Clone Sequence Records
BS06101.3prime Sequence
905 bp (853 high quality bases) assembled on 2005-12-03
> BS06101.3prime
ATGGTCTAGAAAGCTTCTATTTGCGCGTTTTCTTCATCGAGAAACCGGTG
CCGTGGAAGCTCTCCGCATCGGAAGCGTCCGCATTGCCAGCTACGGCATC
ATCTTCTTGGCTTCTATCACTGATAGGCCGAATGTTGCGATCGAAACGGA
TGAGTCCAAACTGGAAATCATAGTCTGGAACGCCGCGGGCTAGCACCTTC
TTAACGACCGGCGTTTCCAACTGGCTTTCCTTCTTCTTCTTACCATCGAG
ACGTACGCCGGAACCCTTGAAGGTCTCCACGACCTCTTCGAGTATGGCGT
TGGTGGCTCCAGCGATTTCGCCGCCAACAGTTCCAGCAGCACCCTGCTGC
CCAGAGCCCGATGCCTGCGTTTCGGAGTGATCCTTGTAGCCGACTGGCGC
CTCAAATTCCACATTCATGTCGCACTCAATGATGCTGACTGCATTGCCGG
GCTTTGTCTCCAGGACACACAGTTCGTAGACCTTCTTGTTGTACTTAATG
GCTATGACATCGCCCCTGGTGAGGCAGGCAAAGTTGCGCAATGCATTCTC
CAGCACCGCCTTGGGATTGGTGATGTCCAGGAAGTCGGTGCTGTGCGGTT
GAAACTTTGAGAAGGTGGCCACCGGCAGCGAGACACTCTCGATGTTGAGT
ATGTCGCCCTCACCCAACAGCAGGTTTTCCATCATCCAGTGGGGTAGATA
GCATTTGCCCTCGTCGGCCACAAACTCGAGTACGCCGGCATGCGAGGATC
GCGATTTCTTGACGTTGGTCAGCTTGAACAGCATTGGATACTCGACATTC
AGGCGGGTGAGCGTGTCCAGCGCCGAGGGAGGCATAATAATCTTTCCGCC
CTTTTCCACGTCGGTTCGCTCGTTTCCTGGCAACATGGATACGGAGAAGC
ACTTG
BS06101.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6233-PA | 951 | Ufd1-like-RA | 63..951 | 905..17 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-RA | 1194 | CG6233-RA | 231..1119 | 905..17 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11122041..11122864 | 17..840 | 4120 | 100 | Plus |
| 3L | 28110227 | 3L | 11122922..11122986 | 841..905 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:26:25 has no hits.
BS06101.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:06 Download gff for
BS06101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6233-PA | 63..951 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:46 Download gff for
BS06101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6233-PA | 63..951 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:52 Download gff for
BS06101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 231..1121 | 12..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:58 Download gff for
BS06101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 231..1121 | 12..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:58 Download gff for
BS06101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11122037..11122864 | 12..840 | 99 | <- | Plus |
| 3L | 11122922..11122986 | 841..905 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:52 Download gff for
BS06101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11115137..11115964 | 12..840 | 99 | <- | Plus |
| arm_3L | 11116022..11116086 | 841..905 | 100 | | Plus |
BS06101.5prime Sequence
837 bp (713 high quality bases) assembled on 2005-12-03
> BS06101.5prime
GAAGTTATCAGTCGACATGTTCCACTTCAGCGGCTTCAACATGATGTTCC
CGGAGGGACGCAATTTTCATGCCAACTACAAGTGCTTCTCCGTATCCATG
TTGCCAGGAAACGAGCGAACCGACGTGGAAAAGGGCGGAAAGATTATTAT
GCCTCCCTCGGCGCTGGACACGCTCACCCGCCTGAATGTCGAGTATCCAA
TGCTGTTCAAGCTGACCAACGTCAAGAAATCGCGATCCTCGCATGCCGGC
GTACTCGAGTTTGTGGCCGACGAGGGCAAATGCTATCTACCCCACTGGAT
GATGGAAAACCTGCTGTTGGGTGAGGGCGACATACTCAACATCGAGAGTG
TCTCGCTGCCGGTGGCCACCTTCTCAAAGTTTCAACCGCACAGCACCGAC
TTCCTGGACATCACCAATCCCAAGGCGGTGCTGGAGAATGCATTGCGCAA
CTTTGCCTGCCTCACCAGGGGCGATGTCATAGCCATTAAGTACAACAAGA
AGGTCTACGAACTGTGTGTCCTGGAGACAAAGCCCGGCAATGCAGTCAGC
ATCATTGAGTGCGACATGAATGTGGAATTTGAGGCGCCAGTCGGCTACAA
GGATCACTCCGAAACGCAGGCATCGGGCTCTGGGCAGCAGGGTGCTGCTG
GAACTGTTGGCGGCGAAATCGCTGGAGCCACCAACGCCATACTCGAAGAG
GTCGTGGAGACCTTCAAGGGTTCCGGCGTACGTCTCGATGGTAAGAAGAA
GAAGGAAAGCCAGTTGGAAACGCCGGTCGTTAAGAANGTGCTAGCCCGCG
GCGTTCCAGACTATGATTTCCAGTTTGGACTCATCCG
BS06101.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6233-PA | 951 | Ufd1-like-RA | 1..821 | 17..837 | 4086 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-RA | 1194 | CG6233-RA | 169..989 | 17..837 | 4094 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11122171..11122864 | 837..144 | 3459 | 99.9 | Minus |
| 3L | 28110227 | 3L | 11122922..11123048 | 143..17 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:08:03 has no hits.
