Clone BS06105 Report

Search the DGRC for BS06105

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG4951-RA
Protein status:BS06105.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06105.3prime Sequence

932 bp (799 high quality bases) assembled on 2005-12-03

> BS06105.3prime
ATGGTCTAGAAAGCTTTTACAAAATCTTAACCTCGCGCGGCTTGGGCGTG
TCCAGCATGCTGTCCAGCCGCTGCAATGCATTGAACCGCCCTCCGTCCAT
GTGTTCCACCTTGAAATCTTTGGCCGGCACTGGCGATACTCGTTTCACTT
TGGGCTTGGGTCCTCTGCTCTTGCCGCTCCTGGTCTCGCCAACTACGAAG
TTTTTGAATCGACTCGGGCGTATGGGCGATCGGCCGGAGCGGCGTGCAGG
CTTGGCCTCAACGGAGCTGGATCTGGAATTCTGCTGTGATGGACTGTGCG
ATCGCTTAATGCGGTTGCTCTGCTGCGAGGAACTGGGGCTGCTGGAAGAA
GCCTTATCCTTTTCGCCTCCTTGGGAAATGGACCTGCGCTCGCTCTTGAT
CTTGGTTGGTTGGCTGGCCGTGGTGGAGCTCTTGTCATCCTCGTTGTCGG
CGTCAATGTGCTTGGGCTTCGATTGTGTGCCCGCTTTTGGCTTGGATCCT
GAGTTTGCTACGCGGATCTTGCGGGATGTGGGTCTGGTGCCATTTGTTTC
TGCTTCCGTGGCAAGCTCGCGCTTGGCGGGAATGACGTCCACAATGGTGG
TGTCCTCTTGTGTTATGTACTGCAGCTGTAGGTCCAGGCAGAGATCCTTG
GAGCTGGACTCCGTACCGGCCAGAAGAGCGACCGTTGCAGGATGCGACTT
ATTGGTCGCCTGGACGCGCACGATGATGTGATCGATAATGAGCTCGGTGT
CCAGTTGGTAGGCATCCTGCCACTGCTTCAGGTTCTCGAACAGGCGCCAT
AGACCACACTCAATCCGGCTCCACCGATCCGCGGTCATCCAATGAAATCA
TTCTTGGATTCCCGCTCAAAATGGGTCACAGGTGTCGGCAGAACTTTGAC
GCTGCAGATGACGCGGTGCTTCTTGTACTGGT

BS06105.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4951-PA 963 CG4951-RA 136..963 844..17 4140 100 Minus
CG4951-PA 963 CG4951-RA 47..135 932..844 445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4951-RA 1074 CG4951-RA 107..1023 932..17 4560 99.9 Minus
CG4951-RB 1591 CG4951-RB 107..1019 932..21 4540 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27953498..27953949 480..930 2210 99.8 Plus
3R 32079331 3R 27953143..27953342 281..480 1000 100 Plus
3R 32079331 3R 27952753..27952925 17..189 865 100 Plus
3R 32079331 3R 27952993..27953085 189..281 465 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:55:17 has no hits.

BS06105.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:15 Download gff for BS06105.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4951-PA 47..963 17..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:57 Download gff for BS06105.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4951-PA 47..963 17..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:17:30 Download gff for BS06105.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4951-RA 107..1023 17..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:59 Download gff for BS06105.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4951-RA 107..1023 17..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:59 Download gff for BS06105.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27952753..27952924 17..188 100 <- Plus
3R 27952993..27953085 189..281 100 <- Plus
3R 27953144..27953341 282..479 100 <- Plus
3R 27953498..27953949 480..932 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:17:30 Download gff for BS06105.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23778475..23778646 17..188 100 <- Plus
arm_3R 23778715..23778807 189..281 100 <- Plus
arm_3R 23778866..23779063 282..479 100 <- Plus
arm_3R 23779220..23779671 480..932 99   Plus

