Clone Sequence Records
BS06105.3prime Sequence
932 bp (799 high quality bases) assembled on 2005-12-03
> BS06105.3prime
ATGGTCTAGAAAGCTTTTACAAAATCTTAACCTCGCGCGGCTTGGGCGTG
TCCAGCATGCTGTCCAGCCGCTGCAATGCATTGAACCGCCCTCCGTCCAT
GTGTTCCACCTTGAAATCTTTGGCCGGCACTGGCGATACTCGTTTCACTT
TGGGCTTGGGTCCTCTGCTCTTGCCGCTCCTGGTCTCGCCAACTACGAAG
TTTTTGAATCGACTCGGGCGTATGGGCGATCGGCCGGAGCGGCGTGCAGG
CTTGGCCTCAACGGAGCTGGATCTGGAATTCTGCTGTGATGGACTGTGCG
ATCGCTTAATGCGGTTGCTCTGCTGCGAGGAACTGGGGCTGCTGGAAGAA
GCCTTATCCTTTTCGCCTCCTTGGGAAATGGACCTGCGCTCGCTCTTGAT
CTTGGTTGGTTGGCTGGCCGTGGTGGAGCTCTTGTCATCCTCGTTGTCGG
CGTCAATGTGCTTGGGCTTCGATTGTGTGCCCGCTTTTGGCTTGGATCCT
GAGTTTGCTACGCGGATCTTGCGGGATGTGGGTCTGGTGCCATTTGTTTC
TGCTTCCGTGGCAAGCTCGCGCTTGGCGGGAATGACGTCCACAATGGTGG
TGTCCTCTTGTGTTATGTACTGCAGCTGTAGGTCCAGGCAGAGATCCTTG
GAGCTGGACTCCGTACCGGCCAGAAGAGCGACCGTTGCAGGATGCGACTT
ATTGGTCGCCTGGACGCGCACGATGATGTGATCGATAATGAGCTCGGTGT
CCAGTTGGTAGGCATCCTGCCACTGCTTCAGGTTCTCGAACAGGCGCCAT
AGACCACACTCAATCCGGCTCCACCGATCCGCGGTCATCCAATGAAATCA
TTCTTGGATTCCCGCTCAAAATGGGTCACAGGTGTCGGCAGAACTTTGAC
GCTGCAGATGACGCGGTGCTTCTTGTACTGGT
BS06105.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-PA | 963 | CG4951-RA | 136..963 | 844..17 | 4140 | 100 | Minus |
CG4951-PA | 963 | CG4951-RA | 47..135 | 932..844 | 445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-RA | 1074 | CG4951-RA | 107..1023 | 932..17 | 4560 | 99.9 | Minus |
CG4951-RB | 1591 | CG4951-RB | 107..1019 | 932..21 | 4540 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27953498..27953949 | 480..930 | 2210 | 99.8 | Plus |
3R | 32079331 | 3R | 27953143..27953342 | 281..480 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 27952753..27952925 | 17..189 | 865 | 100 | Plus |
3R | 32079331 | 3R | 27952993..27953085 | 189..281 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:55:17 has no hits.
