Clone Sequence Records
BS06116.3prime Sequence
903 bp (847 high quality bases) assembled on 2005-12-03
> BS06116.3prime
ATGGTCTAGAAAGCTTCTAATAGTGCTGCTGTTGATGCCGCTTCTTCTCC
AGATACTTCTCCCAGTCGACGGCAACGCGATTGTAGATACCCATGGCGGC
ACGTGCATCCTCCACGGAATTATGCTCGCCCGTTTGGATCTCCTGACCCA
GAACGGCCTTTGTCAGGCGTTTTAAGCTGGGCGTGTGGGTATTAGAGATG
AGTTTGCACAGCGGCTTATAATGCGACGTATCACGAATGTCATGGAACGG
ATGGCGGATGCCCAGTACGGCAAGATCGTTGCGCAGGCCGTGTCCCACCA
GAATGCGGCCATGTATCAGCTTCATCACTTCGTTTTGCACGGCGGCAAAG
TCCTCACCGTTAGCGATGTCCTGCGGCCGAATGCCGGACACGCTGGTGCG
GTAGTCGGTGACCTCCTTTCGCGGCTTCACATACTTGTCCAGCAGCACGT
GTCCCATGCGATTCACGATGGACACGCGTGCCAGCATGTCGTCCCGTGTG
TTGTGTCCCACGCCCACCATCTCGCAGTCCATGGCCAAAATGCGATTGCG
GTGTGCCTTCTTTTTCATGCGCATGCGTGCCGATTTGCTTAGTGGTGCTG
ACTCCGTCGCCTTGGCATCCTGGTTTTCACTTCCAGCTGCTGCTGCTGCT
CCACCGCCAGCAGCGGCCATCCAGTTGGAGCCGGCTGCCCGGCGACTTGT
GTTCACCTGTTGCACCTGTAGGCGCTCCATGGAGGCTTGCAGCTTGCGTT
GATTGTGTTGCGGGGAAACCACATTTTTCGTGCTGTCCGTGGTGTTTTTG
TTGTTGGCAGACCCGCTTCTGCTGCTGTCCAAGTTATTGGCCCGGCTACG
ATTCATGTCGAACTGCTTCTGGCGTGGCGTAGCGGACATGTCGACTGATA
ACT
BS06116.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6833-PA | 873 | CG6833-RA | 1..873 | 889..17 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6833-RB | 1187 | CG6833-RB | 53..931 | 890..12 | 4380 | 99.9 | Minus |
CG6833-RA | 1264 | CG6833-RA | 130..1008 | 890..12 | 4380 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14051335..14052213 | 890..12 | 4380 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-02 18:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1058..1100 | 55..13 | 116 | 74.4 | Minus |
BS06116.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:29 Download gff for
BS06116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-PA | 1..873 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:17 Download gff for
BS06116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-PA | 1..873 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:09:17 Download gff for
BS06116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-RA | 127..1012 | 8..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:51:24 Download gff for
BS06116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-RA | 127..1012 | 8..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:51:24 Download gff for
BS06116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14051332..14052217 | 8..893 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:09:17 Download gff for
BS06116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14044432..14045317 | 8..893 | 99 | | Minus |
BS06116.5prime Sequence
898 bp (760 high quality bases) assembled on 2005-12-03
> BS06116.5prime
GAAGTTATCAGTCGACATGTCCGCTACGCCACGCCAGAAGCAGTTCGACA
TGAATCGTAGCCGGGCCAATAACTTGGACAGCAGCAGAAGCGGGTCTGCC
AACAACAAAAACACCACGGACAGCACGAAAAATGTGGTTTCCCCGCAACA
CAATCAACGCAAGCTGCAAGCCTCCATGGAGCGCCTACAGGTGCAACAGG
TGAACACAAGTCGCCGGGCAGCCGGCTCCAACTGGATGGCCGCTGCTGGC
GGTGGAGCAGCAGCAGCAGCTGGAAGTGAAAACCAGGATGCCAAGGCGAC
GGAGTCAGCACCACTAAGCAAATCGGCACGCATGCGCATGAAAAAGAAGG
CACACCGCAATCGCATTTTGGCCATGGACTGCGAGATGGTGGGCGTGGGA
CACAACACACGGGACGACATGCTGGCACGCGTGTCCATCGTGAATCGCAT
GGGACACGTGCTGCTGGACAAGTATGTGAAGCCGCGAAAGGAGGTCACCG
ACTACCGCACCAGCGTGTCCGGCATTCGGCCGCAGGACATCGCTAACGGT
GAGGACTTTGCCGCCGTGCAAAACGAAGTGATGAAGCTGATACATGGCCG
CATTCTGGTGGGACACGGCCTGCGCAACGATCTTGCCGTACTGGGCATCC
GCCATCCGTTCCATGACATTCGTGATACGTCGCATTATAAGCCGCTGTGC
AAACTCATCTCTAATACCCACACGCCCAGCTTAAAACGCCTGACAAAGGC
CGTTCTGGGTCAGGAGATCCAAACGGGCGAGCATAATTCCGTGGAGGATG
CACGTGCCGCCATGGGTATCTACAATCGCGTTGCCGTCGACTGGGAGAGT
ATCTGGAGAAGAAGCGCATCACAGCAGCACTATTAGAAGCTTCTAGAC
BS06116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6833-PA | 873 | CG6833-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6833-RB | 1187 | CG6833-RB | 53..931 | 16..891 | 4305 | 99.5 | Plus |
CG6833-RA | 1264 | CG6833-RA | 130..1008 | 16..891 | 4305 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14051335..14052213 | 16..891 | 4230 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:51:55 has no hits.
