Clone BS06095 Report

Search the DGRC for BS06095

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptMED31-RA
Protein status:BS06095.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06095.3prime Sequence

645 bp (644 high quality bases) assembled on 2005-12-03

> BS06095.3prime
ATGGTCTAGAAAGCTTCTAGTTTAACTCTAGTTTTATGTTGGCCCCCGAT
GCCACGCCATTGATTTGCTGCTGCTGCTGGGGATTTCCAGGCTGTGCTTG
GACAGGCTGTAGGGCAGAAGACGTCTGTTGACTATCCGCCGTGGAAGCTG
ACCCGTTCACGTTGGGGGTAGGTGCTGCTGATTCGCCTCCCGTTGCTGCC
TCCATGCCGTTCGCCTGCTGTTGTTGCTGCTGAAGCTGCTGTTGTTGCTG
CTGGGCGGCCGTAACGTTTTCGATCAGTTTGATGCGCTTGCGAGTGTAGT
GCTGCCACTGCAGAATGGCCTGGTCGTCTATGAACTTGCAGCACTGCGAG
TTGACGATCTCCCGGCGGAAGTGTTCGTACTGCAGCAGATCGAGGAAGTA
GAGGCACATTGGGTACATGAGGTATTTCGCATAGTCCGGCTCCTTCCAGT
ACTGCAGATACTTCAGGTAGTTGATGAACGACTGGTCCTTGAAAAATCCA
CGCTGTGCAAGGAAGTTTAGATAGTTGGGGTTCGACAGGCACTGCACGAA
CTCCAGCTCGATCTGCCAGCGTCGCTTCTGCAGCTCCTCCGACTCGATAG
CAGTCTTACCCTTTCCGTACATTTTGGCCATGTCGACTGATAACT

BS06095.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1057-PA 615 MED31-RA 1..615 631..17 3075 100 Minus
CG1057-PB 615 MED31-RB 1..615 631..17 3075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
MED31-RC 818 CG1057-RC 159..773 631..17 3075 100 Minus
MED31-RB 823 CG1057-RB 164..778 631..17 3075 100 Minus
MED31-RA 1098 CG1057-RA 439..1053 631..17 3075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4642751..4643247 513..17 2485 100 Minus
3R 32079331 3R 4642569..4642658 603..514 450 100 Minus
Blast to na_te.dros performed on 2015-02-09 01:41:44 has no hits.

BS06095.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:02 Download gff for BS06095.3prime
Subject Subject Range Query Range Percent Splice Strand
MED31-PA 1..615 17..631 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:40 Download gff for BS06095.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1057-PB 1..615 17..631 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:56:52 Download gff for BS06095.3prime
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 430..1057 12..639 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:10:18 Download gff for BS06095.3prime
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 430..1057 12..639 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:10:18 Download gff for BS06095.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4642392..4642428 604..639 91 -> Minus
3R 4642569..4642658 514..603 100 -> Minus
3R 4642751..4643251 12..513 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:56:52 Download gff for BS06095.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 468114..468150 604..639 91 -> Minus
arm_3R 468291..468380 514..603 100 -> Minus
arm_3R 468473..468973 12..513 99   Minus

BS06095.5prime Sequence

645 bp (644 high quality bases) assembled on 2005-12-03

> BS06095.5prime
GAAGTTATCAGTCGACATGGCCAAAATGTACGGAAAGGGTAAGACTGCTA
TCGAGTCGGAGGAGCTGCAGAAGCGACGCTGGCAGATCGAGCTGGAGTTC
GTGCAGTGCCTGTCGAACCCCAACTATCTAAACTTCCTTGCACAGCGTGG
ATTTTTCAAGGACCAGTCGTTCATCAACTACCTGAAGTATCTGCAGTACT
GGAAGGAGCCGGACTATGCGAAATACCTCATGTACCCAATGTGCCTCTAC
TTCCTCGATCTGCTGCAGTACGAACACTTCCGCCGGGAGATCGTCAACTC
GCAGTGCTGCAAGTTCATAGACGACCAGGCCATTCTGCAGTGGCAGCACT
ACACTCGCAAGCGCATCAAACTGATCGAAAACGTTACGGCCGCCCAGCAG
CAACAACAGCAGCTTCAGCAGCAACAACAGCAGGCGAACGGCATGGAGGC
AGCAACGGGAGGCGAATCAGCAGCACCTACCCCCAACGTGAACGGGTCAG
CTTCCACGGCGGATAGTCAACAGACGTCTTCTGCCCTACAGCCTGTCCAA
GCACAGCCTGGAAATCCCCAGCAGCAGCAGCAAATCAATGGCGTGGCATC
GGGGGCCAACATAAAACTAGAGTTAAACTAGAAGCTTTCTAGACC

BS06095.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1057-PA 615 MED31-RA 1..615 17..631 3075 100 Plus
CG1057-PB 615 MED31-RB 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
MED31-RC 818 CG1057-RC 159..773 17..631 3075 100 Plus
MED31-RB 823 CG1057-RB 164..778 17..631 3075 100 Plus
MED31-RA 1098 CG1057-RA 439..1053 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4642751..4643247 135..631 2485 100 Plus
3R 32079331 3R 4642569..4642658 45..134 450 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:21:20 has no hits.