BS06105.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:15 Download gff for
BS06105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-PA | 47..963 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:57 Download gff for
BS06105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-PA | 47..963 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:17:30 Download gff for
BS06105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 107..1023 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:59 Download gff for
BS06105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 107..1023 | 17..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:59 Download gff for
BS06105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27952753..27952924 | 17..188 | 100 | <- | Plus |
3R | 27952993..27953085 | 189..281 | 100 | <- | Plus |
3R | 27953144..27953341 | 282..479 | 100 | <- | Plus |
3R | 27953498..27953949 | 480..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:17:30 Download gff for
BS06105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23778475..23778646 | 17..188 | 100 | <- | Plus |
arm_3R | 23778715..23778807 | 189..281 | 100 | <- | Plus |
arm_3R | 23778866..23779063 | 282..479 | 100 | <- | Plus |
arm_3R | 23779220..23779671 | 480..932 | 99 | | Plus |
BS06105.5prime Sequence
831 bp (784 high quality bases) assembled on 2005-12-03
> BS06105.5prime
GAAGTTATCAGTCGACATGTCATTTTCCGCCATCGGTGATTGCCAACTAA
TTTCGCAATTATACCAGTACAAGAAGCACCGCGTCATCTGCAGCGTCAAA
GTTCTGCCGACACCTGTGACCCATTTTGAGCGGGAATCCAAGAATGATTT
CCATTGGATGACCGCGGATCGGTGGAGCCGGATTGAGTGTGGTCTATGGC
GCCTGTTCGAGAACCTGAAGCAGTGGCAGGATGCCTACCAACTGGACACC
GAGCTCATTATCGATCACATCATCGTGCGCGTCCAGGCGACCAATAAGTC
GCATCCTGCAACGGTCGCTCTTCTGGCCGGTACGGAGTCCAGCTCCAAGG
ATCTCTGCCTGGACCTACAGCTGCAGTACATAACACAAGAGGACACCACC
ATTGTGGACGTCATTCCCGCCAAGCGCGAGCTTGCCACGGAAGCAGAAAC
AAATGGCACCAGACCCACATCCCGCAAGATCCGCGTAGCAAACTCAGGAT
CCAAGCCAAAAGCGGGCACACAATCGAAGCCCAAGCACATTGACGCCGAC
AACGAGGATGACAAGAGCTCCACCACGGCCAGCCAACCAACCAAGATCAA
GAGCGAGCGCAGGTCCATTTCCCAAGGAGGCGAAAAGGATAAGGCTTCTT
CCAGCAGCCCCAGTTCCTCGCAGCAGAGCAACCGCATTAAGCGATCGCAC
AGTCCATCACAGCAGAATTCCAGATCCAGCTCCGTTGAGGCCAAGCCTGC
ACGCCGCTCCGGCCGATCGCCCATACGCCCGAGTCGATTCAAAAACTTCG
TAGTTGGCGAGACCAGGAGCGGCAAGAGCAG
BS06105.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-PA | 963 | CG4951-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-RB | 1591 | CG4951-RB | 61..875 | 17..831 | 4075 | 100 | Plus |
CG4951-RA | 1074 | CG4951-RA | 61..875 | 17..831 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27953498..27953949 | 516..65 | 2260 | 100 | Minus |
3R | 32079331 | 3R | 27953143..27953342 | 715..516 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 27952993..27953085 | 807..715 | 465 | 100 | Minus |
3R | 32079331 | 3R | 27954002..27954052 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:04:51 has no hits.
BS06105.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:16 Download gff for
BS06105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-PA | 1..815 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:06:58 Download gff for
BS06105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-PA | 1..815 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:20 Download gff for
BS06105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..875 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:53 Download gff for
BS06105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..875 | 17..831 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:53 Download gff for
BS06105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27952901..27952924 | 808..831 | 100 | <- | Minus |
3R | 27952993..27953085 | 715..807 | 100 | <- | Minus |
3R | 27953144..27953341 | 517..714 | 100 | <- | Minus |
3R | 27953498..27953946 | 68..516 | 100 | <- | Minus |
3R | 27954002..27954052 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:20 Download gff for
BS06105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23778715..23778807 | 715..807 | 100 | <- | Minus |
arm_3R | 23778866..23779063 | 517..714 | 100 | <- | Minus |
arm_3R | 23778623..23778646 | 808..831 | 100 | <- | Minus |
