Clone Sequence Records
BS06092.3prime Sequence
546 bp (545 high quality bases) assembled on 2005-12-03
> BS06092.3prime
ATGGTCTAGAAAGCTTCTATTCGAGGTCGTCGATACTTGCGTTTCCAGAT
GAACACTCTATAATTTTGGCTCCGTCCAGTTGTTGCTCCGAGCTCTGCCC
CAAAACGATTGGCCCGTCGTTGCCCTCGGCCGCTCGATTGCCGAACTCCT
GCATCTTGACGATCAGCATCGCGAATACTTGAGCTGGAAGGGAGGATTGC
AGCACCTGCAGCAGACGAGCCGGCTGGCCACACACGACGATGGCATTCGC
CAAGTGCTCCACGCCACTCTCGAAATCTCCGCGGGCGATCAGGGTCTCGC
CCAGCTGGATTTCTTGAAGGAAATATCTTTCGATGGCTTCATGGTCGTTC
AGATTGGGAACTCCAGACTTGGCAGTGCCGGTTTTCTTGTTGCGACGGCG
ACGCTCACGGACTTTCTTCTTGTACTCGGGATCGCTGCGGCGCTTCTTGT
CGAAGTAGATGCAGTATCCAATAAACAGAGTTCCAGCTACTCCCGCTGCA
ATGCCGATTGCAGTTTTGTTCATTTCAATCATGTCGACTGATAACT
BS06092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7654-PA | 516 | Tom20-RA | 1..516 | 532..17 | 2580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom20-RB | 1008 | CG7654-RB | 206..721 | 532..17 | 2580 | 100 | Minus |
Tom20-RA | 743 | CG7654-RA | 80..595 | 532..17 | 2580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20001848..20002159 | 328..17 | 1560 | 100 | Minus |
3L | 28110227 | 3L | 20001167..20001298 | 532..401 | 660 | 100 | Minus |
3L | 28110227 | 3L | 20001361..20001436 | 402..327 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:22:01 has no hits.
BS06092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:58 Download gff for
BS06092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-PA | 1..516 | 17..532 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:34 Download gff for
BS06092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7654-PA | 1..516 | 17..532 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:17 Download gff for
BS06092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 74..605 | 5..539 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:23 Download gff for
BS06092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 74..605 | 5..539 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:23 Download gff for
BS06092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20001161..20001296 | 403..539 | 97 | -> | Minus |
3L | 20001361..20001436 | 327..402 | 100 | -> | Minus |
3L | 20001850..20002169 | 5..326 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:17 Download gff for
BS06092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19994261..19994396 | 403..539 | 97 | -> | Minus |
arm_3L | 19994461..19994536 | 327..402 | 100 | -> | Minus |
arm_3L | 19994950..19995269 | 5..326 | 98 | | Minus |
BS06092.5prime Sequence
546 bp (545 high quality bases) assembled on 2005-12-03
> BS06092.5prime
GAAGTTATCAGTCGACATGATTGAAATGAACAAAACTGCAATCGGCATTG
CAGCGGGAGTAGCTGGAACTCTGTTTATTGGATACTGCATCTACTTCGAC
AAGAAGCGCCGCAGCGATCCCGAGTACAAGAAGAAAGTCCGTGAGCGTCG
CCGTCGCAACAAGAAAACCGGCACTGCCAAGTCTGGAGTTCCCAATCTGA
ACGACCATGAAGCCATCGAAAGATATTTCCTTCAAGAAATCCAGCTGGGC
GAGACCCTGATCGCCCGCGGAGATTTCGAGAGTGGCGTGGAGCACTTGGC
GAATGCCATCGTCGTGTGTGGCCAGCCGGCTCGTCTGCTGCAGGTGCTGC
AATCCTCCCTTCCAGCTCAAGTATTCGCGATGCTGATCGTCAAGATGCAG
GAGTTCGGCAATCGAGCGGCCGAGGGCAACGACGGGCCAATCGTTTTGGG
GCAGAGCTCGGAGCAACAACTGGACGGAGCCAAAATTATAGAGTGTTCAT
CTGGAAACGCAAGTATCGACGACCTCGAATAGAAGCTTTCTAGACC
BS06092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7654-PA | 516 | Tom20-RA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom20-RB | 1008 | CG7654-RB | 206..721 | 17..532 | 2580 | 100 | Plus |
Tom20-RA | 743 | CG7654-RA | 80..595 | 17..532 | 2580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20001848..20002159 | 221..532 | 1560 | 100 | Plus |
3L | 28110227 | 3L | 20001167..20001298 | 17..148 | 660 | 100 | Plus |
3L | 28110227 | 3L | 20001361..20001436 | 147..222 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:11:21 has no hits.
