Clone Sequence Records
BS06109.3prime Sequence
474 bp (473 high quality bases) assembled on 2005-12-03
> BS06109.3prime
ATGGTCTAGAAAGCTTTCAGAACTGACCCCAATGCTGTGGCAGACCCATA
CCATTCGGGTAGTTCTGACTGGTCATATTCTCGACGAGGTAATTTGCAAA
GTACTCGCCTCGCTGATCCTCGCGAACGTGACGCATTGCCCTCGTGACAC
TGGCCATTAGGAGGCACATCTCCGGCTCCTGACTTTGGCATGGCGGAGTG
GGTTTGGTCATAGTGTAGAAACTTCGTTTCTTCCGCCGACGTGGTGGTCC
ATTTGGCCCTCCTTGCGCCGGAAAAACGCCCAACGGTGGCTCTTGAGGAG
CGTCCAGGAGTATGTCCATCTGACGATTGACTCCCAGGCGCTGCTGCTGC
TGTCCATCCTCCAATGTGTCCAAGTCATCGCCAGCATCTTCATTCACCGC
GTCGCCGACTCGATCGATTAGCTGCTCATCGTACAGATCGTGTCCGTGTA
GTACGTCCATGTCGACTGATAACT
BS06109.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8489-PA | 444 | CG8489-RA | 1..444 | 460..17 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| soti-RA | 1037 | CG8489-RA | 171..614 | 460..17 | 2220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:16:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14381086..14381529 | 17..460 | 2220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:17:00 has no hits.
BS06109.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:22 Download gff for
BS06109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-PA | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:05 Download gff for
BS06109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-PA | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:04:05 Download gff for
BS06109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 169..614 | 17..463 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:57 Download gff for
BS06109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 169..614 | 17..463 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:57 Download gff for
BS06109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14381086..14381534 | 17..466 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:04:05 Download gff for
BS06109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10206808..10207256 | 17..466 | 99 | <- | Plus |
BS06109.5prime Sequence
474 bp (473 high quality bases) assembled on 2005-12-03
> BS06109.5prime
GAAGTTATCAGTCGACATGGACGTACTACACGGACACGATCTGTACGATG
AGCAGCTAATCGATCGAGTCGGCGACGCGGTGAATGAAGATGCTGGCGAT
GACTTGGACACATTGGAGGATGGACAGCAGCAGCAGCGCCTGGGAGTCAA
TCGTCAGATGGACATACTCCTGGACGCTCCTCAAGAGCCACCGTTGGGCG
TTTTTCCGGCGCAAGGAGGGCCAAATGGACCACCACGTCGGCGGAAGAAA
CGAAGTTTCTACACTATGACCAAACCCACTCCGCCATGCCAAAGTCAGGA
GCCGGAGATGTGCCTCCTAATGGCCAGTGTCACGAGGGCAATGCGTCACG
TTCGCGAGGATCAGCGAGGCGAGTACTTTGCAAATTACCTCGTCGAGAAT
ATGACCAGTCAGAACTACCCGAATGGTATGGGTCTGCCACAGCATTGGGG
TCAGTTCTGAAAGCTTTCTAGACC
BS06109.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8489-PA | 444 | CG8489-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| soti-RA | 1037 | CG8489-RA | 171..614 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14381086..14381529 | 460..17 | 2220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:07:45 has no hits.
BS06109.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:23 Download gff for
BS06109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:07 Download gff for
BS06109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:25 Download gff for
BS06109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 169..614 | 14..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:36 Download gff for
BS06109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 169..614 | 14..460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:36 Download gff for
BS06109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14381086..14381534 | 11..460 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:25 Download gff for
BS06109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10206808..10207256 | 11..460 | 99 | <- | Minus |
BS06109.complete Sequence
476 bp (476 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635356
> BS06109.complete
GAAGTTATCAGTCGACATGGACGTACTACACGGACACGATCTGTACGATG
AGCAGCTAATCGATCGAGTCGGCGACGCGGTGAATGAAGATGCTGGCGAT
GACTTGGACACATTGGAGGATGGACAGCAGCAGCAGCGCCTGGGAGTCAA
TCGTCAGATGGACATACTCCTGGACGCTCCTCAAGAGCCACCGTTGGGCG
TTTTTCCGGCGCAAGGAGGGCCAAATGGACCACCACGTCGGCGGAAGAAA
CGAAGTTTCTACACTATGACCAAACCCACTCCGCCATGCCAAAGTCAGGA
GCCGGAGATGTGCCTCCTAATGGCCAGTGTCACGAGGGCAATGCGTCACG
TTCGCGAGGATCAGCGAGGCGAGTACTTTGCAAATTACCTCGTCGAGAAT
ATGACCAGTCAGAACTACCCGAATGGTATGGGTCTGCCACAGCATTGGGG
TCAGTTCTGAAAGCTTTCTAGACCAT
BS06109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| soti-RA | 444 | CG8489-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| soti-RA | 1037 | CG8489-RA | 171..614 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14381086..14381529 | 460..17 | 2220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:11:01 has no hits.
BS06109.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:21 Download gff for
BS06109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-RA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:20 Download gff for
BS06109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-RA | 169..614 | 14..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:58 Download gff for
BS06109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 171..613 | 17..459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:22 Download gff for
BS06109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-RA | 169..614 | 14..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:05 Download gff for
BS06109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 171..613 | 17..459 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:05 Download gff for
BS06109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14381087..14381529 | 17..459 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:58 Download gff for
BS06109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10206809..10207251 | 17..459 | 100 | | Minus |
BS06109.pep Sequence
Translation from 16 to 459
> BS06109.pep
MDVLHGHDLYDEQLIDRVGDAVNEDAGDDLDTLEDGQQQQRLGVNRQMDI
LLDAPQEPPLGVFPAQGGPNGPPRRRKKRSFYTMTKPTPPCQSQEPEMCL
LMASVTRAMRHVREDQRGEYFANYLVENMTSQNYPNGMGLPQHWGQF*
BS06109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| soti-PA | 147 | CG8489-PA | 1..147 | 1..147 | 800 | 100 | Plus |
