Clone Sequence Records
BS06102.3prime Sequence
914 bp (787 high quality bases) assembled on 2005-12-03
> BS06102.3prime
ATGGTCTAGAAAGCTTCTAATTTTTGGCCAGCTGCTGCTTAATCCAGTCC
AGGTAGAAGTGAACCCGTGTGTACATCGCGGGAAGATCGGGTGTGTCGCA
GGCCACTCCGATGGATGTGATACCCATCACATGGTACATGCAGGGGTAGT
CCATGTGATAGATGAGCACCGGTCCGCCGGAATCGCCGTTGCAGGTGTCC
TTGTGCTCGTTGGACCCGATGCACAGTTGGGTGGTAGCATTATATCCCTC
GGGTAGCTCATCATTTCTATCCGCCGTAATCCTGCAGCGCGTTCCATAGT
TGTAGAGCTTCACTTTCTGTAGCTTTTTGTTCTCCGTCCTGGGCACGATC
TCCAGCTGACCCCAACCGATGGCTATGAAGGAGGTCCCCAATCGCCCATC
GTCGAAGGGTAGACAGGCCGGATGCTTGTAATCGTTGAAGGTTACGGGTC
GACTCAATCGTACCACGGAAATGTCGTTGTAAATCGCCGGGTAGCTAAAT
TCGGGGTGCGCGGTGAAGTCCTTCACATCGAAGTCCTCCGGATCCGCATC
GTCGTTGTTGGTGTCGAATTCCAGGTCCCCGAGGCGCGCGATGTTCACTG
ATCCTTGTGGTGAGTAGTGGCAATGCGCTGCGGTGAGCACATGTCTGTCG
CTGATAAGTGTTCCGCCACAGAACCATTCCACCTCGCCATTCTCATCTTT
GTGTCCCAGGCGCGCAGCATGCGGGAACTCCTTGGGCACGGCGGGTCCTC
CGCCGATGATGAGCGGCGCATAGCTAGTGCATTTGTCCAGGGTCTTGTAG
ATAATCGGAGCGTTCTCGATCAGAAAGCTGAACTCGGACGTCTCCTCCCA
AACGCTTCTCTTGTANGCAGTGCACGTCCTGGCTATATCCGAATCCTGAG
CTGACGCCCATGCG
BS06102.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-PA | 960 | CG11842-RA | 63..960 | 914..17 | 4471 | 99.8 | Minus |
CG8299-PA | 783 | CG8299-RA | 615..647 | 203..171 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-RA | 1118 | CG11842-RA | 84..983 | 914..15 | 4489 | 99.9 | Minus |
CG11841-RA | 1076 | CG11841-RA | 756..869 | 230..117 | 225 | 80.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29053188..29053778 | 605..15 | 2955 | 100 | Minus |
3R | 32079331 | 3R | 29052852..29053122 | 876..606 | 1344 | 99.6 | Minus |
3R | 32079331 | 3R | 29051947..29052060 | 230..117 | 225 | 79.8 | Minus |
3R | 32079331 | 3R | 29052763..29052800 | 914..877 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:57:07 has no hits.
