Clone Sequence Records
BS06103.3prime Sequence
950 bp (826 high quality bases) assembled on 2005-12-03
> BS06103.3prime
ATGGTCTAGAAAGCTTTTAGGCCAGTCGGGCGAGGAAAGTGGCCATTAGC
AGGCTCGCAGAGGTCCAGGTGAGATGAAGGGATACGGATGAGCCGGACTG
GGATCCACTGGTCAAGGGCAGGGCTCTGCGGTGCTGCAGCTTGACCCTGT
CGATGTGGGGCTGGCAGGAGGACTCCTTCCTCACGTATCGAAACATGGAC
TCCACGATATTGCTGGGAGTGATCGTATCGCACTTCTCCAGCAGACTGAC
GGTGCACGTCTCGAATGCGTAGAGGTCGACGCACTGCTTCGGACCCAAGA
CCAGCTGGGGCAGATCCCACTCCGGGCTAATCGACTTGGGCAGATATCCG
GCGAAGGAAGAGTTCAGGCAATTGGCGATGCCTTCGCGACTCTGCTGCAG
GCACTCCGGGCCCTCTTCGGCGATAAAGAGCGCAATCTGGTCTCCGTTCT
TGTAGCATATGAACTCCAGCAGCTTGTCCGCAATCCTCTGCAGCACCGCG
TTGTGGGTCTTCTCATCGGTGGTCAGGCAGGGCAGGATCGCGTCGTTGAA
GTTCTTCAGACAGGTCTTGGCCTGCGGCAATCGGAGGCAATACTTCTCGA
AGACCACGTCCAGGTCGCCCTTGGGACTCGCCTCCTCGATCTCCGCCTGG
ATCTCCGTCATATTGGCCAATCCGGAGAGGCATTCTGCGAGGTGAATGCC
CGCATCCTCGATGGACTTGCTCAGGGCAGAGGCGTTTACAGATCCTTTCG
GCAAATGGTCATTGGCCTTCTCGCACTTCGACTGCAGCCACTTTTGGAAG
TCGGCCAAGGTCACATTGGTGTTTTGCAGGCCTTGGGGCAGATAGTTTGA
CCTTAGCTGGGTCACATCCACGTTCTCCAGCAGCGACGGATCCAGGGGAC
CCAGCCAATCCACAGATCCAAGCACGGCGTGAACCGCGAAGGCCAGTTAA
BS06103.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14629-PA | 960 | CG14629-RA | 80..960 | 897..17 | 4330 | 99.6 | Minus |
CG14629-PA | 960 | CG14629-RA | 30..70 | 947..907 | 205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14629-RA | 1107 | CG14629-RA | 45..975 | 947..17 | 4550 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1051569..1052499 | 947..17 | 4535 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:08:04 has no hits.
BS06103.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:11 Download gff for
BS06103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-PA | 29..960 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:51 Download gff for
BS06103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-PA | 29..960 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:41 Download gff for
BS06103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-RA | 42..979 | 11..950 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:28 Download gff for
BS06103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-RA | 42..979 | 11..950 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:28 Download gff for
BS06103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1051566..1052503 | 11..950 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:41 Download gff for
BS06103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 945599..946536 | 11..950 | 98 | | Minus |
BS06103.5prime Sequence
778 bp (777 high quality bases) assembled on 2005-12-03
> BS06103.5prime
GAAGTTATCAGTCGACATGTCGAGCTGGTCGCTTTGTCCGCTTTTACTGG
CCTTCGCGGTTCACGCCGTGCTTGGATCTGTGGATTTGGCTGGTTCCCTG
GATCCGTCGCTGCTGGAGAACGTGGATGTGGACCAGCTAAGGTCAAACTA
TCTGCCCCAAGGCCTGCAAAACACCAATGTGACCTTGGCCGACTTCCAAA
AGTGGCTGCAGTCGAAGTGCGAGAAGGCCAATGACCATTTGCCGAAAGGA
TCTGTTAACGCCTCTGCCCTGAGCAAGTCCATCGAGGATGCGGGCATTCA
CCTCGCAGAATGCCTCTCCGGATTGGCCAATATGACGGAGATCCAGGCGG
AGATCGAGGAGGCGAGTCCCAAGGGCGACCTGGACGTGGTCTTCGAGAAG
TATTGCCTCCGATTGCCGCAGGCCAAGACCTGTCTGAAGAACTTCAACGA
CGCGATCCTGCCCTGCCTGACCACCGATGAGAAGACCCACAACGCGGTGC
TGCAGAGGATTGCGGACAAGCTGCTGGAGTTCATATGCTACAAGAACGGA
GACCAGATTGCGCTCTTTATCGCCGAAGAGGGCCCGGAGTGCCTGCAGCA
GAGTCGCGAAGGCATCGCCAATTGCCTGAACTCTTCCTTCGCCGGATATC
TGCCCAAGTCGATTAGCCCGGAGTGGGATCTGCCCCAGCTGGTCTTGGGT
CCGAAGCAGTGCGTCGACCTCTACGCATTCGAGACGTGCACCGTCAGTCT
GCTGGAGAAGTGCGATACGATCACTCCC
BS06103.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14629-PA | 960 | CG14629-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14629-RA | 1107 | CG14629-RA | 16..777 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1051540..1052301 | 17..778 | 3810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:34:32 has no hits.
