Clone Sequence Records
BS06111.3prime Sequence
849 bp (848 high quality bases) assembled on 2005-12-03
> BS06111.3prime
ATGGTCTAGAAAGGGGCTTCTAAGGACCACAAATAGACTCAAAGGGCATG
ATGCAACCATTCGGCATGACTAGAAAAAGGATGATGGGTGCCTCCGACCC
GATCTTAGAGGGAGAGTTGTCTACATCGGAATCCTTGTACACCTCGTACA
CCATGCACCCATCGTTGCCACGAATCAAACGGGTCCACAACCACTTTTGG
TCCTTGTGTCCTTGGGCAATCTGGGATGTAAGCTTGTCTTTCAGCTGTTG
ACAGGCCACCGAGCAGGTGGAAATTGATCGGCTTATCTGTTCCCTTATCG
TGGCGCTGCCCGCCTTATTTCTCAACGGAATATCCTCCGCCGGGTGATCG
AAGTCCACCCTGGGAGTACGCTGGCGGGGACAACAGGCAGCGGAACTAAG
CCGACTCGCGGTCTTGAAGCAGGAAGATTTCGGAGTATCCATTGGACTGC
AGGGCACTAGTGGAGCTTTTGGACTGGCGCAGCATCTCGTTGGCTTGGGA
TAACAACAGATAGTCGACGGCTTGGAGCAGCATGTACTCCAGGCCGATGA
AGATGGATAAGCCGAGCTGCTTCCGGAACTGCAAGGGCTTGGTGCACAGG
GTGCTGGTGGTGGGCAGGATTCCTTCTTAAAAGCTGATCCTTCATTCGAC
AACTCCAGCAATGGAATTATTTTCGTGGCGCCCGAAAGATAGAGGATGCG
GTCCAGGATCGTCATGATGACCTCATCTGGATGCGGGCCCAGCATGTCGA
AGAGTGGAGCCTGCGGCTTCTTCCCCAATCTGAGACCCGTTGGACACTCA
CAACGCGTCGTCTGAGTGGCACAACAGGATTTCATGTCGACTGATAACT
BS06111.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3557-PA | 816 | CG3557-RA | 1..816 | 835..20 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3557-RA | 977 | CG3557-RA | 90..906 | 836..20 | 4085 | 100 | Minus |
CG3557-RB | 971 | CG3557-RB | 90..900 | 836..20 | 3985 | 99.3 | Minus |
CG3557-RC | 941 | CG3557-RC | 285..870 | 605..20 | 2930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2384832..2385453 | 20..641 | 3110 | 100 | Plus |
2L | 23513712 | 2L | 2385506..2385703 | 639..836 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:53:11 has no hits.
BS06111.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:23 Download gff for
BS06111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-PA | 1..816 | 20..835 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:08 Download gff for
BS06111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-PA | 1..816 | 20..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:47:29 Download gff for
BS06111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-RA | 80..910 | 17..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:55:00 Download gff for
BS06111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-RA | 80..910 | 17..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:55:00 Download gff for
BS06111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2384828..2385451 | 17..639 | 99 | <- | Plus |
2L | 2385507..2385713 | 640..843 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:47:29 Download gff for
BS06111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2384828..2385451 | 17..639 | 99 | <- | Plus |
arm_2L | 2385507..2385713 | 640..843 | 98 | | Plus |
BS06111.5prime Sequence
830 bp (712 high quality bases) assembled on 2005-12-03
> BS06111.5prime
GAAGTTATCAGTCGACATGAAATCCTGTTGTGCCACTCAGACGACGCGTT
GTGAGTGTCCAACGGGTCTCAGATTGGGGAAGAAGCCGCAGGCTCCACTC
TTCGACATGCTGGGCCCGCATCCAGATGAGGTCATCATGACGATCCTGGA
CCGCATCCTCTATCTTTCGGGCGCCACGAAAATAATTCCATTGCTGGAGT
TGTCGAATGAAGGATCAGCTTTTAAGAAGGAATCCTGCCCACCACCAGCA
CCCTGTGCACCAAGCCCTTGCAGTTCCGGAAGCAGCTCGGCTTATCCATC
TTCATCGGCCTGGAGTACATGCTGCTCCAAGCCGTCGACTATCTGTTGTT
ATCCCAAGCCAACGAGATGCTGCGCCAGTCCAAAAGCTCCACTAGTGCCC
TGCAGTCCAATGGATACTCCGAAATCTTCCTGCTTCAAGACCGCGAGTCG
GCTTAGTTCCGCTGCCTGTTGTCCCCGCCAGCGTACTCCCAGGGTGGACT
TCGATCACCCGGCGGAGGATATTCCGTTGAGAAATAAGGCGGGCAGCGCC
ACGATAAGGGAACAGATAAGCCGATCAATTTCCACCTGCTCGGTGGCCTG
TCAACAGCTGAAAGACAAGCTTACATCCCAGATTGCCCAAGGACACAAGG
ACCAAAAGTGGTTGTGGACCCGTTTGATTCGTGGCAACGATGGGTGCATG
GTGTACGAGGTGTACAAGGATTCCGATGTAGACAACTCTCCCTCTAAGAT
CGGGTCGGAGGCACCCATCATCCTTTTTCTAGTCATGCCGAATGGTTGCA
TCATGCCCTTTGAGTCTATTTGTGGTCCTT
BS06111.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3557-PA | 816 | CG3557-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3557-RA | 977 | CG3557-RA | 90..904 | 16..830 | 4075 | 100 | Plus |
CG3557-RB | 971 | CG3557-RB | 90..898 | 16..830 | 3975 | 99.3 | Plus |
CG3557-RC | 941 | CG3557-RC | 285..868 | 247..830 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2384834..2385453 | 830..211 | 3100 | 100 | Minus |
2L | 23513712 | 2L | 2385506..2385703 | 213..16 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:52:04 has no hits.
