Clone Sequence Records
BS06123.3prime Sequence
678 bp (677 high quality bases) assembled on 2005-12-03
> BS06123.3prime
ATGGTCTAGAAAGCTTTTACATGACGTAGGCACGTCGCATCATCAGATCA
AAAAACATATCGTTGTCAATTGAGGCACTAATGGTGGCATAATAGTTGAC
AAACTCCTCGCGGGTTATCTTTCCATCCAGGTTTCCTCGACCTCCCTCAA
AGTTGTGCAAAAAGTCGGTAAGAATTTCATCCTCAGACTTTTCTCCAGAC
TGGTACTTGGGATGTTCTTTTACAGAGTACACGTTCTTAAGATCTTGAAT
GGTAATTACTCCATCTTCATCACGATCCATTTTGTTGAACGCCTGATCAA
TAATATTCAAACGACTCTGCGGCATGGGGGGCCTTAGTTTAAGCAGGAAC
TCGGTCATATTAATCGATCCACTGCCATCCTCATCAAACGTGGCGAACAT
CTGCTTGATCTCCTCCTCCGACACATCCAATCCGGTGTCCCTAATGCCAG
TGATGAACTCCTCCTCATTCAGAGCCTTGCTACCATCGTCGTCCATCGCC
CGGAAGGCCCTGCCCAATCCCAGTATGCCTGTTGCTCCGCGGCTGAGGCA
CAGCAATCGCAGCTTGGTAATGGGATCCTTGTCCTCGCCATCTGTCAGTT
CCCGGAGCGCTTGACTCGCCATGTTGGCCTCCAGGGTGTAGAGGTCACAG
TTCGGGTTCTCCATGTCGACTGATAACT
BS06123.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-PA | 648 | CG10126-RA | 1..648 | 664..17 | 3240 | 100 | Minus |
CG10126-PB | 684 | CG10126-RB | 41..684 | 660..17 | 3220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-RA | 907 | CG10126-RA | 136..785 | 666..17 | 3250 | 100 | Minus |
CG10126-RB | 835 | CG10126-RB | 70..713 | 660..17 | 3220 | 100 | Minus |
CG31345-RA | 984 | CG31345-RA | 217..347 | 584..454 | 190 | 76.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12855825..12856038 | 119..332 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 12856456..12856607 | 509..660 | 760 | 100 | Plus |
3R | 32079331 | 3R | 12856241..12856367 | 388..514 | 635 | 100 | Plus |
3R | 32079331 | 3R | 12855666..12855769 | 17..120 | 520 | 100 | Plus |
3R | 32079331 | 3R | 12856130..12856187 | 332..389 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:52:59 has no hits.
BS06123.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:42 Download gff for
BS06123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-PA | 1..648 | 17..664 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:32 Download gff for
BS06123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-PA | 1..648 | 17..664 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:47:28 Download gff for
BS06123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 136..785 | 17..666 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:59 Download gff for
BS06123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 136..785 | 17..666 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:59 Download gff for
BS06123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12855666..12855767 | 17..118 | 100 | <- | Plus |
3R | 12855825..12856037 | 119..331 | 100 | <- | Plus |
3R | 12856130..12856187 | 332..389 | 100 | <- | Plus |
3R | 12856243..12856362 | 390..509 | 100 | <- | Plus |
3R | 12856457..12856607 | 510..660 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:47:28 Download gff for
BS06123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8681388..8681489 | 17..118 | 100 | <- | Plus |
arm_3R | 8681547..8681759 | 119..331 | 100 | <- | Plus |
arm_3R | 8681852..8681909 | 332..389 | 100 | <- | Plus |
arm_3R | 8681965..8682084 | 390..509 | 100 | <- | Plus |
arm_3R | 8682179..8682329 | 510..660 | 100 | | Plus |
BS06123.5prime Sequence
678 bp (677 high quality bases) assembled on 2005-12-03
> BS06123.5prime
GAAGTTATCAGTCGACATGGAGAACCCGAACTGTGACCTCTACACCCTGG
