Clone Sequence Records
BS06108.3prime Sequence
879 bp (821 high quality bases) assembled on 2005-12-03
> BS06108.3prime
ATGGTCTAGAAAGCTTTTAGAGCGCACTGGTTGGCTGGTACACATAGAAC
TCTTCATCCGCAGACTTGCTGACCCGCAGCTTTCCCTCCTTCTCCAGCTT
GCTTAGGTGGTGGTTCACGTTATAGGCGGCGGCGGGCCAGAGGTTTTCTG
GTGTCTCCTTGTAGACCACCTTCACGACGTCCATAGCCTGCAAGTTTTCG
TTGGGCCGCTGAACGAAGAACTGCAGGATTTGCTGTTCTCGCTGGTTGCG
ATGGTTAATGTAGTACTCAATCTTGCCAATTGGTTCCTCAATGACATTGC
CATGGCCTGGAAAGATACGCTGCGGCTTGATGTCTAGTATCTTCTCCAGG
CTTTTCATGTACTCAAATAGGTCCTCGAAGACGGCGGTGCCCTCGCCAAG
GATGCAATCGCCGCTGAAGAGTGTGCCCTCGTTCATGGCCAGCACCACAT
GATCAGTGGTGTGACCGGGTGTGTGAACCACCCGCACATTCGCCCCCTCC
GTGGTGAACTCTTGGTTGTGTGCTAGCGGATGGAGTTTGATATCCGTCGG
TATCTCGGGGCACACATCTGGAGCATCTGTACGCCCAAACTTGAATACGC
GGCAATCCTTTTCGGCCAATTTAGTACCCACAATGCTCTTTACACCGCCG
ACATGGTCGTGGTGCCAGTGGGTCAGCAGGATGGTGTCGATGGAGGCCTT
TTCCTGCTGTAGCACATCTCCCAGGTGAGCGATGTACTGCGGCACGTCTT
CGTCACCAGTGTCGATCAAGATTCTCCTACTGCCACTGCCGAGGAGGTAC
GTATTGGTGCCCTGGAGCGTCATGGCACTGGGATTACACCCAGTATCCGA
ATACGGAGGAGGTGAGTCTGGTACAGCCG
BS06108.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-PA | 879 | CG12375-RA | 58..879 | 838..17 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-RA | 1165 | CG12375-RA | 165..1031 | 879..16 | 4260 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8125802..8126661 | 16..873 | 4200 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:56:57 has no hits.
BS06108.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:19 Download gff for
BS06108.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-PA | 14..879 | 17..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:03 Download gff for
BS06108.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-PA | 14..879 | 17..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:17:47 Download gff for
BS06108.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 165..1036 | 11..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:05 Download gff for
BS06108.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 165..1036 | 11..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:05 Download gff for
BS06108.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8125797..8126668 | 11..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:17:47 Download gff for
BS06108.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8125797..8126668 | 11..879 | 99 | | Plus |
BS06108.5prime Sequence
858 bp (678 high quality bases) assembled on 2005-12-03
> BS06108.5prime
GAAGTTATCAGTCGACATGGCGCTGATTCCGGCTGTTACCAGACTCACCT
CCTCCGTAATTCGGATACTGGGTTGTAATCCCAGTGCCATGACGCTCCAG
GGCACCAATACGTACCTCCTCGGCAGTGGCAGTAGGAGAATCTTGATCGA
CACTGGTGACGAAGACGTGCCGCAGTACATCGCTCACCTGGGAGATGTGC
TACAGCAGGAAAAGGCCTCCATCGACACCATCCTGCTGACCCACTGGCAC
CACGACCATGTCGGCGGTGTAAAGAGCATTGTGGGTACTAAATTGGCCGA
AAAGGATTGCCGCGTATTCAAGTTTGGGCGTACAGATGCTCCAGATGTGT
GCCCCGAGATACCGACGGATATCAAACTCCATCCGCTAGCACACAACCAA
GAGTTCACCACGGAGGGGGCGAATGTGCGGGTGGTTCACACACCCGGTCA
CACCACTGATCATGTGGTGCTGGCCATGAACGAGGGCACACTCTTCAGCG
GCGATTGCATCCTTGGCGAGGGCACCGCCGTCTTCGAGGACCTATTTGAG
TACATGAAAAGCCTGGAGAAGATACTAGACATCAAGCCGCAGCGTATCTT
TCCAGGCCATGGCAATGTCATTGAGGAACCAATTGGCAAGATTGAGTACT
ACATTAACCATCGCAACCAGCGAGAACAGCAAATCCTGCAGTTCTTCGTT
CAGCGGCCCAACGAAAACTTGCAGGCTATGGACGTCGTGAAGGTGGTCTA
CAAGGAGACACCAGAAAACCTCTGGCCCGCCGCCGCCTATAACGTGAACC
ACCACCTAAGCAAGCTGGAGAAGGAAGGAAAGCTGCGGGTCAGCAAGTCT
GCGGATGA
BS06108.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-PA | 879 | CG12375-RA | 1..842 | 17..858 | 4185 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-RA | 1165 | CG12375-RA | 152..993 | 17..858 | 4195 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:46:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8125840..8126681 | 858..17 | 4195 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:46:27 has no hits.
