Clone Sequence Records
BS06118.3prime Sequence
879 bp (878 high quality bases) assembled on 2005-12-03
> BS06118.3prime
ATGGTCTAGAAAGCTTCTAGAAACGCATCCGCCTTGGTCCCGTCGCACGT
TTACGCACTACTTCGTTGCCATTGGTTGCCTGTTGTCGTTTCCTCGGTGT
ACAGCTGCTGAAATTTGTGGTCTTCAAGGCTGTGGATATATCTACGGGGA
TCACTACCTCGCCAGTCTCCTCAGCCTGCTGCGGTGCTGGCTGCTCCTGC
GGTGCTGGCTGCTCTTGCTCCACCACGGGTATGAAATCGGCATCCTCTTC
TTTCTGAGTGTTCTCCTCTGTAAATAAAGTACGACGCACGCAGCGCCTCG
CTGTTGGCGGCGTTGAATCCTCCTCGGTATCCTCCTCATCATCGGTGGTT
GGATTACATCGGGCGCTGGCCCGTCGTGCAAAGGAAATGCTGCACAGTGG
CGGAATCAGAGTGGATCGTTTGAGGCTTGTCAGACCCCGATCGTAGACAG
CCAGGCAGATTTCAAAGCCGCTCACTTGACCGCCGGGCAGAAAGGTGCTC
CGATAGCCCAAAGTAAGGTGGACCGCGCATGACTCGCCCATGTCCAGGCC
GCCGTAGATATGTTCATTACGCTTGTTCAACAGGCCACACGCCTCCACAT
ACTTCAGGGAGTTCAAATTGTAGCTCGATGGACGGGGCGGTGTGATCAGG
GTTGAGGAAAACTTTTCATTTACCTCCTCGTCATCGCTCTCTGGACGCAC
ATGCAGAGTGGTGCCTGTGCGCTCCTTCTCCTCGTAGATGCGACGACGTT
CCGAGTCAAACGATCTGCCGAAGCGCGCCTTCAGCAGAAGTTCGTCGCCC
CACTCAATTTGTGCTGCTTCCTCGAATCCCTCGTGCTTGTAGCGCATTGT
CAACTGGTTTCTCAAAAATCCGGTGATTG
BS06118.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4336-PA | 1008 | rux-RA | 146..1008 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rux-RB | 1319 | CG4336-RB | 217..1080 | 879..16 | 4320 | 100 | Minus |
| rux-RA | 1420 | CG4336-RA | 318..1181 | 879..16 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6035992..6036855 | 16..879 | 4320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:39:55 has no hits.
BS06118.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:34 Download gff for
BS06118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-PA | 146..1008 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:21 Download gff for
BS06118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4336-PA | 146..1008 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:56:35 Download gff for
BS06118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 318..1181 | 16..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:10:04 Download gff for
BS06118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 318..1181 | 16..879 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:10:04 Download gff for
BS06118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6035992..6036855 | 16..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:56:35 Download gff for
BS06118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5930025..5930888 | 16..879 | 100 | | Plus |
BS06118.5prime Sequence
823 bp (732 high quality bases) assembled on 2005-12-03
> BS06118.5prime
GAAGTTATCAGTCGACATGAGCGCTCCAGAAGAACATAAGGAGACGCCTT
TGGAGGTGATCCATGAGTTCATCAATGGCGTAGATGATGGGACCATACGC
CGCGACCTGGGGGAGGACTGCATCCTCAGCTTCTACAGTCGAAATGTGCG
TGGCGCCAAGGCAATCACCGGATTTTTGAGAAACCAGTTGACAATGCGCT
ACAAGCACGAGGGATTCGAGGAAGCAGCACAAATTGAGTGGGGCGACGAA
CTTCTGCTGAAGGCGCGCTTCGGCAGATCGTTTGACTCGGAACGTCGTCG
CATCTACGAGGAGAAGGAGCGCACAGGCACCACTCTGCATGTGCGTCCAG
AGAGCGATGACGAGGAGGTAAATGAAAAGTTTTCCTCAACCCTGATCACA
CCGCCCCGTCCATCGAGCTACAATTTGAACTCCCTGAAGTATGTGGAGGC
GTGTGGCCTGTTGAACAAGCGTAATGAACATATCTACGGCGGCCTGGACA
TGGGCGAGTCATGCGCGGTCCACCTTACTTTGGGCTATCGGAGCACCTTT
CTGCCCGGCGGTCAAGTGAGCGGCTTTGAAATCTGCCTGGCTGTCTACGA
TCGGGGTCTGACAAGCCTCAAACGATCCACTCTGATTCCGCCACTGTGCA
GCATTTCCTTTGCACGACGGGCCAGCGCCCGATGTAATCCAACCACCGAT
GATGAGGAGGATACCGAGGAGGATTCAACGCCGCCAACAGCGAGGCGCTG
CGTGCGTCGTACTTTATTTACAGAGGAGAACACTCAGAAAGAAGAGGATG
CCGATTTCATACCCGTGGTGGAG
BS06118.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4336-PA | 1008 | rux-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rux-RB | 1319 | CG4336-RB | 72..878 | 17..823 | 4035 | 100 | Plus |
| rux-RA | 1420 | CG4336-RA | 173..979 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6036194..6036978 | 823..39 | 3925 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:18:53 has no hits.