BS06092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:30:59 Download gff for
BS06092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-PA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:36 Download gff for
BS06092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7654-PA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:32 Download gff for
BS06092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 74..605 | 10..544 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:52:34 Download gff for
BS06092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 74..605 | 10..544 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:52:34 Download gff for
BS06092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20001161..20001296 | 10..146 | 97 | -> | Plus |
3L | 20001361..20001436 | 147..222 | 100 | -> | Plus |
3L | 20001850..20002169 | 223..544 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:32 Download gff for
BS06092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19994261..19994396 | 10..146 | 97 | -> | Plus |
arm_3L | 19994461..19994536 | 147..222 | 100 | -> | Plus |
arm_3L | 19994950..19995269 | 223..544 | 98 | | Plus |
BS06092.complete Sequence
548 bp (548 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635349
> BS06092.complete
GAAGTTATCAGTCGACATGATTGAAATGAACAAAACTGCAATCGGCATTG
CAGCGGGAGTAGCTGGAACTCTGTTTATTGGATACTGCATCTACTTCGAC
AAGAAGCGCCGCAGCGATCCCGAGTACAAGAAGAAAGTCCGTGAGCGTCG
CCGTCGCAACAAGAAAACCGGCACTGCCAAGTCTGGAGTTCCCAATCTGA
ACGACCATGAAGCCATCGAAAGATATTTCCTTCAAGAAATCCAGCTGGGC
GAGACCCTGATCGCCCGCGGAGATTTCGAGAGTGGCGTGGAGCACTTGGC
GAATGCCATCGTCGTGTGTGGCCAGCCGGCTCGTCTGCTGCAGGTGCTGC
AATCCTCCCTTCCAGCTCAAGTATTCGCGATGCTGATCGTCAAGATGCAG
GAGTTCGGCAATCGAGCGGCCGAGGGCAACGACGGGCCAATCGTTTTGGG
GCAGAGCTCGGAGCAACAACTGGACGGAGCCAAAATTATAGAGTGTTCAT
CTGGAAACGCAAGTATCGACGACCTCGAATAGAAGCTTTCTAGACCAT
BS06092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom20-RB | 516 | CG7654-PB | 1..516 | 17..532 | 2580 | 100 | Plus |
Tom20-RA | 516 | CG7654-PA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom20-RB | 1008 | CG7654-RB | 206..721 | 17..532 | 2580 | 100 | Plus |
Tom20-RA | 743 | CG7654-RA | 80..595 | 17..532 | 2580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20001848..20002159 | 221..532 | 1560 | 100 | Plus |
3L | 28110227 | 3L | 20001167..20001298 | 17..148 | 660 | 100 | Plus |
3L | 28110227 | 3L | 20001361..20001436 | 147..222 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:06:02 has no hits.
BS06092.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:29 Download gff for
BS06092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:26 Download gff for
BS06092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 73..604 | 10..544 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:41 Download gff for
BS06092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 80..595 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:30 Download gff for
BS06092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 73..604 | 10..544 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:10 Download gff for
BS06092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 80..595 | 17..532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:10 Download gff for
BS06092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20001167..20001296 | 17..146 | 100 | -> | Plus |
3L | 20001361..20001436 | 147..222 | 100 | -> | Plus |
3L | 20001850..20002159 | 223..532 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:41 Download gff for
BS06092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19994267..19994396 | 17..146 | 100 | -> | Plus |
arm_3L | 19994461..19994536 | 147..222 | 100 | -> | Plus |
arm_3L | 19994950..19995259 | 223..532 | 100 | | Plus |
BS06092.pep Sequence
Translation from 16 to 531
> BS06092.pep
MIEMNKTAIGIAAGVAGTLFIGYCIYFDKKRRSDPEYKKKVRERRRRNKK
TGTAKSGVPNLNDHEAIERYFLQEIQLGETLIARGDFESGVEHLANAIVV
CGQPARLLQVLQSSLPAQVFAMLIVKMQEFGNRAAEGNDGPIVLGQSSEQ
QLDGAKIIECSSGNASIDDLE*
BS06092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom20-PB | 171 | CG7654-PB | 1..171 | 1..171 | 865 | 100 | Plus |
Tom20-PA | 171 | CG7654-PA | 1..171 | 1..171 | 865 | 100 | Plus |
tomboy20-PA | 147 | CG14690-PA | 10..128 | 11..130 | 328 | 47.5 | Plus |