Clone BS06117 Report

Search the DGRC for BS06117

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:17
Vector:pDNR-Dual
Associated Gene/Transcriptlectin-46Ca-RA
Protein status:BS06117.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06117.3prime Sequence

947 bp (891 high quality bases) assembled on 2005-12-03

> BS06117.3prime
ATGGTCTAGAAAGCTTTCAGGCCGCCGGAGCTGGTGTTGCTTCGCCCTCG
GGAGCTGCTGGTGCAGGAGTGGCGGCCTCGGCGGCTGGAGCTCCTTCCGC
TGGTGGAGCTGCCGCCGGAGTGGCTCCTTCCGCTGCCGCGGCATCCGGTG
CGGGCGTGGCTGCTCCAGTTGCGTCTGCCGCCGCGGGTGGACCCGTGCCG
CCTGGCGGCACCGTTTGCTCCTGCTCGGCAATGGGTTCCGCGGCGTTTTC
CATGCCATTCTCGAACACGGGCTCCGTGGTGCCACCACCATCACCTGGAG
TCGGCGCGCCCTCCGCTTCCTTCTCCTTCGAGACCCCGATTTCCGTTGAA
TTCGAATTGTCAGCTGGCCGTGAATCGCTCTCCACACTTTGCTCTTTGAT
CCCCGTCTCTTGCTTATCCTTCTGGCCCGCGTCGTGGTGGAAGTGATGCA
AGTGCTCGTGGCTGTGTTTCTGGCCATCCCCACTGTCCTCGGCGGGAACG
GCGCACTTCATCTGGTTCTGTTCGCAGATGAAGTACTTCTTCTCCTGGCA
GTTCACGTCCAGGACGACGGTGACATTGGGCCTGATCCTGATCTCCAGGC
AGTCGTCCAGGTTGGATCGTTGAGTCGGCTCCACAATATTGGAGTCGCCC
ATGTAGCGCACCAGTTTACCGCTGCTGATGTACTTGAAGCGCCCCTCCGA
CTGCAGATCGTTGCCACCGAACCAGAAGTCATCGAAGCCCACCTGTGACG
TCACGTAGTGTACCACCGCCTTGAAGTCCTCCATCGTGGACACGTCGGCC
AGGTTGAGGCCCTTGCGCAGGCAGTTGTTCTGGGCCCCGAACCAGTTGAT
CTTTTTGATGCCACATAGAAGCACTTTCCGTTTAGCTCCCTGAGATACGG
TTTGCCACAGGGACCCTTGTCCTTTTTCCTCTTGCTCTGCTTTCTTC

BS06117.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1656-PA 987 lectin-46Ca-RA 142..987 862..17 4230 100 Minus
CG1656-PA 987 lectin-46Ca-RA 61..142 942..861 360 97.5 Minus
CG1652-PA 969 lectin-46Cb-RA 514..549 466..431 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Ca-RA 1105 CG1656-RA 81..1008 942..16 4585 99.7 Minus
lectin-46Cb-RB 1039 CG1652-RB 267..341 727..653 180 82.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9817602..9818438 852..16 4185 100 Minus
2R 25286936 2R 9817380..9817472 942..851 385 96.8 Minus
Blast to na_te.dros performed 2015-02-10 19:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6875 177..21 193 59.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2913 183..30 153 57.8 Minus

BS06117.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:32 Download gff for BS06117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1656-PA 56..987 17..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:19 Download gff for BS06117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1656-PA 56..987 17..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:16:36 Download gff for BS06117.3prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 76..1011 13..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:41 Download gff for BS06117.3prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 76..1011 13..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:41 Download gff for BS06117.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9817375..9817472 851..947 95 -> Minus
2R 9817604..9818441 13..850 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:16:36 Download gff for BS06117.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5704880..5704977 851..947 95 -> Minus
arm_2R 5705109..5705946 13..850 99   Minus

