Clone Sequence Records
BS06121.3prime Sequence
375 bp (374 high quality bases) assembled on 2005-12-03
> BS06121.3prime
ATGGTCTAGAAAGCTTCTAATTGGGATTCAGCTTGACTTCAGCAGTGGCC
GCGTTAAGGCGCGATTTGGTTGGGAGGTTACGCTCCTTCTTCTCCACAAA
GATCTGGTAGTGACCCTCGCCGTAGCCGAAGCCGTGCATGCTCTGGTGCA
TGGCAGCTGGGATGATGGTGAAGCCGCCGCGGCGCTTCTGGAGGATCTCC
CTTTCCGGCAACTTGACCTCCTTCTCCTCTTCCTCGGCCGGATGAACGGC
GCGGTTCTCGATGATGCAGAAGAGCTGCAGGCACTTGCGCATCAAGTAGA
TCATCAGCAGGATGATCAGGTTGGTGGCAAACAGATGTTTGCGCGGCGCT
AGGAATAACATGTCGACTGATAACT
BS06121.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8960-PA | 345 | CG8960-RA | 1..345 | 361..17 | 1725 | 100 | Minus |
| CG8960-PB | 288 | CG8960-RB | 1..288 | 304..17 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8960-RB | 659 | CG8960-RB | 110..454 | 361..17 | 1725 | 100 | Minus |
| CG8960-RA | 1016 | CG8960-RA | 467..811 | 361..17 | 1725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2197540..2197884 | 361..17 | 1725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:41:31 has no hits.
BS06121.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:40 Download gff for
BS06121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-PA | 1..345 | 17..361 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:29 Download gff for
BS06121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-PA | 1..345 | 17..361 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:56:50 Download gff for
BS06121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-RA | 463..817 | 11..369 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:10:17 Download gff for
BS06121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-RA | 463..817 | 11..369 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:10:17 Download gff for
BS06121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2197536..2197890 | 11..369 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:56:50 Download gff for
BS06121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2197536..2197890 | 11..369 | 98 | | Minus |
BS06121.5prime Sequence
375 bp (374 high quality bases) assembled on 2005-12-03
> BS06121.5prime
GAAGTTATCAGTCGACATGTTATTCCTAGCGCCGCGCAAACATCTGTTTG
CCACCAACCTGATCATCCTGCTGATGATCTACTTGATGCGCAAGTGCCTG
CAGCTCTTCTGCATCATCGAGAACCGCGCCGTTCATCCGGCCGAGGAAGA
GGAGAAGGAGGTCAAGTTGCCGGAAAGGGAGATCCTCCAGAAGCGCCGCG
GCGGCTTCACCATCATCCCAGCTGCCATGCACCAGAGCATGCACGGCTTC
GGCTACGGCGAGGGTCACTACCAGATCTTTGTGGAGAAGAAGGAGCGTAA
CCTCCCAACCAAATCGCGCCTTAACGCGGCCACTGCTGAAGTCAAGCTGA
ATCCCAATTAGAAGCTTTCTAGACC
BS06121.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8960-PA | 345 | CG8960-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
| CG8960-PB | 288 | CG8960-RB | 1..288 | 74..361 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8960-RB | 659 | CG8960-RB | 110..454 | 17..361 | 1725 | 100 | Plus |
| CG8960-RA | 1016 | CG8960-RA | 467..811 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2197540..2197884 | 17..361 | 1725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:41:07 has no hits.
BS06121.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:41 Download gff for
BS06121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-PA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:31 Download gff for
BS06121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-PA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:36 Download gff for
BS06121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-RA | 463..817 | 9..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:38 Download gff for
BS06121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-RA | 463..817 | 9..367 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:38 Download gff for
BS06121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2197536..2197890 | 9..367 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:36 Download gff for
BS06121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2197536..2197890 | 9..367 | 98 | | Plus |
BS06121.complete Sequence
377 bp (377 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635361
> BS06121.complete
GAAGTTATCAGTCGACATGTTATTCCTAGCGCCGCGCAAACATCTGTTTG
CCACCAACCTGATCATCCTGCTGATGATCTACTTGATGCGCAAGTGCCTG
CAGCTCTTCTGCATCATCGAGAACCGCGCCGTTCATCCGGCCGAGGAAGA
GGAGAAGGAGGTCAAGTTGCCGGAAAGGGAGATCCTCCAGAAGCGCCGCG
GCGGCTTCACCATCATCCCAGCTGCCATGCACCAGAGCATGCACGGCTTC
GGCTACGGCGAGGGTCACTACCAGATCTTTGTGGAGAAGAAGGAGCGTAA
CCTCCCAACCAAATCGCGCCTTAACGCGGCCACTGCTGAAGTCAAGCTGA
ATCCCAATTAGAAGCTTTCTAGACCAT
BS06121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8960-RA | 345 | CG8960-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
| CG8960-RB | 288 | CG8960-PB | 1..288 | 74..361 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8960-RB | 659 | CG8960-RB | 110..454 | 17..361 | 1725 | 100 | Plus |
| CG8960-RA | 1016 | CG8960-RA | 467..811 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2197540..2197884 | 17..361 | 1725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:38:06 has no hits.
BS06121.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:32 Download gff for
BS06121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-RA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:00 Download gff for
BS06121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-RA | 463..817 | 9..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:37 Download gff for
BS06121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-RA | 472..811 | 22..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:32 Download gff for
BS06121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-RA | 463..817 | 9..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:16 Download gff for
BS06121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8960-RA | 472..811 | 22..361 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:16 Download gff for
BS06121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2197545..2197884 | 22..361 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:37 Download gff for
BS06121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2197545..2197884 | 22..361 | 100 | | Plus |
BS06121.pep Sequence
Translation from 16 to 360
> BS06121.pep
MLFLAPRKHLFATNLIILLMIYLMRKCLQLFCIIENRAVHPAEEEEKEVK
LPEREILQKRRGGFTIIPAAMHQSMHGFGYGEGHYQIFVEKKERNLPTKS
RLNAATAEVKLNPN*
BS06121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8960-PA | 114 | CG8960-PA | 1..114 | 1..114 | 591 | 100 | Plus |
| CG8960-PB | 95 | CG8960-PB | 1..95 | 20..114 | 498 | 100 | Plus |