BS06105.5prime Sequence

831 bp (784 high quality bases) assembled on 2005-12-03

> BS06105.5prime
GAAGTTATCAGTCGACATGTCATTTTCCGCCATCGGTGATTGCCAACTAA
TTTCGCAATTATACCAGTACAAGAAGCACCGCGTCATCTGCAGCGTCAAA
GTTCTGCCGACACCTGTGACCCATTTTGAGCGGGAATCCAAGAATGATTT
CCATTGGATGACCGCGGATCGGTGGAGCCGGATTGAGTGTGGTCTATGGC
GCCTGTTCGAGAACCTGAAGCAGTGGCAGGATGCCTACCAACTGGACACC
GAGCTCATTATCGATCACATCATCGTGCGCGTCCAGGCGACCAATAAGTC
GCATCCTGCAACGGTCGCTCTTCTGGCCGGTACGGAGTCCAGCTCCAAGG
ATCTCTGCCTGGACCTACAGCTGCAGTACATAACACAAGAGGACACCACC
ATTGTGGACGTCATTCCCGCCAAGCGCGAGCTTGCCACGGAAGCAGAAAC
AAATGGCACCAGACCCACATCCCGCAAGATCCGCGTAGCAAACTCAGGAT
CCAAGCCAAAAGCGGGCACACAATCGAAGCCCAAGCACATTGACGCCGAC
AACGAGGATGACAAGAGCTCCACCACGGCCAGCCAACCAACCAAGATCAA
GAGCGAGCGCAGGTCCATTTCCCAAGGAGGCGAAAAGGATAAGGCTTCTT
CCAGCAGCCCCAGTTCCTCGCAGCAGAGCAACCGCATTAAGCGATCGCAC
AGTCCATCACAGCAGAATTCCAGATCCAGCTCCGTTGAGGCCAAGCCTGC
ACGCCGCTCCGGCCGATCGCCCATACGCCCGAGTCGATTCAAAAACTTCG
TAGTTGGCGAGACCAGGAGCGGCAAGAGCAG

BS06105.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4951-PA 963 CG4951-RA 1..815 17..831 4075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4951-RB 1591 CG4951-RB 61..875 17..831 4075 100 Plus
CG4951-RA 1074 CG4951-RA 61..875 17..831 4075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27953498..27953949 516..65 2260 100 Minus
3R 32079331 3R 27953143..27953342 715..516 1000 100 Minus
3R 32079331 3R 27952993..27953085 807..715 465 100 Minus
3R 32079331 3R 27954002..27954052 67..17 255 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:04:51 has no hits.

BS06105.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:16 Download gff for BS06105.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4951-PA 1..815 17..831 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:58 Download gff for BS06105.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4951-PA 1..815 17..831 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:20 Download gff for BS06105.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4951-RA 61..875 17..831 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:53 Download gff for BS06105.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4951-RA 61..875 17..831 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:53 Download gff for BS06105.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27952901..27952924 808..831 100 <- Minus
3R 27952993..27953085 715..807 100 <- Minus
3R 27953144..27953341 517..714 100 <- Minus
3R 27953498..27953946 68..516 100 <- Minus
3R 27954002..27954052 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:20 Download gff for BS06105.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23778715..23778807 715..807 100 <- Minus
arm_3R 23778866..23779063 517..714 100 <- Minus
arm_3R 23778623..23778646 808..831 100 <- Minus
arm_3R 23779220..23779668 68..516 100 <- Minus
arm_3R 23779724..23779774 17..67 100   Minus