BS06108.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:20 Download gff for
BS06108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:04 Download gff for
BS06108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:53:45 Download gff for
BS06108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 149..992 | 14..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:39:08 Download gff for
BS06108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 149..992 | 14..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:39:08 Download gff for
BS06108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8125841..8126684 | 14..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:53:45 Download gff for
BS06108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8125841..8126684 | 14..857 | 99 | | Minus |
BS06108.complete Sequence
911 bp (911 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635355
> BS06108.complete
GAAGTTATCAGTCGACATGGCGCTGATTCCGGCTGTTACCAGACTCACCT
CCTCCGTAATTCGGATACTGGGTTGTAATCCCAGTGCCATGACGCTCCAG
GGCACCAATACGTACCTCCTCGGCAGTGGCAGTAGGAGAATCTTGATCGA
CACTGGTGACGAAGACGTGCCGCAGTACATCGCTCACCTGGGAGATGTGC
TACAGCAGGAAAAGGCCTCCATCGACACCATCCTGCTGACCCACTGGCAC
CACGACCATGTCGGCGGTGTAAAGAGCATTGTGGGTACTAAATTGGCCGA
AAAGGATTGCCGCGTATTCAAGTTTGGGCGTACAGATGCTCCAGATGTGT
GCCCCGAGATACCGACGGATATCAAACTCCATCCGCTAGCACACAACCAA
GAGTTCACCACGGAGGGGGCGAATGTGCGGGTGGTTCACACACCCGGTCA
CACCACTGATCATGTGGTGCTGGCCATGAACGAGGGCACACTCTTCAGCG
GCGATTGCATCCTTGGCGAGGGCACCGCCGTCTTCGAGGACCTATTTGAG
TACATGAAAAGCCTGGAGAAGATACTAGACATCAAGCCGCAGCGTATCTT
TCCAGGCCATGGCAATGTCATTGAGGAACCAATTGGCAAGATTGAGTACT
ACATTAACCATCGCAACCAGCGAGAACAGCAAATCCTGCAGTTCTTCGTT
CAGCGGCCCAACGAAAACTTGCAGGCTATGGACGTCGTGAAGGTGGTCTA
CAAGGAGACACCAGAAAACCTCTGGCCCGCCGCCGCCTATAACGTGAACC
ACCACCTAAGCAAGCTGGAGAAGGAGGGAAAGCTGCGGGTCAGCAAGTCT
GCGGATGAAGAGTTCTATGTGTACCAGCCAACCAGTGCGCTCTAAAAGCT
TTCTAGACCAT
BS06108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-RA | 879 | CG12375-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-RA | 1165 | CG12375-RA | 152..1031 | 17..896 | 4400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8125802..8126681 | 896..17 | 4400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:48:05 has no hits.
BS06108.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:20 Download gff for
BS06108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:15 Download gff for
BS06108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 118..1005 | 14..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:47 Download gff for
BS06108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 152..1028 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:20 Download gff for
BS06108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 118..1005 | 14..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:17 Download gff for
BS06108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 152..1028 | 17..893 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:17 Download gff for
BS06108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8125805..8126681 | 17..893 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:47 Download gff for
BS06108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8125805..8126681 | 17..893 | 100 | | Minus |
BS06108.pep Sequence
Translation from 16 to 894
> BS06108.pep
MALIPAVTRLTSSVIRILGCNPSAMTLQGTNTYLLGSGSRRILIDTGDED
VPQYIAHLGDVLQQEKASIDTILLTHWHHDHVGGVKSIVGTKLAEKDCRV
FKFGRTDAPDVCPEIPTDIKLHPLAHNQEFTTEGANVRVVHTPGHTTDHV
VLAMNEGTLFSGDCILGEGTAVFEDLFEYMKSLEKILDIKPQRIFPGHGN
VIEEPIGKIEYYINHRNQREQQILQFFVQRPNENLQAMDVVKVVYKETPE
NLWPAAAYNVNHHLSKLEKEGKLRVSKSADEEFYVYQPTSAL*
BS06108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-PA | 292 | CG12375-PA | 1..292 | 1..292 | 1536 | 100 | Plus |