BS06103.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:12 Download gff for
BS06103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:52 Download gff for
BS06103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:14:55 Download gff for
BS06103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-RA | 7..777 | 10..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:41 Download gff for
BS06103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-RA | 7..777 | 10..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:41 Download gff for
BS06103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1051531..1052301 | 10..778 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:14:55 Download gff for
BS06103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 945564..946334 | 10..778 | 99 | | Plus |
BS06103.complete Sequence
992 bp (992 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635352
> BS06103.complete
GAAGTTATCAGTCGACATGTCGAGCTGGTCGCTTTGTCCGCTTTTACTGG
CCTTCGCGGTTCACGCCGTGCTTGGATCTGTGGATTTGGCTGGTTCCCTG
GATCCGTCGCTGCTGGAGAACGTGGATGTGGACCAGCTAAGGTCAAACTA
TCTGCCCCAAGGCCTGCAAAACACCAATGTGACCTTGGCCGACTTCCAAA
AGTGGCTGCAGTCGAAGTGCGAGAAGGCCAATGACCATTTGCCGAAAGGA
TCTGTTAACGCCTCTGCCCTGAGCAAGTCCATCGAGGATGCGGGCATTCA
CCTCGCAGAATGCCTCTCCGGATTGGCCAATATGACGGAGATCCAGGCGG
AGATCGAGGAGGCGAGTCCCAAGGGCGACCTGGACGTGGTCTTCGAGAAG
TATTGCCTCCGATTGCCGCAGGCCAAGACCTGTCTGAAGAACTTCAACGA
CGCGATCCTGCCCTGCCTGACCACCGATGAGAAGACCCACAACGCGGTGC
TGCAGAGGATTGCGGACAAGCTGCTGGAGTTCATATGCTACAAGAACGGA
GACCAGATTGCGCTCTTTATCGCCGAAGAGGGCCCGGAGTGCCTGCAGCA
GAGTCGCGAAGGCATCGCCAATTGCCTGAACTCTTCCTTCGCCGGATATC
TGCCCAAGTCGATTAGCCCGGAGTGGGATCTGCCCCAGCTGGTCTTGGGT
CCGAAGCAGTGCGTCGACCTCTACGCATTCGAGACGTGCACCGTCAGTCT
GCTGGAGAAGTGCGATACGATCACTCCCAGCAATATCGTGGAGTCCATGT
TTCGATACGTGAGGAAGGAGTCCTCCTGCCAGCCCCACATCGACAGGGTC
AAGCTGCAGCACCGCAGAGCCCTGCCCTTGACCAGTGGATCCCAGTCCGG
CTCATCCGTATCCCTTCATCTCACCTGGACCTCTGCGAGCCTGCTAATGG
CCACTTTCCTCGCCCGACTGGCCTAAAAGCTTTCTAGACCAT
BS06103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14629-RA | 960 | CG14629-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14629-RA | 1107 | CG14629-RA | 16..975 | 17..976 | 4800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1051540..1052499 | 17..976 | 4800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:50:55 has no hits.
BS06103.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:15 Download gff for
BS06103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-RA | 1..960 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:09 Download gff for
BS06103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-RA | 1..967 | 15..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:02 Download gff for
BS06103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-RA | 16..973 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:16 Download gff for
BS06103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-RA | 1..967 | 15..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:23 Download gff for
BS06103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14629-RA | 16..973 | 17..974 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:23 Download gff for
BS06103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1051540..1052497 | 17..974 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:02 Download gff for
BS06103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 945573..946530 | 17..974 | 100 | | Plus |
BS06103.pep Sequence
Translation from 16 to 975
> BS06103.pep
MSSWSLCPLLLAFAVHAVLGSVDLAGSLDPSLLENVDVDQLRSNYLPQGL
QNTNVTLADFQKWLQSKCEKANDHLPKGSVNASALSKSIEDAGIHLAECL
SGLANMTEIQAEIEEASPKGDLDVVFEKYCLRLPQAKTCLKNFNDAILPC
LTTDEKTHNAVLQRIADKLLEFICYKNGDQIALFIAEEGPECLQQSREGI
ANCLNSSFAGYLPKSISPEWDLPQLVLGPKQCVDLYAFETCTVSLLEKCD
TITPSNIVESMFRYVRKESSCQPHIDRVKLQHRRALPLTSGSQSGSSVSL
HLTWTSASLLMATFLARLA*
BS06103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14629-PA | 319 | CG14629-PA | 1..319 | 1..319 | 1652 | 100 | Plus |
CG11378-PC | 312 | CG11378-PC | 13..308 | 17..315 | 571 | 40.2 | Plus |
CG11378-PB | 312 | CG11378-PB | 13..308 | 17..315 | 571 | 40.2 | Plus |
CG11378-PA | 312 | CG11378-PA | 13..308 | 17..315 | 571 | 40.2 | Plus |
CG9917-PB | 301 | CG9917-PB | 23..290 | 32..311 | 518 | 37.7 | Plus |