BS06117.5prime Sequence

941 bp (765 high quality bases) assembled on 2005-12-03

> BS06117.5prime
GAAGTTATCAGTCGACATGAGGATCCTACCAATTGTGATTCTGACCTTGA
TGACGGTCCATTCCGGCTGCGGAAAGAAGCAGAGCAAGAAGGAAAAGGAC
AAGGGTCCCTGTGGCAAACCGTATCTCAGGGAGCTAAACGGAAAGTGCTT
CTATGTGGGCATCAAAAAGATCAACTGGTTCGGGGCCCAGAACAACTGCC
TGCGCAAGGGCCTCAACCTGGCCGACGTGTCCACGATGGAGGACTTCAAG
GCGGTGGTACACTACGTGACGTCACAGGTGGGCTTCGATGACTTCTGGTT
CGGTGGCAACGATCTGCAGTCGGAGGGGCGCTTCAAGTACATCAGCAGCG
GTAAACTGGTGCGCTACATGGGCGACTCCAATATTGTGGAGCCGACTCAA
CGATCCAACCTGGACGACTGCCTGGAGATCAGGATCAGGCCCAATGTCAC
CGTCGTCCTGGACGTGAACTGCCAGGAGAAGAAGTACTTCATCTGCGAAC
AGAACCAGATGAAGTGCGCCGTTCCCGCCGAGGACAGTGGGGATGGCCAG
AAACACAGCCACGAGCACTTGCATCACTTCCACCACGACGCGGGCCAGAA
GGATAAGCAAGAGACGGGGATCAAAGAGCAAAGTGTGGAGAGCGATTCAC
GGCCAGCTGACAATTCGAATTCAACGGAAATCGGGGTCTCGAAGGAGAAG
GAAGCGGAGGGCGCGCCGACTCCAGGTGATGGTGGTGGCACCACGGAGCC
CGTGTTCGAGAATGGCATGGNAAACGCCGCGGAACCCATTGCCGAGCAGG
AGCAAACGGTGGCGCCAGGCGGCACGGGTCCACCCGCGGCGGCAGACGCA
ACTGGAGCAGCCACGCCCGCACCGGATGCCGCGGCAGCGGAAGGAGCCAC
TCCGGCGGCAGCTCACCAGCGGAAGGAGCTCCAGCCGCCGA

BS06117.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1656-PA 987 lectin-46Ca-RA 1..898 17..914 4446 99.7 Plus
CG1652-PA 969 lectin-46Cb-RA 514..549 554..589 155 97.2 Plus
CG1656-PA 987 lectin-46Ca-RA 899..926 914..941 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Ca-RA 1105 CG1656-RA 20..946 16..941 4584 99.7 Plus
lectin-46Cb-RB 1039 CG1652-RB 267..341 293..367 180 82.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9817602..9818376 168..941 3799 99.6 Plus
2R 25286936 2R 9817319..9817472 16..169 770 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:00:08 has no hits.

BS06117.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:33 Download gff for BS06117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1656-PA 1..925 17..940 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:20 Download gff for BS06117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1656-PA 1..925 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:48 Download gff for BS06117.5prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 16..945 9..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:18 Download gff for BS06117.5prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 16..945 9..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:18 Download gff for BS06117.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9817315..9817472 9..169 98 -> Plus
2R 9817604..9818375 170..940 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:48 Download gff for BS06117.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5704820..5704977 9..169 98 -> Plus
arm_2R 5705109..5705880 170..940 99   Plus