BS06118.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:35 Download gff for
BS06118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:23 Download gff for
BS06118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4336-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:52 Download gff for
BS06118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 168..979 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:37 Download gff for
BS06118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 168..979 | 10..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:37 Download gff for
BS06118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6036194..6036978 | 39..823 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:52 Download gff for
BS06118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5930227..5931011 | 39..823 | 100 | <- | Minus |
BS06118.complete Sequence
1040 bp (1040 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635360
> BS06118.complete
GAAGTTATCAGTCGACATGAGCGCTCCAGAAGAACATAAGGAGACGCCTT
TGGAGGTGATCCATGAGTTCATCAATGGCGTAGATGATGGGACCATACGC
CGCGACCTGGGGGAGGACTGCATCCTCAGCTTCTACAGTCGAAATGTGCG
TGGCGCCAAGGCAATCACCGGATTTTTGAGAAACCAGTTGACAATGCGCT
ACAAGCACGAGGGATTCGAGGAAGCAGCACAAATTGAGTGGGGCGACGAA
CTTCTGCTGAAGGCGCGCTTCGGCAGATCGTTTGACTCGGAACGTCGTCG
CATCTACGAGGAGAAGGAGCGCACAGGCACCACTCTGCATGTGCGTCCAG
AGAGCGATGACGAGGAGGTAAATGAAAAGTTTTCCTCAACCCTGATCACA
CCGCCCCGTCCATCGAGCTACAATTTGAACTCCCTGAAGTATGTGGAGGC
GTGTGGCCTGTTGAACAAGCGTAATGAACATATCTACGGCGGCCTGGACA
TGGGCGAGTCATGCGCGGTCCACCTTACTTTGGGCTATCGGAGCACCTTT
CTGCCCGGCGGTCAAGTGAGCGGCTTTGAAATCTGCCTGGCTGTCTACGA
TCGGGGTCTGACAAGCCTCAAACGATCCACTCTGATTCCGCCACTGTGCA
GCATTTCCTTTGCACGACGGGCCAGCGCCCGATGTAATCCAACCACCGAT
GATGAGGAGGATACCGAGGAGGATTCAACGCCGCCAACAGCGAGGCGCTG
CGTGCGTCGTACTTTATTTACAGAGGAGAACACTCAGAAAGAAGAGGATG
CCGATTTCATACCCGTGGTGGAGCAAGAGCAGCCAGCACCGCAGGAGCAG
CCAGCACCGCAGCAGGCTGAGGAGACTGGCGAGGTAGTGATCCCCGTAGA
TATATCCACAGCCTTGAAGACCACAAATTTCAGCAGCTGTACACCGAGGA
AACGACAACAGGCAACCAATGGCAACGAAGTAGTGCGTAAACGTGCGACG
GGACCAAGGCGGATGCGTTTCTAGAAGCTTTCTAGACCAT
BS06118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rux-RB | 1008 | CG4336-PB | 1..1008 | 17..1024 | 5040 | 100 | Plus |
| rux-RA | 1008 | CG4336-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rux-RB | 1319 | CG4336-RB | 72..1080 | 17..1025 | 5045 | 100 | Plus |
| rux-RA | 1420 | CG4336-RA | 173..1181 | 17..1025 | 5045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6035992..6036978 | 1025..39 | 4935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:51 has no hits.
BS06118.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:02 Download gff for
BS06118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 1..1008 | 17..1024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:54 Download gff for
BS06118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 82..1095 | 10..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:00 Download gff for
BS06118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 173..1180 | 17..1024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:02 Download gff for
BS06118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 82..1095 | 10..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:11 Download gff for
BS06118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 173..1180 | 17..1024 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:11 Download gff for
BS06118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6035993..6036978 | 39..1024 | 100 | <- | Minus |
| X | 6037069..6037090 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:00 Download gff for
BS06118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5930026..5931011 | 39..1024 | 100 | <- | Minus |
| arm_X | 5931102..5931123 | 17..38 | 100 | | Minus |
BS06118.pep Sequence
Translation from 16 to 1023
> BS06118.pep
MSAPEEHKETPLEVIHEFINGVDDGTIRRDLGEDCILSFYSRNVRGAKAI
TGFLRNQLTMRYKHEGFEEAAQIEWGDELLLKARFGRSFDSERRRIYEEK
ERTGTTLHVRPESDDEEVNEKFSSTLITPPRPSSYNLNSLKYVEACGLLN
KRNEHIYGGLDMGESCAVHLTLGYRSTFLPGGQVSGFEICLAVYDRGLTS
LKRSTLIPPLCSISFARRASARCNPTTDDEEDTEEDSTPPTARRCVRRTL
FTEENTQKEEDADFIPVVEQEQPAPQEQPAPQQAEETGEVVIPVDISTAL
KTTNFSSCTPRKRQQATNGNEVVRKRATGPRRMRF*
BS06118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rux-PB | 335 | CG4336-PB | 1..335 | 1..335 | 1752 | 100 | Plus |
| rux-PA | 335 | CG4336-PA | 1..335 | 1..335 | 1752 | 100 | Plus |