BS06101.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:07 Download gff for
BS06101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6233-PA | 1..821 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:47 Download gff for
BS06101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6233-PA | 1..821 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:08:07 Download gff for
BS06101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 163..989 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:34:37 Download gff for
BS06101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 163..989 | 9..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:34:37 Download gff for
BS06101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11122171..11122864 | 144..837 | 99 | <- | Minus |
| 3L | 11122922..11123054 | 9..143 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:08:07 Download gff for
BS06101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11115271..11115964 | 144..837 | 99 | <- | Minus |
| arm_3L | 11116022..11116154 | 9..143 | 97 | | Minus |
BS06101.complete Sequence
983 bp (983 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635351
> BS06101.complete
GAAGTTATCAGTCGACATGTTCCACTTCAGCGGCTTCAACATGATGTTCC
CGGAGGGACGCAATTTTCATGCCAACTACAAGTGCTTCTCCGTATCCATG
TTGCCAGGAAACGAGCGAACCGACGTGGAAAAGGGCGGAAAGATTATTAT
GCCTCCCTCGGCGCTGGACACGCTCACCCGCCTGAATGTCGAGTATCCAA
TGCTGTTCAAGCTGACCAACGTCAAGAAATCGCGATCCTCGCATGCCGGC
GTACTCGAGTTTGTGGCCGACGAGGGCAAATGCTATCTACCCCACTGGAT
GATGGAAAACCTGCTGTTGGGTGAGGGCGACATACTCAACATCGAGAGTG
TCTCGCTGCCGGTGGCCACCTTCTCAAAGTTTCAACCGCACAGCACCGAC
TTCCTGGACATCACCAATCCCAAGGCGGTGCTGGAGAATGCATTGCGCAA
CTTTGCCTGCCTCACCAGGGGCGATGTCATAGCCATTAAGTACAACAAGA
AGGTCTACGAACTGTGTGTCCTGGAGACAAAGCCCGGCAATGCAGTCAGC
ATCATTGAGTGCGACATGAATGTGGAATTTGAGGCGCCAGTCGGCTACAA
GGATCACTCCGAAACGCAGGCATCGGGCTCTGGGCAGCAGGGTGCTGCTG
GAACTGTTGGCGGCGAAATCGCTGGAGCCACCAACGCCATACTCGAAGAG
GTCGTGGAGACCTTCAAGGGTTCCGGCGTACGTCTCGATGGTAAGAAGAA
GAAGGAAAGCCAGTTGGAAACGCCGGTCGTTAAGAAGGTGCTAGCCCGCG
GCGTTCCAGACTATGATTTCCAGTTTGGACTCATCCGTTTCGATCGCAAC
ATTCGGCCTATCAGTGATAGAAGCCAAGAAGATGATGCCGTAGCTGGCAA
TGCGGACGCTTCCGATGCGGAGAGCTTCCACGGCACCGGTTTCTCGATGA
AGAAAACGCGCAAATAGAAGCTTTCTAGACCAT
BS06101.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-RA | 951 | CG6233-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-RA | 1194 | CG6233-RA | 169..1119 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11122041..11122864 | 967..144 | 4120 | 100 | Minus |
| 3L | 28110227 | 3L | 11122922..11123048 | 143..17 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:01:17 has no hits.
BS06101.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:12 Download gff for
BS06101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:06 Download gff for
BS06101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 148..1106 | 9..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:12 Download gff for
BS06101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 174..1113 | 22..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:13 Download gff for
BS06101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 148..1106 | 9..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:54 Download gff for
BS06101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 174..1113 | 22..961 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:54 Download gff for
BS06101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11122047..11122864 | 144..961 | 100 | <- | Minus |
| 3L | 11122922..11123043 | 22..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:12 Download gff for
BS06101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11115147..11115964 | 144..961 | 100 | <- | Minus |
| arm_3L | 11116022..11116143 | 22..143 | 100 | | Minus |
BS06101.pep Sequence
Translation from 16 to 966
> BS06101.pep
MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSAL
DTLTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLL
LGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLT
RGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHSET
QASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRLDGKKKKESQL
ETPVVKKVLARGVPDYDFQFGLIRFDRNIRPISDRSQEDDAVAGNADASD
AESFHGTGFSMKKTRK*
BS06101.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-PA | 316 | CG6233-PA | 1..316 | 1..316 | 1643 | 100 | Plus |
