Clone Sequence Records
BS06106.3prime Sequence
960 bp (794 high quality bases) assembled on 2005-12-03
> BS06106.3prime
ATGGTCTAGAAAGCTTTCAGGAGCTGGCTTCGCCGCCGCCGGCAGAAATG
GGCGTCAGGTTAATCAGGTTGTTGCTGCTCTCGGCCAGCTCGGCGATGGA
GACGCGTCCGCGTTGTTTTATGAACTTGGCCACGGCCAATAGCTCCTTCT
CGGAAACATAGATGAACTTGCCGCGGTCGTCTATGACGCCGGTGAGGGTG
CCATCGGCCTGCAGGTTCTGGATGCGATCAATGACCTGCTGCGTCTTTAA
TTTGAAGGCCACGGCCAGATCCTCTAGGACCACCACCTTGTTGTCCCTAA
TGTACTGAATGAAGTCGGCCAGGAGGTTGTCCTGGTCGTCGGCGTCGCCC
TCTTCGAAGCCCTCTTCCTCCACACTGAAGGCAGCCTTCATCTTCAGGTA
CTCCTCGTGCTCCTTGCGCTCCCGTTCCTCTTTGGCCAGGCGCTCGGCAT
CCACCCGCTTGCGCTCGGCCTCTGCCTCAAGGTCTTCTTGCTGCTTGCGC
TCCGCCTCCTCCTTCGCCTCCTTCACCTTGCGCTGTTCGCGATCGTGCAG
TTCCTGCTCCCGCTGAAGCCGCTTCTGCTCCTTGGCCTCCATCTTGGCAC
GCTTCTTAGCACCCATTTTCTCATCCAGCACCGCTCCCTGGGGCACACGT
GCCTCATCACCATCGACCTGACCCTCGTCCTCGTGGTCAGAGTCGCCGGC
AGCCGGAAGAGCACCAGCTGCCGCGGCGACTGGAGCCGCTGGAACATTCT
GGCGCAGTCGATTGCGCTGATTTCGAGCTATTTGAGCCCGACGCGGAACA
CCCTCCTGGGCGCGCTGTGGAACGCCACGTTGAGGAGCTGCAGCTACCTT
GGTTTCTGGGGCGGCGTTTTTCTTTTGCAGCAGGTACAGTGTGACGATCA
CAACTAAAAGAGCTACGGCAATCCCCACGAGAATGATCAGATCCATGTCG
ACTGATAACT
BS06106.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-PA | 930 | CG5862-RA | 1..930 | 946..17 | 4650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-RA | 1090 | CG5862-RA | 82..1011 | 946..17 | 4650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21215306..21216147 | 858..17 | 4210 | 100 | Minus |
| 3R | 32079331 | 3R | 21215160..21215250 | 946..856 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:14:21 has no hits.
BS06106.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:17 Download gff for
BS06106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-PA | 1..930 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:00 Download gff for
BS06106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-PA | 1..930 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:51:18 Download gff for
BS06106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 77..1019 | 10..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:12 Download gff for
BS06106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 77..1019 | 10..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:12 Download gff for
BS06106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21215155..21215250 | 856..951 | 97 | -> | Minus |
| 3R | 21215309..21216155 | 10..855 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:51:18 Download gff for
BS06106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17040877..17040972 | 856..951 | 97 | -> | Minus |
| arm_3R | 17041031..17041877 | 10..855 | 99 | | Minus |
BS06106.5prime Sequence
921 bp (752 high quality bases) assembled on 2005-12-03
> BS06106.5prime
GAAGTTATCAGTCGACATGGATCTGATCATTCTCGTGGGGATTGCCGTAG
CTCTTTTAGTTGTGATCGTCACACTGTACCTGCTGCAAAAGAAAAACGCC
GCCCCAGAAACCAAGGTAGCTGCAGCTCCTCAACGTGGCGTTCCACAGCG
CGCCCAGGAGGGTGTTCCGCGTCGGGCTCAAATAGCTCGAAATCAGCGCA
ATCGACTGCGCCAGAATGTTCCAGCGGCTCCAGTCGCCGCGGCAGCTGGT
GCTCTTCCGGCTGCCGGCGACTCTGACCACGAGGACGAGGGTCAGGTCGA
TGGTGATGAGGCACGTGTGCCCCAGGGAGCGGTGCTGGATGAGAAAATGG
GTGCTAAGAAGCGTGCCAAGATGGAGGCCAAGGAGCAGAAGCGGCTTCAG
CGGGAGCAGGAACTGCACGATCGCGAACAGCGCAAGGTGAAGGAGGCGAA
GGAGGAGGCGGAGCGCAAGCAGCAAGAAGACCTTGAGGCAGAGGCCGAGC
GCAAGCGGGTGGATGCCGAGCGCCTGGCCAAAGAGGAACGGGAGCGCAAG
GAGCACGAGGAGTACCTGAAGATGAAGGCTGCCTTCAGTGTGGAGGAAGA
GGGCTTCGAAGAGGGCGACGCCGACGACCAGGACAACCTCCTGGCCGACT
TCATTCAGTACATTAGGGACAACAAGGTGGTGGTCCTAGAGGATCTGGCC
GTGGCCTTCAAATTAAAGACGCAGCAGGTCATTGATCGCATCCAGAACCT
GCAGGCCGATGGCACCCTCACCGGCGTCATAGACGACCGCGGGCAGTTCA
TCTATGTTTCCGAGAAAGAGCTATTGGCCGTGGCCAAGTTCATAAAACAA
CGCGGACGCGTCTCCATCGCCGAGCTGGCCGAGAGCAGCAACAACCTGAT
TAACCTGACGCCCATTTCTGC
BS06106.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-PA | 930 | CG5862-RA | 1..905 | 17..921 | 4450 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-RA | 1090 | CG5862-RA | 82..986 | 17..921 | 4480 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21215306..21216122 | 105..921 | 4040 | 99.6 | Plus |
| 3R | 32079331 | 3R | 21215160..21215250 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:08:40 has no hits.
