Clone BS06116 Report

Search the DGRC for BS06116

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG6833-RA
Protein status:BS06116.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06116.3prime Sequence

903 bp (847 high quality bases) assembled on 2005-12-03

> BS06116.3prime
ATGGTCTAGAAAGCTTCTAATAGTGCTGCTGTTGATGCCGCTTCTTCTCC
AGATACTTCTCCCAGTCGACGGCAACGCGATTGTAGATACCCATGGCGGC
ACGTGCATCCTCCACGGAATTATGCTCGCCCGTTTGGATCTCCTGACCCA
GAACGGCCTTTGTCAGGCGTTTTAAGCTGGGCGTGTGGGTATTAGAGATG
AGTTTGCACAGCGGCTTATAATGCGACGTATCACGAATGTCATGGAACGG
ATGGCGGATGCCCAGTACGGCAAGATCGTTGCGCAGGCCGTGTCCCACCA
GAATGCGGCCATGTATCAGCTTCATCACTTCGTTTTGCACGGCGGCAAAG
TCCTCACCGTTAGCGATGTCCTGCGGCCGAATGCCGGACACGCTGGTGCG
GTAGTCGGTGACCTCCTTTCGCGGCTTCACATACTTGTCCAGCAGCACGT
GTCCCATGCGATTCACGATGGACACGCGTGCCAGCATGTCGTCCCGTGTG
TTGTGTCCCACGCCCACCATCTCGCAGTCCATGGCCAAAATGCGATTGCG
GTGTGCCTTCTTTTTCATGCGCATGCGTGCCGATTTGCTTAGTGGTGCTG
ACTCCGTCGCCTTGGCATCCTGGTTTTCACTTCCAGCTGCTGCTGCTGCT
CCACCGCCAGCAGCGGCCATCCAGTTGGAGCCGGCTGCCCGGCGACTTGT
GTTCACCTGTTGCACCTGTAGGCGCTCCATGGAGGCTTGCAGCTTGCGTT
GATTGTGTTGCGGGGAAACCACATTTTTCGTGCTGTCCGTGGTGTTTTTG
TTGTTGGCAGACCCGCTTCTGCTGCTGTCCAAGTTATTGGCCCGGCTACG
ATTCATGTCGAACTGCTTCTGGCGTGGCGTAGCGGACATGTCGACTGATA
ACT

BS06116.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6833-PA 873 CG6833-RA 1..873 889..17 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6833-RB 1187 CG6833-RB 53..931 890..12 4380 99.9 Minus
CG6833-RA 1264 CG6833-RA 130..1008 890..12 4380 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14051335..14052213 890..12 4380 99.9 Minus
Blast to na_te.dros performed 2015-02-02 18:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1058..1100 55..13 116 74.4 Minus

BS06116.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:29 Download gff for BS06116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6833-PA 1..873 17..889 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:17 Download gff for BS06116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6833-PA 1..873 17..889 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:09:17 Download gff for BS06116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 127..1012 8..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:51:24 Download gff for BS06116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 127..1012 8..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:51:24 Download gff for BS06116.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14051332..14052217 8..893 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:09:17 Download gff for BS06116.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14044432..14045317 8..893 99   Minus

BS06116.5prime Sequence

898 bp (760 high quality bases) assembled on 2005-12-03

> BS06116.5prime
GAAGTTATCAGTCGACATGTCCGCTACGCCACGCCAGAAGCAGTTCGACA
TGAATCGTAGCCGGGCCAATAACTTGGACAGCAGCAGAAGCGGGTCTGCC
AACAACAAAAACACCACGGACAGCACGAAAAATGTGGTTTCCCCGCAACA
CAATCAACGCAAGCTGCAAGCCTCCATGGAGCGCCTACAGGTGCAACAGG
TGAACACAAGTCGCCGGGCAGCCGGCTCCAACTGGATGGCCGCTGCTGGC
GGTGGAGCAGCAGCAGCAGCTGGAAGTGAAAACCAGGATGCCAAGGCGAC
GGAGTCAGCACCACTAAGCAAATCGGCACGCATGCGCATGAAAAAGAAGG
CACACCGCAATCGCATTTTGGCCATGGACTGCGAGATGGTGGGCGTGGGA
CACAACACACGGGACGACATGCTGGCACGCGTGTCCATCGTGAATCGCAT
GGGACACGTGCTGCTGGACAAGTATGTGAAGCCGCGAAAGGAGGTCACCG
ACTACCGCACCAGCGTGTCCGGCATTCGGCCGCAGGACATCGCTAACGGT
GAGGACTTTGCCGCCGTGCAAAACGAAGTGATGAAGCTGATACATGGCCG
CATTCTGGTGGGACACGGCCTGCGCAACGATCTTGCCGTACTGGGCATCC
GCCATCCGTTCCATGACATTCGTGATACGTCGCATTATAAGCCGCTGTGC
AAACTCATCTCTAATACCCACACGCCCAGCTTAAAACGCCTGACAAAGGC
CGTTCTGGGTCAGGAGATCCAAACGGGCGAGCATAATTCCGTGGAGGATG
CACGTGCCGCCATGGGTATCTACAATCGCGTTGCCGTCGACTGGGAGAGT
ATCTGGAGAAGAAGCGCATCACAGCAGCACTATTAGAAGCTTCTAGAC

BS06116.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6833-PA 873 CG6833-RA 1..832 17..848 4160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6833-RB 1187 CG6833-RB 53..931 16..891 4305 99.5 Plus
CG6833-RA 1264 CG6833-RA 130..1008 16..891 4305 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14051335..14052213 16..891 4230 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 04:51:55 has no hits.