BS06102.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:09 Download gff for
BS06102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-PA | 63..960 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:48 Download gff for
BS06102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-PA | 63..960 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:17:48 Download gff for
BS06102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 84..989 | 7..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:14 Download gff for
BS06102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 84..989 | 7..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:14 Download gff for
BS06102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29052763..29052800 | 877..914 | 100 | -> | Minus |
3R | 29052852..29053122 | 606..876 | 99 | -> | Minus |
3R | 29053188..29053784 | 7..605 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:17:48 Download gff for
BS06102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24878485..24878522 | 877..914 | 100 | -> | Minus |
arm_3R | 24878574..24878844 | 606..876 | 99 | -> | Minus |
arm_3R | 24878910..24879506 | 7..605 | 99 | | Minus |
BS06102.5prime Sequence
927 bp (777 high quality bases) assembled on 2005-12-03
> BS06102.5prime
GAAGTTATCAGTCGACATGAGCAGCGCGATCTTCGCCAAGATTGTCCAGC
TGGGAGCAGTATTGCTGGTTTCATTCGTCGCATGGGCGTCAGCTCAGGAT
TCGGATATAGCCAGGACGTGCACTGCCTACAAGAGAAGCGTTTGGGAGGA
GACGTCCGAGTTCAGCTTTCTGATCGAGAACGCTCCGATTATCTACAAGA
CCCTGGACAAATGCACTAGCTATGCGCCGCTCATCATCGGCGGAGGACCC
GCCGTGCCCAAGGAGTTCCCGCATGCTGCGCGCCTGGGACACAAAGATGA
GAATGGCGAGGTGGAATGGTTCTGTGGCGGAACACTTATCAGCGACAGAC
ATGTGCTCACCGCAGCGCATTGCCACTACTCACCACAAGGATCAGTGAAC
ATCGCGCGCCTCGGGGACCTGGAATTCGACACCAACAACGACGATGCGGA
TCCGGAGGACTTCGATGTGAAGGACTTCACCGCGCACCCCGAATTTAGCT
ACCCGGCGATTTACAACGACATTTCCGTGGTACGATTGAGTCGACCCGTA
ACCTTCAACGATTACAAGCATCCGGCCTGTCTACCCTTCGACGATGGGCG
ATTGGGGACCTCCTTCATAGCCATCGGTTGGGGTCAGCTGGAGATCGTGC
CCAGGACGGAGAACAAAAAGCTACAGAAAGTGAAGCTCTACAACTATGGA
ACGCGCTGCAGGATTACGGCGGATAGAAATGATGAGCTACCCGAGGGATA
TAATGCTACCACCCAACTGTGCATCGGGTCCAACGAGCACAAAGACACCT
GCAACGGCGATTCCGGCGGACCGGTGCTCATCTATCACATGGACTACCCC
TGCATGTACCATGTGATGGGTATCACATCCATCGGAGTGGCCTGCGACAC
ACCCGATCTTCCCGCGATGTACACACG
BS06102.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-PA | 960 | CG11842-RA | 1..911 | 17..927 | 4530 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-RA | 1118 | CG11842-RA | 22..932 | 17..927 | 4540 | 99.9 | Plus |
CG11841-RA | 1076 | CG11841-RA | 756..869 | 763..876 | 210 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29053188..29053727 | 388..927 | 2685 | 99.8 | Plus |
3R | 32079331 | 3R | 29052852..29053122 | 117..387 | 1355 | 100 | Plus |
3R | 32079331 | 3R | 29052701..29052800 | 17..116 | 500 | 100 | Plus |
3R | 32079331 | 3R | 29051947..29052060 | 763..876 | 210 | 78.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:41:32 has no hits.
BS06102.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:10 Download gff for
BS06102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:50 Download gff for
BS06102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:41 Download gff for
BS06102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 16..932 | 9..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:43 Download gff for
BS06102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 16..932 | 9..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:43 Download gff for
BS06102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29052852..29053122 | 117..387 | 100 | -> | Plus |
3R | 29052695..29052800 | 9..116 | 96 | -> | Plus |
3R | 29053188..29053727 | 388..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:41 Download gff for
BS06102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24878417..24878522 | 9..116 | 96 | -> | Plus |
arm_3R | 24878574..24878844 | 117..387 | 100 | -> | Plus |
arm_3R | 24878910..24879449 | 388..927 | 99 | | Plus |
BS06102.complete Sequence
