Clone Sequence Records
BS06095.3prime Sequence
645 bp (644 high quality bases) assembled on 2005-12-03
> BS06095.3prime
ATGGTCTAGAAAGCTTCTAGTTTAACTCTAGTTTTATGTTGGCCCCCGAT
GCCACGCCATTGATTTGCTGCTGCTGCTGGGGATTTCCAGGCTGTGCTTG
GACAGGCTGTAGGGCAGAAGACGTCTGTTGACTATCCGCCGTGGAAGCTG
ACCCGTTCACGTTGGGGGTAGGTGCTGCTGATTCGCCTCCCGTTGCTGCC
TCCATGCCGTTCGCCTGCTGTTGTTGCTGCTGAAGCTGCTGTTGTTGCTG
CTGGGCGGCCGTAACGTTTTCGATCAGTTTGATGCGCTTGCGAGTGTAGT
GCTGCCACTGCAGAATGGCCTGGTCGTCTATGAACTTGCAGCACTGCGAG
TTGACGATCTCCCGGCGGAAGTGTTCGTACTGCAGCAGATCGAGGAAGTA
GAGGCACATTGGGTACATGAGGTATTTCGCATAGTCCGGCTCCTTCCAGT
ACTGCAGATACTTCAGGTAGTTGATGAACGACTGGTCCTTGAAAAATCCA
CGCTGTGCAAGGAAGTTTAGATAGTTGGGGTTCGACAGGCACTGCACGAA
CTCCAGCTCGATCTGCCAGCGTCGCTTCTGCAGCTCCTCCGACTCGATAG
CAGTCTTACCCTTTCCGTACATTTTGGCCATGTCGACTGATAACT
BS06095.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1057-PA | 615 | MED31-RA | 1..615 | 631..17 | 3075 | 100 | Minus |
CG1057-PB | 615 | MED31-RB | 1..615 | 631..17 | 3075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-RC | 818 | CG1057-RC | 159..773 | 631..17 | 3075 | 100 | Minus |
MED31-RB | 823 | CG1057-RB | 164..778 | 631..17 | 3075 | 100 | Minus |
MED31-RA | 1098 | CG1057-RA | 439..1053 | 631..17 | 3075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4642751..4643247 | 513..17 | 2485 | 100 | Minus |
3R | 32079331 | 3R | 4642569..4642658 | 603..514 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:41:44 has no hits.
BS06095.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:02 Download gff for
BS06095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-PA | 1..615 | 17..631 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:40 Download gff for
BS06095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1057-PB | 1..615 | 17..631 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:56:52 Download gff for
BS06095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 430..1057 | 12..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:10:18 Download gff for
BS06095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 430..1057 | 12..639 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:10:18 Download gff for
BS06095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4642392..4642428 | 604..639 | 91 | -> | Minus |
3R | 4642569..4642658 | 514..603 | 100 | -> | Minus |
3R | 4642751..4643251 | 12..513 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:56:52 Download gff for
BS06095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 468114..468150 | 604..639 | 91 | -> | Minus |
arm_3R | 468291..468380 | 514..603 | 100 | -> | Minus |
arm_3R | 468473..468973 | 12..513 | 99 | | Minus |
BS06095.5prime Sequence
645 bp (644 high quality bases) assembled on 2005-12-03
> BS06095.5prime
GAAGTTATCAGTCGACATGGCCAAAATGTACGGAAAGGGTAAGACTGCTA
TCGAGTCGGAGGAGCTGCAGAAGCGACGCTGGCAGATCGAGCTGGAGTTC
GTGCAGTGCCTGTCGAACCCCAACTATCTAAACTTCCTTGCACAGCGTGG
ATTTTTCAAGGACCAGTCGTTCATCAACTACCTGAAGTATCTGCAGTACT
GGAAGGAGCCGGACTATGCGAAATACCTCATGTACCCAATGTGCCTCTAC
TTCCTCGATCTGCTGCAGTACGAACACTTCCGCCGGGAGATCGTCAACTC
GCAGTGCTGCAAGTTCATAGACGACCAGGCCATTCTGCAGTGGCAGCACT
ACACTCGCAAGCGCATCAAACTGATCGAAAACGTTACGGCCGCCCAGCAG
CAACAACAGCAGCTTCAGCAGCAACAACAGCAGGCGAACGGCATGGAGGC
AGCAACGGGAGGCGAATCAGCAGCACCTACCCCCAACGTGAACGGGTCAG
CTTCCACGGCGGATAGTCAACAGACGTCTTCTGCCCTACAGCCTGTCCAA
GCACAGCCTGGAAATCCCCAGCAGCAGCAGCAAATCAATGGCGTGGCATC
GGGGGCCAACATAAAACTAGAGTTAAACTAGAAGCTTTCTAGACC
BS06095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1057-PA | 615 | MED31-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
CG1057-PB | 615 | MED31-RB | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-RC | 818 | CG1057-RC | 159..773 | 17..631 | 3075 | 100 | Plus |
MED31-RB | 823 | CG1057-RB | 164..778 | 17..631 | 3075 | 100 | Plus |
MED31-RA | 1098 | CG1057-RA | 439..1053 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4642751..4643247 | 135..631 | 2485 | 100 | Plus |
3R | 32079331 | 3R | 4642569..4642658 | 45..134 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:21:20 has no hits.