arm_3R | 23779220..23779668 | 68..516 | 100 | <- | Minus |
arm_3R | 23779724..23779774 | 17..67 | 100 | | Minus |
BS06105.complete Sequence
995 bp (995 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635353
> BS06105.complete
GAAGTTATCAGTCGACATGTCATTTTCCGCCATCGGTGATTGCCAACTAA
TTTCGCAATTATACCAGTACAAGAAGCACCGCGTCATCTGCAGCGTCAAA
GTTCTGCCGACACCTGTGACCCATTTTGAGCGGGAATCCAAGAATGATTT
CCATTGGATGACCGCGGATCGGTGGAGCCGGATTGAGTGTGGTCTATGGC
GCCTGTTCGAGAACCTGAAGCAGTGGCAGGATGCCTACCAACTGGACACC
GAGCTCATTATCGATCACATCATCGTGCGCGTCCAGGCGACCAATAAGTC
GCATCCTGCAACGGTCGCTCTTCTGGCCGGTACGGAGTCCAGCTCCAAGG
ATCTCTGCCTGGACCTACAGCTGCAGTACATAACACAAGAGGACACCACC
ATTGTGGACGTCATTCCCGCCAAGCGCGAGCTTGCCACGGAAGCAGAAAC
AAATGGCACCAGACCCACATCCCGCAAGATCCGCGTAGCAAACTCAGGAT
CCAAGCCAAAAGCGGGCACACAATCGAAGCCCAAGCACATTGACGCCGAC
AACGAGGATGACAAGAGCTCCACCACGGCCAGCCAACCAACCAAGATCAA
GAGCGAGCGCAGGTCCATTTCCCAAGGAGGCGAAAAGGATAAGGCTTCTT
CCAGCAGCCCCAGTTCCTCGCAGCAGAGCAACCGCATTAAGCGATCGCAC
AGTCCATCACAGCAGAATTCCAGATCCAGCTCCGTTGAGGCCAAGCCTGC
ACGCCGCTCCGGCCGATCGCCCATACGCCCGAGTCGATTCAAAAACTTCG
TAGTTGGCGAGACCAGGAGCGGCAAGAGCAGAGGACCCAAGCCCAAAGTG
AAACGAGTATCGCCAGTGCCGGCCAAAGATTTCAAGGTGGAACACATGGA
CGGAGGGCGGTTCAATGCATTGCAGCGGCTGGACAGCATGCTGGACACGC
CCAAGCCGCGCGAGGTTAAGATTTTGTAAAAGCTTTCTAGACCAT
BS06105.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-RA | 963 | CG4951-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
CG4951-RB | 1341 | CG4951-PB | 1..959 | 17..975 | 4795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-RA | 1074 | CG4951-RA | 61..1023 | 17..979 | 4815 | 100 | Plus |
CG4951-RB | 1591 | CG4951-RB | 61..1019 | 17..975 | 4795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27953498..27953949 | 516..65 | 2260 | 100 | Minus |
3R | 32079331 | 3R | 27953143..27953342 | 715..516 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 27952753..27952925 | 979..807 | 865 | 100 | Minus |
3R | 32079331 | 3R | 27952993..27953085 | 807..715 | 465 | 100 | Minus |
3R | 32079331 | 3R | 27954002..27954052 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:19:42 has no hits.
BS06105.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:17 Download gff for
BS06105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 1..963 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:11 Download gff for
BS06105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..1023 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:36 Download gff for
BS06105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..1021 | 17..977 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:18 Download gff for
BS06105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..1023 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:54 Download gff for
BS06105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..1021 | 17..977 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:54 Download gff for
BS06105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27954002..27954052 | 17..67 | 100 | | Minus |
3R | 27952755..27952924 | 808..977 | 100 | <- | Minus |
3R | 27952993..27953085 | 715..807 | 100 | <- | Minus |
3R | 27953144..27953341 | 517..714 | 100 | <- | Minus |
3R | 27953498..27953946 | 68..516 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:36 Download gff for
BS06105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23778715..23778807 | 715..807 | 100 | <- | Minus |
arm_3R | 23778866..23779063 | 517..714 | 100 | <- | Minus |
arm_3R | 23778477..23778646 | 808..977 | 100 | <- | Minus |
arm_3R | 23779220..23779668 | 68..516 | 100 | <- | Minus |
arm_3R | 23779724..23779774 | 17..67 | 100 | | Minus |
BS06105.pep Sequence
Translation from 16 to 978
> BS06105.pep
MSFSAIGDCQLISQLYQYKKHRVICSVKVLPTPVTHFERESKNDFHWMTA
DRWSRIECGLWRLFENLKQWQDAYQLDTELIIDHIIVRVQATNKSHPATV
ALLAGTESSSKDLCLDLQLQYITQEDTTIVDVIPAKRELATEAETNGTRP
TSRKIRVANSGSKPKAGTQSKPKHIDADNEDDKSSTTASQPTKIKSERRS
ISQGGEKDKASSSSPSSSQQSNRIKRSHSPSQQNSRSSSVEAKPARRSGR
SPIRPSRFKNFVVGETRSGKSRGPKPKVKRVSPVPAKDFKVEHMDGGRFN
ALQRLDSMLDTPKPREVKIL*
BS06105.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-PA | 320 | CG4951-PA | 1..320 | 1..320 | 1645 | 100 | Plus |
CG4951-PB | 446 | CG4951-PB | 1..320 | 1..320 | 1645 | 100 | Plus |