Clone BS06111 Report

Search the DGRC for BS06111

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG3557-RA
Protein status:BS06111.pep: full length peptide match
Sequenced Size:851

Clone Sequence Records

BS06111.3prime Sequence

849 bp (848 high quality bases) assembled on 2005-12-03

> BS06111.3prime
ATGGTCTAGAAAGGGGCTTCTAAGGACCACAAATAGACTCAAAGGGCATG
ATGCAACCATTCGGCATGACTAGAAAAAGGATGATGGGTGCCTCCGACCC
GATCTTAGAGGGAGAGTTGTCTACATCGGAATCCTTGTACACCTCGTACA
CCATGCACCCATCGTTGCCACGAATCAAACGGGTCCACAACCACTTTTGG
TCCTTGTGTCCTTGGGCAATCTGGGATGTAAGCTTGTCTTTCAGCTGTTG
ACAGGCCACCGAGCAGGTGGAAATTGATCGGCTTATCTGTTCCCTTATCG
TGGCGCTGCCCGCCTTATTTCTCAACGGAATATCCTCCGCCGGGTGATCG
AAGTCCACCCTGGGAGTACGCTGGCGGGGACAACAGGCAGCGGAACTAAG
CCGACTCGCGGTCTTGAAGCAGGAAGATTTCGGAGTATCCATTGGACTGC
AGGGCACTAGTGGAGCTTTTGGACTGGCGCAGCATCTCGTTGGCTTGGGA
TAACAACAGATAGTCGACGGCTTGGAGCAGCATGTACTCCAGGCCGATGA
AGATGGATAAGCCGAGCTGCTTCCGGAACTGCAAGGGCTTGGTGCACAGG
GTGCTGGTGGTGGGCAGGATTCCTTCTTAAAAGCTGATCCTTCATTCGAC
AACTCCAGCAATGGAATTATTTTCGTGGCGCCCGAAAGATAGAGGATGCG
GTCCAGGATCGTCATGATGACCTCATCTGGATGCGGGCCCAGCATGTCGA
AGAGTGGAGCCTGCGGCTTCTTCCCCAATCTGAGACCCGTTGGACACTCA
CAACGCGTCGTCTGAGTGGCACAACAGGATTTCATGTCGACTGATAACT

BS06111.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-PA 816 CG3557-RA 1..816 835..20 4080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-RA 977 CG3557-RA 90..906 836..20 4085 100 Minus
CG3557-RB 971 CG3557-RB 90..900 836..20 3985 99.3 Minus
CG3557-RC 941 CG3557-RC 285..870 605..20 2930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2384832..2385453 20..641 3110 100 Plus
2L 23513712 2L 2385506..2385703 639..836 990 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:53:11 has no hits.

BS06111.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:23 Download gff for BS06111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-PA 1..816 20..835 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:08 Download gff for BS06111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-PA 1..816 20..835 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:47:29 Download gff for BS06111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 80..910 17..843 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:55:00 Download gff for BS06111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 80..910 17..843 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:55:00 Download gff for BS06111.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2384828..2385451 17..639 99 <- Plus
2L 2385507..2385713 640..843 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:47:29 Download gff for BS06111.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2384828..2385451 17..639 99 <- Plus
arm_2L 2385507..2385713 640..843 98   Plus

BS06111.5prime Sequence

830 bp (712 high quality bases) assembled on 2005-12-03

> BS06111.5prime
GAAGTTATCAGTCGACATGAAATCCTGTTGTGCCACTCAGACGACGCGTT
GTGAGTGTCCAACGGGTCTCAGATTGGGGAAGAAGCCGCAGGCTCCACTC
TTCGACATGCTGGGCCCGCATCCAGATGAGGTCATCATGACGATCCTGGA
CCGCATCCTCTATCTTTCGGGCGCCACGAAAATAATTCCATTGCTGGAGT
TGTCGAATGAAGGATCAGCTTTTAAGAAGGAATCCTGCCCACCACCAGCA
CCCTGTGCACCAAGCCCTTGCAGTTCCGGAAGCAGCTCGGCTTATCCATC
TTCATCGGCCTGGAGTACATGCTGCTCCAAGCCGTCGACTATCTGTTGTT
ATCCCAAGCCAACGAGATGCTGCGCCAGTCCAAAAGCTCCACTAGTGCCC
TGCAGTCCAATGGATACTCCGAAATCTTCCTGCTTCAAGACCGCGAGTCG
GCTTAGTTCCGCTGCCTGTTGTCCCCGCCAGCGTACTCCCAGGGTGGACT
TCGATCACCCGGCGGAGGATATTCCGTTGAGAAATAAGGCGGGCAGCGCC
ACGATAAGGGAACAGATAAGCCGATCAATTTCCACCTGCTCGGTGGCCTG
TCAACAGCTGAAAGACAAGCTTACATCCCAGATTGCCCAAGGACACAAGG
ACCAAAAGTGGTTGTGGACCCGTTTGATTCGTGGCAACGATGGGTGCATG
GTGTACGAGGTGTACAAGGATTCCGATGTAGACAACTCTCCCTCTAAGAT
CGGGTCGGAGGCACCCATCATCCTTTTTCTAGTCATGCCGAATGGTTGCA
TCATGCCCTTTGAGTCTATTTGTGGTCCTT

BS06111.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-PA 816 CG3557-RA 1..814 17..830 4070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-RA 977 CG3557-RA 90..904 16..830 4075 100 Plus
CG3557-RB 971 CG3557-RB 90..898 16..830 3975 99.3 Plus
CG3557-RC 941 CG3557-RC 285..868 247..830 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2384834..2385453 830..211 3100 100 Minus
2L 23513712 2L 2385506..2385703 213..16 990 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:52:04 has no hits.