BS06095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:03 Download gff for
BS06095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-PA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:42 Download gff for
BS06095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1057-PB | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:33:11 Download gff for
BS06095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 430..1057 | 9..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:57 Download gff for
BS06095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 430..1057 | 9..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:57 Download gff for
BS06095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4642392..4642428 | 9..44 | 91 | -> | Plus |
3R | 4642569..4642658 | 45..134 | 100 | -> | Plus |
3R | 4642751..4643251 | 135..636 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:33:11 Download gff for
BS06095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 468114..468150 | 9..44 | 91 | -> | Plus |
arm_3R | 468291..468380 | 45..134 | 100 | -> | Plus |
arm_3R | 468473..468973 | 135..636 | 99 | | Plus |
BS06095.complete Sequence
647 bp (647 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635350
> BS06095.complete
GAAGTTATCAGTCGACATGGCCAAAATGTACGGAAAGGGTAAGACTGCTA
TCGAGTCGGAGGAGCTGCAGAAGCGACGCTGGCAGATCGAGCTGGAGTTC
GTGCAGTGCCTGTCGAACCCCAACTATCTAAACTTCCTTGCACAGCGTGG
ATTTTTCAAGGACCAGTCGTTCATCAACTACCTGAAGTATCTGCAGTACT
GGAAGGAGCCGGACTATGCGAAATACCTCATGTACCCAATGTGCCTCTAC
TTCCTCGATCTGCTGCAGTACGAACACTTCCGCCGGGAGATCGTCAACTC
GCAGTGCTGCAAGTTCATAGACGACCAGGCCATTCTGCAGTGGCAGCACT
ACACTCGCAAGCGCATCAAACTGATCGAAAACGTTACGGCCGCCCAGCAG
CAACAACAGCAGCTTCAGCAGCAACAACAGCAGGCGAACGGCATGGAGGC
AGCAACGGGAGGCGAATCAGCAGCACCTACCCCCAACGTGAACGGGTCAG
CTTCCACGGCGGATAGTCAACAGACGTCTTCTGCCCTACAGCCTGTCCAA
GCACAGCCTGGAAATCCCCAGCAGCAGCAGCAAATCAATGGCGTGGCATC
GGGGGCCAACATAAAACTAGAGTTAAACTAGAAGCTTTCTAGACCAT
BS06095.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-RC | 615 | CG1057-PC | 1..615 | 17..631 | 3075 | 100 | Plus |
MED31-RB | 615 | CG1057-PB | 1..615 | 17..631 | 3075 | 100 | Plus |
MED31-RA | 615 | CG1057-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-RC | 818 | CG1057-RC | 159..773 | 17..631 | 3075 | 100 | Plus |
MED31-RB | 823 | CG1057-RB | 164..778 | 17..631 | 3075 | 100 | Plus |
MED31-RA | 1098 | CG1057-RA | 439..1053 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4642751..4643247 | 135..631 | 2485 | 100 | Plus |
3R | 32079331 | 3R | 4642569..4642658 | 45..134 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:37:05 has no hits.
BS06095.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:11 Download gff for
BS06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RB | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:04 Download gff for
BS06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RB | 144..771 | 9..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:09 Download gff for
BS06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 439..1053 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:11 Download gff for
BS06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RB | 144..771 | 9..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:13 Download gff for
BS06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 439..1053 | 17..631 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:13 Download gff for
BS06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4642569..4642658 | 45..134 | 100 | -> | Plus |
3R | 4642401..4642428 | 17..44 | 100 | -> | Plus |
3R | 4642751..4643247 | 135..631 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:09 Download gff for
BS06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 468291..468380 | 45..134 | 100 | -> | Plus |
arm_3R | 468123..468150 | 17..44 | 100 | -> | Plus |
arm_3R | 468473..468969 | 135..631 | 100 | | Plus |
BS06095.pep Sequence
Translation from 16 to 630
> BS06095.pep
MAKMYGKGKTAIESEELQKRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQ
SFINYLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKF
IDDQAILQWQHYTRKRIKLIENVTAAQQQQQQLQQQQQQANGMEAATGGE
SAAPTPNVNGSASTADSQQTSSALQPVQAQPGNPQQQQQINGVASGANIK
LELN*
BS06095.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-PC | 204 | CG1057-PC | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PB | 204 | CG1057-PB | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PA | 204 | CG1057-PA | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PD | 202 | CG1057-PD | 1..202 | 1..204 | 1043 | 98.5 | Plus |
MED31-PE | 199 | CG1057-PE | 6..199 | 11..204 | 1019 | 100 | Plus |