BS06116.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:31 Download gff for BS06116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6833-PA 1..873 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:18 Download gff for BS06116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6833-PA 1..873 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:11:36 Download gff for BS06116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 127..1011 13..898 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:20 Download gff for BS06116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 127..1011 13..898 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:20 Download gff for BS06116.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14051332..14052216 13..898 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:11:36 Download gff for BS06116.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14044432..14045316 13..898 98   Plus

BS06116.complete Sequence

905 bp (905 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635358

> BS06116.complete
GAAGTTATCAGTCGACATGTCCGCTACGCCACGCCAGAAGCAGTTCGACA
TGAATCGTAGCCGGGCCAATAACTTGGACAGCAGCAGAAGCGGGTCTGCC
AACAACAAAAACACCACGGACAGCACGAAAAATGTGGTTTCCCCGCAACA
CAATCAACGCAAGCTGCAAGCCTCCATGGAGCGCCTACAGGTGCAACAGG
TGAACACAAGTCGCCGGGCAGCCGGCTCCAACTGGATGGCCGCTGCTGGC
GGTGGAGCAGCAGCAGCAGCTGGAAGTGAAAACCAGGATGCCAAGGCGAC
GGAGTCAGCACCACTAAGCAAATCGGCACGCATGCGCATGAAAAAGAAGG
CACACCGCAATCGCATTTTGGCCATGGACTGCGAGATGGTGGGCGTGGGA
CACAACACACGGGACGACATGCTGGCACGCGTGTCCATCGTGAATCGCAT
GGGACACGTGCTGCTGGACAAGTATGTGAAGCCGCGAAAGGAGGTCACCG
ACTACCGCACCAGCGTGTCCGGCATTCGGCCGCAGGACATCGCTAACGGT
GAGGACTTTGCCGCCGTGCAAAACGAAGTGATGAAGCTGATACATGGCCG
CATTCTGGTGGGACACGGCCTGCGCAACGATCTTGCCGTACTGGGCATCC
GCCATCCGTTCCATGACATTCGTGATACGTCGCATTATAAGCCGCTGTGC
AAACTCATCTCTAATACCCACACGCCCAGCTTAAAACGCCTGACAAAGGC
CGTTCTGGGTCAGGAGATCCAAACGGGCGAGCATAATTCCGTGGAGGATG
CACGTGCCGCCATGGGTATCTACAATCGCGTTGCCGTCGACTGGGAGAAG
TATCTGGAGAAGAAGCGGCATCAACAGCAGCACTATTAGAAGCTTTCTAG
ACCAT

BS06116.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6833-RB 873 CG6833-PB 1..873 17..889 4365 100 Plus
CG6833-RA 873 CG6833-PA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6833-RB 1187 CG6833-RB 53..931 16..894 4380 99.9 Plus
CG6833-RA 1264 CG6833-RA 130..1008 16..894 4380 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14051335..14052213 16..894 4380 99.9 Plus
Blast to na_te.dros performed 2014-11-27 14:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1058..1100 851..893 116 74.4 Plus

BS06116.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:59 Download gff for BS06116.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:51 Download gff for BS06116.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 93..978 13..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:21 Download gff for BS06116.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 131..1003 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:00 Download gff for BS06116.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 104..989 13..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:11 Download gff for BS06116.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 131..1003 17..889 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:11 Download gff for BS06116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14051336..14052208 17..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:21 Download gff for BS06116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14044436..14045308 17..889 100   Plus

BS06116.pep Sequence

Translation from 16 to 888

> BS06116.pep
MSATPRQKQFDMNRSRANNLDSSRSGSANNKNTTDSTKNVVSPQHNQRKL
QASMERLQVQQVNTSRRAAGSNWMAAAGGGAAAAAGSENQDAKATESAPL
SKSARMRMKKKAHRNRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLL
DKYVKPRKEVTDYRTSVSGIRPQDIANGEDFAAVQNEVMKLIHGRILVGH
GLRNDLAVLGIRHPFHDIRDTSHYKPLCKLISNTHTPSLKRLTKAVLGQE
IQTGEHNSVEDARAAMGIYNRVAVDWEKYLEKKRHQQQHY*

BS06116.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6833-PB 290 CG6833-PB 1..290 1..290 1492 100 Plus
CG6833-PA 290 CG6833-PA 1..290 1..290 1492 100 Plus
CG42666-PK 742 CG42666-PK 575..723 117..266 203 35.9 Plus
CG42666-PI 742 CG42666-PI 575..723 117..266 203 35.9 Plus
CG42666-PH 742 CG42666-PH 575..723 117..266 203 35.9 Plus