BS06111.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:24 Download gff for BS06111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-PA 1..814 17..830 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:09 Download gff for BS06111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-PA 1..814 17..830 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:11:39 Download gff for BS06111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 80..904 9..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:21 Download gff for BS06111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 80..904 9..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:21 Download gff for BS06111.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2385507..2385713 9..212 98   Minus
2L 2384834..2385451 213..830 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:11:39 Download gff for BS06111.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2385507..2385713 9..212 98   Minus
arm_2L 2384834..2385451 213..830 100 <- Minus

BS06111.complete Sequence

851 bp assembled on 2008-08-15

GenBank Submission: FJ635357

> BS06111.complete
GAAGTTATCAGTCGACATGAAATCCTGTTGTGCCACTCAGACGACGCGTT
GTGAGTGTCCAACGGGTCTCAGATTGGGGAAGAAGCCGCAGGCTCCACTC
TTCGACATGCTGGGCCCGCATCCAGATGAGGTCATCATGACGATCCTGGA
CCGCATCCTCTATCTTTCGGGCGCCACGAAAATAATTCCATTGCTGGAGT
TGTCGAATGAAGGATCAGCTTTTAAGAAGGAATCCTGCCCACCACCAGCA
CCCTGTGCACCAAGCCCTTGCAGTTCCGGAAGCAGCTCGGCTTATCCATC
TTCATCGGCCTGGAGTACATGCTGCTCCAAGCCGTCGACTATCTGTTGTT
ATCCCAAGCCAACGAGATGCTGCGCCAGTCCAAAAGCTCCACTAGTGCCC
TGCAGTCCAATGGATACTCCGAAATCTTCCTGCTTCAAGACCGCGAGTCG
GCTTAGTTCCGCTGCCTGTTGTCCCCGCCAGCGTACTCCCAGGGTGGACT
TCGATCACCCGGCGGAGGATATTCCGTTGAGAAATAAGGCGGGCAGCGCC
ACGATAAGGGAACAGATAAGCCGATCAATTTCCACCTGCTCGGTGGCCTG
TCAACAGCTGAAAGACAAGCTTACATCCCAGATTGCCCAAGGACACAAGG
ACCAAAAGTGGTTGTGGACCCGTTTGATTCGTGGCAACGATGGGTGCATG
GTGTACGAGGTGTACAAGGATTCCGATGTAGACAACTCTCCCTCTAAGAT
CGGGTCGGAGGCACCCATCATCCTTTTTCTAGTCATGCCGAATGGTTGCA
TCATGCCCTTTGAGTCTATTTGTGGTCCTTAGAAGCCCCTTTCTAGACCA
T

BS06111.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-RA 816 CG3557-PA 1..816 17..832 4080 100 Plus
CG3557-RB 810 CG3557-PB 1..810 17..832 3955 99.3 Plus
CG3557-RC 780 CG3557-PC 195..780 247..832 2930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-RA 977 CG3557-RA 90..906 16..832 4085 100 Plus
CG3557-RB 971 CG3557-RB 90..900 16..832 3960 99.3 Plus
CG3557-RC 941 CG3557-RC 285..870 247..832 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2384832..2385453 832..211 3110 100 Minus
2L 23513712 2L 2385506..2385703 213..16 990 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:07:10 has no hits.

BS06111.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:49 Download gff for BS06111.complete
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 80..910 9..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:25 Download gff for BS06111.complete
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 91..910 17..835 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:01 Download gff for BS06111.complete
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 91..910 17..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:47 Download gff for BS06111.complete
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 91..910 17..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:47 Download gff for BS06111.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2384828..2385451 213..835 99 <- Minus
2L 2385507..2385702 17..212 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:25 Download gff for BS06111.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2384828..2385451 213..835 99 <- Minus
arm_2L 2385507..2385702 17..212 100   Minus

BS06111.pep Sequence

Translation from 16 to 831

> BS06111.pep
MKSCCATQTTRCECPTGLRLGKKPQAPLFDMLGPHPDEVIMTILDRILYL
SGATKIIPLLELSNEGSAFKKESCPPPAPCAPSPCSSGSSSAYPSSSAWS
TCCSKPSTICCYPKPTRCCASPKAPLVPCSPMDTPKSSCFKTASRLSSAA
CCPRQRTPRVDFDHPAEDIPLRNKAGSATIREQISRSISTCSVACQQLKD
KLTSQIAQGHKDQKWLWTRLIRGNDGCMVYEVYKDSDVDNSPSKIGSEAP
IILFLVMPNGCIMPFESICGP*

BS06111.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-PA 271 CG3557-PA 1..271 1..271 1479 100 Plus
CG3557-PB 269 CG3557-PB 1..269 1..271 1456 99.3 Plus
CG3557-PC 259 CG3557-PC 1..259 1..271 1387 95.6 Plus