BS06116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:31 Download gff for
BS06116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-PA | 1..873 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:18 Download gff for
BS06116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-PA | 1..873 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:11:36 Download gff for
BS06116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-RA | 127..1011 | 13..898 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:20 Download gff for
BS06116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-RA | 127..1011 | 13..898 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:20 Download gff for
BS06116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14051332..14052216 | 13..898 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:11:36 Download gff for
BS06116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14044432..14045316 | 13..898 | 98 | | Plus |
BS06116.complete Sequence
905 bp (905 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635358
> BS06116.complete
GAAGTTATCAGTCGACATGTCCGCTACGCCACGCCAGAAGCAGTTCGACA
TGAATCGTAGCCGGGCCAATAACTTGGACAGCAGCAGAAGCGGGTCTGCC
AACAACAAAAACACCACGGACAGCACGAAAAATGTGGTTTCCCCGCAACA
CAATCAACGCAAGCTGCAAGCCTCCATGGAGCGCCTACAGGTGCAACAGG
TGAACACAAGTCGCCGGGCAGCCGGCTCCAACTGGATGGCCGCTGCTGGC
GGTGGAGCAGCAGCAGCAGCTGGAAGTGAAAACCAGGATGCCAAGGCGAC
GGAGTCAGCACCACTAAGCAAATCGGCACGCATGCGCATGAAAAAGAAGG
CACACCGCAATCGCATTTTGGCCATGGACTGCGAGATGGTGGGCGTGGGA
CACAACACACGGGACGACATGCTGGCACGCGTGTCCATCGTGAATCGCAT
GGGACACGTGCTGCTGGACAAGTATGTGAAGCCGCGAAAGGAGGTCACCG
ACTACCGCACCAGCGTGTCCGGCATTCGGCCGCAGGACATCGCTAACGGT
GAGGACTTTGCCGCCGTGCAAAACGAAGTGATGAAGCTGATACATGGCCG
CATTCTGGTGGGACACGGCCTGCGCAACGATCTTGCCGTACTGGGCATCC
GCCATCCGTTCCATGACATTCGTGATACGTCGCATTATAAGCCGCTGTGC
AAACTCATCTCTAATACCCACACGCCCAGCTTAAAACGCCTGACAAAGGC
CGTTCTGGGTCAGGAGATCCAAACGGGCGAGCATAATTCCGTGGAGGATG
CACGTGCCGCCATGGGTATCTACAATCGCGTTGCCGTCGACTGGGAGAAG
TATCTGGAGAAGAAGCGGCATCAACAGCAGCACTATTAGAAGCTTTCTAG
ACCAT
BS06116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6833-RB | 873 | CG6833-PB | 1..873 | 17..889 | 4365 | 100 | Plus |
CG6833-RA | 873 | CG6833-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6833-RB | 1187 | CG6833-RB | 53..931 | 16..894 | 4380 | 99.9 | Plus |
CG6833-RA | 1264 | CG6833-RA | 130..1008 | 16..894 | 4380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14051335..14052213 | 16..894 | 4380 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-27 14:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1058..1100 | 851..893 | 116 | 74.4 | Plus |
BS06116.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:59 Download gff for
BS06116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-RA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:51 Download gff for
BS06116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-RA | 93..978 | 13..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:21 Download gff for
BS06116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-RA | 131..1003 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:00 Download gff for
BS06116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-RA | 104..989 | 13..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:11 Download gff for
BS06116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6833-RA | 131..1003 | 17..889 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:11 Download gff for
BS06116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14051336..14052208 | 17..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:21 Download gff for
BS06116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14044436..14045308 | 17..889 | 100 | | Plus |
BS06116.pep Sequence
Translation from 16 to 888
> BS06116.pep
MSATPRQKQFDMNRSRANNLDSSRSGSANNKNTTDSTKNVVSPQHNQRKL
QASMERLQVQQVNTSRRAAGSNWMAAAGGGAAAAAGSENQDAKATESAPL
SKSARMRMKKKAHRNRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLL
DKYVKPRKEVTDYRTSVSGIRPQDIANGEDFAAVQNEVMKLIHGRILVGH
GLRNDLAVLGIRHPFHDIRDTSHYKPLCKLISNTHTPSLKRLTKAVLGQE
IQTGEHNSVEDARAAMGIYNRVAVDWEKYLEKKRHQQQHY*
BS06116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6833-PB | 290 | CG6833-PB | 1..290 | 1..290 | 1492 | 100 | Plus |
CG6833-PA | 290 | CG6833-PA | 1..290 | 1..290 | 1492 | 100 | Plus |
CG42666-PK | 742 | CG42666-PK | 575..723 | 117..266 | 203 | 35.9 | Plus |
CG42666-PI | 742 | CG42666-PI | 575..723 | 117..266 | 203 | 35.9 | Plus |
CG42666-PH | 742 | CG42666-PH | 575..723 | 117..266 | 203 | 35.9 | Plus |