BS06095.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:03 Download gff for BS06095.5prime
Subject Subject Range Query Range Percent Splice Strand
MED31-PA 1..615 17..631 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:42 Download gff for BS06095.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1057-PB 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:33:11 Download gff for BS06095.5prime
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 430..1057 9..636 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:57 Download gff for BS06095.5prime
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 430..1057 9..636 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:57 Download gff for BS06095.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4642392..4642428 9..44 91 -> Plus
3R 4642569..4642658 45..134 100 -> Plus
3R 4642751..4643251 135..636 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:33:11 Download gff for BS06095.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 468114..468150 9..44 91 -> Plus
arm_3R 468291..468380 45..134 100 -> Plus
arm_3R 468473..468973 135..636 99   Plus

BS06095.complete Sequence

647 bp (647 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635350

> BS06095.complete
GAAGTTATCAGTCGACATGGCCAAAATGTACGGAAAGGGTAAGACTGCTA
TCGAGTCGGAGGAGCTGCAGAAGCGACGCTGGCAGATCGAGCTGGAGTTC
GTGCAGTGCCTGTCGAACCCCAACTATCTAAACTTCCTTGCACAGCGTGG
ATTTTTCAAGGACCAGTCGTTCATCAACTACCTGAAGTATCTGCAGTACT
GGAAGGAGCCGGACTATGCGAAATACCTCATGTACCCAATGTGCCTCTAC
TTCCTCGATCTGCTGCAGTACGAACACTTCCGCCGGGAGATCGTCAACTC
GCAGTGCTGCAAGTTCATAGACGACCAGGCCATTCTGCAGTGGCAGCACT
ACACTCGCAAGCGCATCAAACTGATCGAAAACGTTACGGCCGCCCAGCAG
CAACAACAGCAGCTTCAGCAGCAACAACAGCAGGCGAACGGCATGGAGGC
AGCAACGGGAGGCGAATCAGCAGCACCTACCCCCAACGTGAACGGGTCAG
CTTCCACGGCGGATAGTCAACAGACGTCTTCTGCCCTACAGCCTGTCCAA
GCACAGCCTGGAAATCCCCAGCAGCAGCAGCAAATCAATGGCGTGGCATC
GGGGGCCAACATAAAACTAGAGTTAAACTAGAAGCTTTCTAGACCAT

BS06095.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
MED31-RC 615 CG1057-PC 1..615 17..631 3075 100 Plus
MED31-RB 615 CG1057-PB 1..615 17..631 3075 100 Plus
MED31-RA 615 CG1057-PA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
MED31-RC 818 CG1057-RC 159..773 17..631 3075 100 Plus
MED31-RB 823 CG1057-RB 164..778 17..631 3075 100 Plus
MED31-RA 1098 CG1057-RA 439..1053 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4642751..4643247 135..631 2485 100 Plus
3R 32079331 3R 4642569..4642658 45..134 450 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:37:05 has no hits.

BS06095.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:11 Download gff for BS06095.complete
Subject Subject Range Query Range Percent Splice Strand
MED31-RB 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:04 Download gff for BS06095.complete
Subject Subject Range Query Range Percent Splice Strand
MED31-RB 144..771 9..636 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:09 Download gff for BS06095.complete
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 439..1053 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:11 Download gff for BS06095.complete
Subject Subject Range Query Range Percent Splice Strand
MED31-RB 144..771 9..636 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:13 Download gff for BS06095.complete
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 439..1053 17..631 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:13 Download gff for BS06095.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4642569..4642658 45..134 100 -> Plus
3R 4642401..4642428 17..44 100 -> Plus
3R 4642751..4643247 135..631 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:09 Download gff for BS06095.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 468291..468380 45..134 100 -> Plus
arm_3R 468123..468150 17..44 100 -> Plus
arm_3R 468473..468969 135..631 100   Plus

BS06095.pep Sequence

Translation from 16 to 630

> BS06095.pep
MAKMYGKGKTAIESEELQKRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQ
SFINYLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKF
IDDQAILQWQHYTRKRIKLIENVTAAQQQQQQLQQQQQQANGMEAATGGE
SAAPTPNVNGSASTADSQQTSSALQPVQAQPGNPQQQQQINGVASGANIK
LELN*

BS06095.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
MED31-PC 204 CG1057-PC 1..204 1..204 1072 100 Plus
MED31-PB 204 CG1057-PB 1..204 1..204 1072 100 Plus
MED31-PA 204 CG1057-PA 1..204 1..204 1072 100 Plus
MED31-PD 202 CG1057-PD 1..202 1..204 1043 98.5 Plus
MED31-PE 199 CG1057-PE 6..199 11..204 1019 100 Plus