BS06111.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:24 Download gff for
BS06111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:09 Download gff for
BS06111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:11:39 Download gff for
BS06111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-RA | 80..904 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:21 Download gff for
BS06111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-RA | 80..904 | 9..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:21 Download gff for
BS06111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2385507..2385713 | 9..212 | 98 | | Minus |
2L | 2384834..2385451 | 213..830 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:11:39 Download gff for
BS06111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2385507..2385713 | 9..212 | 98 | | Minus |
arm_2L | 2384834..2385451 | 213..830 | 100 | <- | Minus |
BS06111.complete Sequence
851 bp assembled on 2008-08-15
GenBank Submission: FJ635357
> BS06111.complete
GAAGTTATCAGTCGACATGAAATCCTGTTGTGCCACTCAGACGACGCGTT
GTGAGTGTCCAACGGGTCTCAGATTGGGGAAGAAGCCGCAGGCTCCACTC
TTCGACATGCTGGGCCCGCATCCAGATGAGGTCATCATGACGATCCTGGA
CCGCATCCTCTATCTTTCGGGCGCCACGAAAATAATTCCATTGCTGGAGT
TGTCGAATGAAGGATCAGCTTTTAAGAAGGAATCCTGCCCACCACCAGCA
CCCTGTGCACCAAGCCCTTGCAGTTCCGGAAGCAGCTCGGCTTATCCATC
TTCATCGGCCTGGAGTACATGCTGCTCCAAGCCGTCGACTATCTGTTGTT
ATCCCAAGCCAACGAGATGCTGCGCCAGTCCAAAAGCTCCACTAGTGCCC
TGCAGTCCAATGGATACTCCGAAATCTTCCTGCTTCAAGACCGCGAGTCG
GCTTAGTTCCGCTGCCTGTTGTCCCCGCCAGCGTACTCCCAGGGTGGACT
TCGATCACCCGGCGGAGGATATTCCGTTGAGAAATAAGGCGGGCAGCGCC
ACGATAAGGGAACAGATAAGCCGATCAATTTCCACCTGCTCGGTGGCCTG
TCAACAGCTGAAAGACAAGCTTACATCCCAGATTGCCCAAGGACACAAGG
ACCAAAAGTGGTTGTGGACCCGTTTGATTCGTGGCAACGATGGGTGCATG
GTGTACGAGGTGTACAAGGATTCCGATGTAGACAACTCTCCCTCTAAGAT
CGGGTCGGAGGCACCCATCATCCTTTTTCTAGTCATGCCGAATGGTTGCA
TCATGCCCTTTGAGTCTATTTGTGGTCCTTAGAAGCCCCTTTCTAGACCA
T
BS06111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3557-RA | 816 | CG3557-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
CG3557-RB | 810 | CG3557-PB | 1..810 | 17..832 | 3955 | 99.3 | Plus |
CG3557-RC | 780 | CG3557-PC | 195..780 | 247..832 | 2930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3557-RA | 977 | CG3557-RA | 90..906 | 16..832 | 4085 | 100 | Plus |
CG3557-RB | 971 | CG3557-RB | 90..900 | 16..832 | 3960 | 99.3 | Plus |
CG3557-RC | 941 | CG3557-RC | 285..870 | 247..832 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2384832..2385453 | 832..211 | 3110 | 100 | Minus |
2L | 23513712 | 2L | 2385506..2385703 | 213..16 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:07:10 has no hits.
BS06111.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:49 Download gff for
BS06111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-RA | 80..910 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:25 Download gff for
BS06111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-RA | 91..910 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:01 Download gff for
BS06111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-RA | 91..910 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:47 Download gff for
BS06111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3557-RA | 91..910 | 17..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:47 Download gff for
BS06111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2384828..2385451 | 213..835 | 99 | <- | Minus |
2L | 2385507..2385702 | 17..212 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:25 Download gff for
BS06111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2384828..2385451 | 213..835 | 99 | <- | Minus |
arm_2L | 2385507..2385702 | 17..212 | 100 | | Minus |
BS06111.pep Sequence
Translation from 16 to 831
> BS06111.pep
MKSCCATQTTRCECPTGLRLGKKPQAPLFDMLGPHPDEVIMTILDRILYL
SGATKIIPLLELSNEGSAFKKESCPPPAPCAPSPCSSGSSSAYPSSSAWS
TCCSKPSTICCYPKPTRCCASPKAPLVPCSPMDTPKSSCFKTASRLSSAA
CCPRQRTPRVDFDHPAEDIPLRNKAGSATIREQISRSISTCSVACQQLKD
KLTSQIAQGHKDQKWLWTRLIRGNDGCMVYEVYKDSDVDNSPSKIGSEAP
IILFLVMPNGCIMPFESICGP*
BS06111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3557-PA | 271 | CG3557-PA | 1..271 | 1..271 | 1479 | 100 | Plus |
CG3557-PB | 269 | CG3557-PB | 1..269 | 1..271 | 1456 | 99.3 | Plus |
CG3557-PC | 259 | CG3557-PC | 1..259 | 1..271 | 1387 | 95.6 | Plus |