992 bp (992 high quality bases) assembled on 2005-12-09
> BS06102.complete
GAAGTTATCAGTCGACATGAGCAGCGCGATCTTCGCCAAGATTGTCCAGC
TGGGAGCAGTATTGCTGGTTTCATTCGTCGCATGGGCGTCAGCTCAGGAT
TCGGATATAGCCAGGACGTGCACTGCCTACAAGAGAAGCGTTTGGGAGGA
GACGTCCGAGTTCAGCTTTCTGATCGAGAACGCTCCGATTATCTACAAGA
CCCTGGACAAATGCACTAGCTATGCGCCGCTCATCATCGGCGGAGGACCC
GCCGTGCCCAAGGAGTTCCCGCATGCTGCGCGCCTGGGACACAAAGATGA
GAATGGCGAGGTGGAATGGTTCTGTGGCGGAACACTTATCAGCGACAGAC
ATGTGCTCACCGCAGCGCATTGCCACTACTCACCACAAGGATCAGTGAAC
ATCGCGCGCCTCGGGGACCTGGAATTCGACACCAACAACGACGATGCGGA
TCCGGAGGACTTCGATGTGAAGGACTTCACCGCGCACCCCGAATTTAGCT
ACCCGGCGATTTACAACGACATTTCCGTGGTACGATTGAGTCGACCCGTA
ACCTTCAACGATTACAAGCATCCGGCCTGTCTACCCTTCGACGATGGGCG
ATTGGGGACCTCCTTCATAGCCATCGGTTGGGGTCAGCTGGAGATCGTGC
CCAGGACGGAGAACAAAAAGCTACAGAAAGTGAAGCTCTACAACTATGGA
ACGCGCTGCAGGATTACGGCGGATAGAAATGATGAGCTACCCGAGGGATA
TAATGCTACCACCCAACTGTGCATCGGGTCCAACGAGCACAAGGACACCT
GCAACGGCGATTCCGGCGGACCGGTGCTCATCTATCACATGGACTACCCC
TGCATGTACCATGTGATGGGTATCACATCCATCGGAGTGGCCTGCGACAC
ACCCGATCTTCCCGCGATGTACACACGGGTTCACTTCTACCTGGACTGGA
TTAAGCAGCAGCTGGCCAAAAATTAGAAGCTTTCTAGACCAT
BS06102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-RA | 960 | CG11842-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
CG11841-RA | 960 | CG11841-PA | 741..854 | 763..876 | 225 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-RA | 1118 | CG11842-RA | 22..983 | 17..978 | 4810 | 100 | Plus |
CG11841-RA | 1076 | CG11841-RA | 756..869 | 763..876 | 225 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29053188..29053778 | 388..978 | 2955 | 100 | Plus |
3R | 32079331 | 3R | 29052852..29053122 | 117..387 | 1355 | 100 | Plus |
3R | 32079331 | 3R | 29052701..29052800 | 17..116 | 500 | 100 | Plus |
3R | 32079331 | 3R | 29051947..29052060 | 763..876 | 225 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:42:44 has no hits.
BS06102.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:14 Download gff for
BS06102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 1..960 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:08 Download gff for
BS06102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 16..989 | 9..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:04 Download gff for
BS06102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 22..981 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:14 Download gff for
BS06102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 16..989 | 9..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:36 Download gff for
BS06102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 22..981 | 17..976 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:36 Download gff for
BS06102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29052701..29052800 | 17..116 | 100 | -> | Plus |
3R | 29052852..29053122 | 117..387 | 100 | -> | Plus |
3R | 29053188..29053776 | 388..976 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:04 Download gff for
BS06102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24878423..24878522 | 17..116 | 100 | -> | Plus |
arm_3R | 24878574..24878844 | 117..387 | 100 | -> | Plus |
arm_3R | 24878910..24879498 | 388..976 | 100 | | Plus |
BS06102.pep Sequence
Translation from 16 to 975
> BS06102.pep
MSSAIFAKIVQLGAVLLVSFVAWASAQDSDIARTCTAYKRSVWEETSEFS
FLIENAPIIYKTLDKCTSYAPLIIGGGPAVPKEFPHAARLGHKDENGEVE
WFCGGTLISDRHVLTAAHCHYSPQGSVNIARLGDLEFDTNNDDADPEDFD
VKDFTAHPEFSYPAIYNDISVVRLSRPVTFNDYKHPACLPFDDGRLGTSF
IAIGWGQLEIVPRTENKKLQKVKLYNYGTRCRITADRNDELPEGYNATTQ
LCIGSNEHKDTCNGDSGGPVLIYHMDYPCMYHVMGITSIGVACDTPDLPA
MYTRVHFYLDWIKQQLAKN*
BS06102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-PA | 319 | CG11842-PA | 1..319 | 1..319 | 1731 | 100 | Plus |
CG11841-PA | 319 | CG11841-PA | 34..316 | 35..318 | 967 | 61.6 | Plus |
CG11843-PB | 316 | CG11843-PB | 2..314 | 8..317 | 814 | 50 | Plus |
CG11843-PA | 316 | CG11843-PA | 2..314 | 8..317 | 814 | 50 | Plus |
CG4927-PC | 362 | CG4927-PC | 103..356 | 71..313 | 455 | 38.5 | Plus |