCGTTTTGGG
GCAGAGCTCGGAGCAACAACTGGACGGAGCCAAAATTATAGAGTGTTCAT
CTGGAAACGCAAGTATCGACGACCTCGAATAGAAGCTTTCTAGACCAT

BS06092.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Tom20-RB 516 CG7654-PB 1..516 17..532 2580 100 Plus
Tom20-RA 516 CG7654-PA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Tom20-RB 1008 CG7654-RB 206..721 17..532 2580 100 Plus
Tom20-RA 743 CG7654-RA 80..595 17..532 2580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20001848..20002159 221..532 1560 100 Plus
3L 28110227 3L 20001167..20001298 17..148 660 100 Plus
3L 28110227 3L 20001361..20001436 147..222 380 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:06:02 has no hits.

BS06092.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:29 Download gff for BS06092.complete
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 1..516 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:26 Download gff for BS06092.complete
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 73..604 10..544 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:41 Download gff for BS06092.complete
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 80..595 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:30 Download gff for BS06092.complete
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 73..604 10..544 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:10 Download gff for BS06092.complete
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 80..595 17..532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:10 Download gff for BS06092.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20001167..20001296 17..146 100 -> Plus
3L 20001361..20001436 147..222 100 -> Plus
3L 20001850..20002159 223..532 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:41 Download gff for BS06092.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19994267..19994396 17..146 100 -> Plus
arm_3L 19994461..19994536 147..222 100 -> Plus
arm_3L 19994950..19995259 223..532 100   Plus

BS06092.pep Sequence

Translation from 16 to 531

> BS06092.pep
MIEMNKTAIGIAAGVAGTLFIGYCIYFDKKRRSDPEYKKKVRERRRRNKK
TGTAKSGVPNLNDHEAIERYFLQEIQLGETLIARGDFESGVEHLANAIVV
CGQPARLLQVLQSSLPAQVFAMLIVKMQEFGNRAAEGNDGPIVLGQSSEQ
QLDGAKIIECSSGNASIDDLE*

BS06092.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tom20-PB 171 CG7654-PB 1..171 1..171 865 100 Plus
Tom20-PA 171 CG7654-PA 1..171 1..171 865 100 Plus
tomboy20-PA 147 CG14690-PA 10..128 11..130 328 47.5 Plus