BS06106.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:18 Download gff for
BS06106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:01 Download gff for
BS06106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:34:55 Download gff for
BS06106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 77..986 | 12..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:04 Download gff for
BS06106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 77..986 | 12..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:04 Download gff for
BS06106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21215155..21215250 | 12..107 | 97 | -> | Plus |
| 3R | 21215309..21216122 | 108..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:34:55 Download gff for
BS06106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17040877..17040972 | 12..107 | 97 | -> | Plus |
| arm_3R | 17041031..17041844 | 108..921 | 99 | | Plus |
BS06106.complete Sequence
962 bp (962 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635354
> BS06106.complete
GAAGTTATCAGTCGACATGGATCTGATCATTCTCGTGGGGATTGCCGTAG
CTCTTTTAGTTGTGATCGTCACACTGTACCTGCTGCAAAAGAAAAACGCC
GCCCCAGAAACCAAGGTAGCTGCAGCTCCTCAACGTGGCGTTCCACAGCG
CGCCCAGGAGGGTGTTCCGCGTCGGGCTCAAATAGCTCGAAATCAGCGCA
ATCGACTGCGCCAGAATGTTCCAGCGGCTCCAGTCGCCGCGGCAGCTGGT
GCTCTTCCGGCTGCCGGCGACTCTGACCACGAGGACGAGGGTCAGGTCGA
TGGTGATGAGGCACGTGTGCCCCAGGGAGCGGTGCTGGATGAGAAAATGG
GTGCTAAGAAGCGTGCCAAGATGGAGGCCAAGGAGCAGAAGCGGCTTCAG
CGGGAGCAGGAACTGCACGATCGCGAACAGCGCAAGGTGAAGGAGGCGAA
GGAGGAGGCGGAGCGCAAGCAGCAAGAAGACCTTGAGGCAGAGGCCGAGC
GCAAGCGGGTGGATGCCGAGCGCCTGGCCAAAGAGGAACGGGAGCGCAAG
GAGCACGAGGAGTACCTGAAGATGAAGGCTGCCTTCAGTGTGGAGGAAGA
GGGCTTCGAAGAGGGCGACGCCGACGACCAGGACAACCTCCTGGCCGACT
TCATTCAGTACATTAGGGACAACAAGGTGGTGGTCCTAGAGGATCTGGCC
GTGGCCTTCAAATTAAAGACGCAGCAGGTCATTGATCGCATCCAGAACCT
GCAGGCCGATGGCACCCTCACCGGCGTCATAGACGACCGCGGCAAGTTCA
TCTATGTTTCCGAGAAGGAGCTATTGGCCGTGGCCAAGTTCATAAAACAA
CGCGGACGCGTCTCCATCGCCGAGCTGGCCGAGAGCAGCAACAACCTGAT
TAACCTGACGCCCATTTCTGCCGGCGGCGGCGAAGCCAGCTCCTGAAAGC
TTTCTAGACCAT
BS06106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-RA | 930 | CG5862-PA | 1..930 | 17..946 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-RA | 1090 | CG5862-RA | 82..1011 | 17..946 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21215306..21216147 | 105..946 | 4210 | 100 | Plus |
| 3R | 32079331 | 3R | 21215160..21215250 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:38:03 has no hits.
BS06106.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:19 Download gff for
BS06106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:13 Download gff for
BS06106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 84..1026 | 12..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:11 Download gff for
BS06106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 82..1010 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:19 Download gff for
BS06106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 84..1026 | 12..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:41 Download gff for
BS06106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 82..1010 | 17..945 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:41 Download gff for
BS06106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21215160..21215250 | 17..107 | 100 | -> | Plus |
| 3R | 21215309..21216146 | 108..945 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:11 Download gff for
BS06106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17040882..17040972 | 17..107 | 100 | -> | Plus |
| arm_3R | 17041031..17041868 | 108..945 | 100 | | Plus |
BS06106.pep Sequence
Translation from 16 to 945
> BS06106.pep
MDLIILVGIAVALLVVIVTLYLLQKKNAAPETKVAAAPQRGVPQRAQEGV
PRRAQIARNQRNRLRQNVPAAPVAAAAGALPAAGDSDHEDEGQVDGDEAR
VPQGAVLDEKMGAKKRAKMEAKEQKRLQREQELHDREQRKVKEAKEEAER
KQQEDLEAEAERKRVDAERLAKEERERKEHEEYLKMKAAFSVEEEGFEEG
DADDQDNLLADFIQYIRDNKVVVLEDLAVAFKLKTQQVIDRIQNLQADGT
LTGVIDDRGKFIYVSEKELLAVAKFIKQRGRVSIAELAESSNNLINLTPI
SAGGGEASS*
BS06106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-PA | 309 | CG5862-PA | 1..309 | 1..309 | 1516 | 100 | Plus |