BS06105.complete Sequence

995 bp (995 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635353

> BS06105.complete
GAAGTTATCAGTCGACATGTCATTTTCCGCCATCGGTGATTGCCAACTAA
TTTCGCAATTATACCAGTACAAGAAGCACCGCGTCATCTGCAGCGTCAAA
GTTCTGCCGACACCTGTGACCCATTTTGAGCGGGAATCCAAGAATGATTT
CCATTGGATGACCGCGGATCGGTGGAGCCGGATTGAGTGTGGTCTATGGC
GCCTGTTCGAGAACCTGAAGCAGTGGCAGGATGCCTACCAACTGGACACC
GAGCTCATTATCGATCACATCATCGTGCGCGTCCAGGCGACCAATAAGTC
GCATCCTGCAACGGTCGCTCTTCTGGCCGGTACGGAGTCCAGCTCCAAGG
ATCTCTGCCTGGACCTACAGCTGCAGTACATAACACAAGAGGACACCACC
ATTGTGGACGTCATTCCCGCCAAGCGCGAGCTTGCCACGGAAGCAGAAAC
AAATGGCACCAGACCCACATCCCGCAAGATCCGCGTAGCAAACTCAGGAT
CCAAGCCAAAAGCGGGCACACAATCGAAGCCCAAGCACATTGACGCCGAC
AACGAGGATGACAAGAGCTCCACCACGGCCAGCCAACCAACCAAGATCAA
GAGCGAGCGCAGGTCCATTTCCCAAGGAGGCGAAAAGGATAAGGCTTCTT
CCAGCAGCCCCAGTTCCTCGCAGCAGAGCAACCGCATTAAGCGATCGCAC
AGTCCATCACAGCAGAATTCCAGATCCAGCTCCGTTGAGGCCAAGCCTGC
ACGCCGCTCCGGCCGATCGCCCATACGCCCGAGTCGATTCAAAAACTTCG
TAGTTGGCGAGACCAGGAGCGGCAAGAGCAGAGGACCCAAGCCCAAAGTG
AAACGAGTATCGCCAGTGCCGGCCAAAGATTTCAAGGTGGAACACATGGA
CGGAGGGCGGTTCAATGCATTGCAGCGGCTGGACAGCATGCTGGACACGC
CCAAGCCGCGCGAGGTTAAGATTTTGTAAAAGCTTTCTAGACCAT

BS06105.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4951-RA 963 CG4951-PA 1..963 17..979 4815 100 Plus
CG4951-RB 1341 CG4951-PB 1..959 17..975 4795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4951-RA 1074 CG4951-RA 61..1023 17..979 4815 100 Plus
CG4951-RB 1591 CG4951-RB 61..1019 17..975 4795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27953498..27953949 516..65 2260 100 Minus
3R 32079331 3R 27953143..27953342 715..516 1000 100 Minus
3R 32079331 3R 27952753..27952925 979..807 865 100 Minus
3R 32079331 3R 27952993..27953085 807..715 465 100 Minus
3R 32079331 3R 27954002..27954052 67..17 255 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:19:42 has no hits.

BS06105.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:17 Download gff for BS06105.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RA 1..963 17..979 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:11 Download gff for BS06105.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RA 61..1023 17..979 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:36 Download gff for BS06105.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RA 61..1021 17..977 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:18 Download gff for BS06105.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RA 61..1023 17..979 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:54 Download gff for BS06105.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RA 61..1021 17..977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:54 Download gff for BS06105.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27954002..27954052 17..67 100   Minus
3R 27952755..27952924 808..977 100 <- Minus
3R 27952993..27953085 715..807 100 <- Minus
3R 27953144..27953341 517..714 100 <- Minus
3R 27953498..27953946 68..516 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:36 Download gff for BS06105.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23778715..23778807 715..807 100 <- Minus
arm_3R 23778866..23779063 517..714 100 <- Minus
arm_3R 23778477..23778646 808..977 100 <- Minus
arm_3R 23779220..23779668 68..516 100 <- Minus
arm_3R 23779724..23779774 17..67 100   Minus

BS06105.pep Sequence

Translation from 16 to 978

> BS06105.pep
MSFSAIGDCQLISQLYQYKKHRVICSVKVLPTPVTHFERESKNDFHWMTA
DRWSRIECGLWRLFENLKQWQDAYQLDTELIIDHIIVRVQATNKSHPATV
ALLAGTESSSKDLCLDLQLQYITQEDTTIVDVIPAKRELATEAETNGTRP
TSRKIRVANSGSKPKAGTQSKPKHIDADNEDDKSSTTASQPTKIKSERRS
ISQGGEKDKASSSSPSSSQQSNRIKRSHSPSQQNSRSSSVEAKPARRSGR
SPIRPSRFKNFVVGETRSGKSRGPKPKVKRVSPVPAKDFKVEHMDGGRFN
ALQRLDSMLDTPKPREVKIL*

BS06105.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4951-PA 320 CG4951-PA 1..320 1..320 1645 100 Plus
CG4951-PB 446 CG4951-PB 1..320 1..320 1645 100 Plus