BS06117.complete Sequence

1019 bp (1019 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635359

> BS06117.complete
GAAGTTATCAGTCGACATGAGGATCCTACCAATTGTGATTCTGACCTTGA
TGACGGTCCATTCCGGCTGCGGAAAGAAGCAGAGCAAGAAGGAAAAGGAC
AAGGGTCCCTGTGGCAAACCGTATCTCAGGGAGCTAAACGGAAAGTGCTT
CTATGTGGGCATCAAAAAGATCAACTGGTTCGGGGCCCAGAACAACTGCC
TGCGCAAGGGCCTCAACCTGGCCGACGTGTCCACGATGGAGGACTTCAAG
GCGGTGGTACACTACGTGACGTCACAGGTGGGCTTCGATGACTTCTGGTT
CGGTGGCAACGATCTGCAGTCGGAGGGGCGCTTCAAGTACATCAGCAGCG
GTAAACTGGTGCGCTACATGGGCGACTCCAATATTGTGGAGCCGACTCAA
CGATCCAACCTGGACGACTGCCTGGAGATCAGGATCAGGCCCAATGTCAC
CGTCGTCCTGGACGTGAACTGCCAGGAGAAGAAGTACTTCATCTGCGAAC
AGAACCAGATGAAGTGCGCCGTTCCCGCCGAGGACAGTGGGGATGGCCAG
AAACACAGCCACGAGCACTTGCATCACTTCCACCACGACGCGGGCCAGAA
GGATAAGCAAGAGACGGGGATCAAAGAGCAAAGTGTGGAGAGCGATTCAC
GGCCAGCTGACAATTCGAATTCAACGGAAATCGGGGTCTCGAAGGAGAAG
GAAGCGGAGGGCGCGCCGACTCCAGGTGATGGTGGTGGCACCACGGAGCC
CGTGTTCGAGAATGGCATGGAAAACGCCGCGGAACCCATTGCCGAGCAGG
AGCAAACGGTGCCGCCAGGCGGCACGGGTCCACCCGCGGCGGCAGACGCA
ACTGGAGCAGCCACGCCCGCACCGGATGCCGCGGCAGCGGAAGGAGCCAC
TCCGGCGGCAGCTCCACCAGCGGAAGGAGCTCCAGCCGCCGAGGCCGCCA
CTCCTGCACCAGCAGCTCCCGAGGGCGAAGCAACACCAGCTCCGGCGGCC
TGAAAGCTTTCTAGACCAT

BS06117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Ca-RA 987 CG1656-PA 1..987 17..1003 4935 100 Plus
lectin-46Cb-RB 969 CG1652-PB 262..336 293..367 180 82.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Ca-RA 1105 CG1656-RA 20..1008 16..1004 4945 100 Plus
lectin-46Cb-RB 1039 CG1652-RB 267..341 293..367 180 82.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9817602..9818438 168..1004 4185 100 Plus
2R 25286936 2R 9817319..9817472 16..169 770 100 Plus
Blast to na_te.dros performed 2014-11-28 00:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6875 843..999 193 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2913 837..990 153 57.8 Plus

BS06117.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:01 Download gff for BS06117.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 1..987 17..1003 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:53 Download gff for BS06117.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 16..1011 9..1007 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:25 Download gff for BS06117.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 21..1006 17..1002 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:01 Download gff for BS06117.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 16..1011 9..1007 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:16 Download gff for BS06117.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 21..1006 17..1002 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:16 Download gff for BS06117.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9817320..9817472 17..169 100 -> Plus
2R 9817604..9818436 170..1002 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:25 Download gff for BS06117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5704825..5704977 17..169 100 -> Plus
arm_2R 5705109..5705941 170..1002 100   Plus

BS06117.pep Sequence

Translation from 16 to 1002

> BS06117.pep
MRILPIVILTLMTVHSGCGKKQSKKEKDKGPCGKPYLRELNGKCFYVGIK
KINWFGAQNNCLRKGLNLADVSTMEDFKAVVHYVTSQVGFDDFWFGGNDL
QSEGRFKYISSGKLVRYMGDSNIVEPTQRSNLDDCLEIRIRPNVTVVLDV
NCQEKKYFICEQNQMKCAVPAEDSGDGQKHSHEHLHHFHHDAGQKDKQET
GIKEQSVESDSRPADNSNSTEIGVSKEKEAEGAPTPGDGGGTTEPVFENG
MENAAEPIAEQEQTVPPGGTGPPAAADATGAATPAPDAAAAEGATPAAAP
PAEGAPAAEAATPAPAAPEGEATPAPAA*

BS06117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Ca-PA 328 CG1656-PA 1..328 1..328 1748 100 Plus
lectin-46Cb-PB 322 CG1652-PB 26..313 31..328 613 46.9 Plus
Tm1-PF 501 CG4898-PF 348..461 213..328 167 45.5 Plus
CG9134-PC 188 CG9134-PC 54..184 37..161 149 30.3 Plus
CG9134-PA 188 CG9134-PA 54..184 37..161 149 30.3 Plus