AGGCCAACATGGCGAGTCAAGCGCTCCGGGAACTGACAGATGGCGAGGAC
AAGGATCCCATTACCAAGCTGCGATTGCTGTGCCTCAGCCGCGGAGCAAC
AGGCATACTGGGATTGGGCAGGGCCTTCCGGGCGATGGACGACGATGGTA
GCAAGGCTCTGAATGAGGAGGAGTTCATCACTGGCATTAGGGACACCGGA
TTGGATGTGTCGGAGGAGGAGATCAAGCAGATGTTCGCCACGTTTGATGA
GGATGGCAGTGGATCGATTAATATGACCGAGTTCCTGCTTAAACTAAGGC
CCCCCATGCCGCAGAGTCGTTTGAATATTATTGATCAGGCGTTCAACAAA
ATGGATCGTGATGAAGATGGAGTAATTACCATTCAAGATCTTAAGAACGT
GTACTCTGTAAAAGAACATCCCAAGTACCAGTCTGGAGAAAAGTCTGAGG
ATGAAATTCTTACCGACTTTTTGCACAACTTTGAGGGAGGTCGAGGAAAC
CTGGATGGAAAGATAACCCGCGAGGAGTTTGTCAACTATTATGCCACCAT
TAGTGCCTCAATTGACAACGATATGTTTTTTGATCTGATGATGCGACGTG
CCTACGTCATGTAAAAGCTTTCTAGACC
BS06123.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-PA | 648 | CG10126-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
CG10126-PB | 684 | CG10126-RB | 41..684 | 21..664 | 3220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-RA | 907 | CG10126-RA | 136..785 | 15..664 | 3250 | 100 | Plus |
CG10126-RB | 835 | CG10126-RB | 70..713 | 21..664 | 3220 | 100 | Plus |
CG31345-RA | 984 | CG31345-RA | 217..347 | 97..227 | 190 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12855825..12856038 | 562..349 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 12856456..12856607 | 172..21 | 760 | 100 | Minus |
3R | 32079331 | 3R | 12856241..12856367 | 293..167 | 635 | 100 | Minus |
3R | 32079331 | 3R | 12855666..12855769 | 664..561 | 520 | 100 | Minus |
3R | 32079331 | 3R | 12856130..12856187 | 349..292 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:48:22 has no hits.
BS06123.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:43 Download gff for
BS06123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:34 Download gff for
BS06123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:54:04 Download gff for
BS06123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 136..785 | 15..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:39:18 Download gff for
BS06123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 136..785 | 15..664 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:39:18 Download gff for
BS06123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12855666..12855767 | 563..664 | 100 | <- | Minus |
3R | 12855825..12856037 | 350..562 | 100 | <- | Minus |
3R | 12856130..12856187 | 292..349 | 100 | <- | Minus |
3R | 12856243..12856362 | 172..291 | 100 | <- | Minus |
3R | 12856457..12856607 | 21..171 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:54:04 Download gff for
BS06123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8681388..8681489 | 563..664 | 100 | <- | Minus |
arm_3R | 8681547..8681759 | 350..562 | 100 | <- | Minus |
arm_3R | 8681852..8681909 | 292..349 | 100 | <- | Minus |
arm_3R | 8681965..8682084 | 172..291 | 100 | <- | Minus |
arm_3R | 8682179..8682329 | 21..171 | 100 | | Minus |
BS06123.complete Sequence
680 bp (680 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635362
> BS06123.complete
GAAGTTATCAGTCGACATGGAGAACCCGAACTGTGACCTCTACACCCTGG
AGGCCAACATGGCGAGTCAAGCGCTCCGGGAACTGACAGATGGCGAGGAC
AAGGATCCCATTACCAAGCTGCGATTGCTGTGCCTCAGCCGCGGAGCAAC
AGGCATACTGGGATTGGGCAGGGCCTTCCGGGCGATGGACGACGATGGTA
GCAAGGCTCTGAATGAGGAGGAGTTCATCACTGGCATTAGGGACACCGGA
TTGGATGTGTCGGAGGAGGAGATCAAGCAGATGTTCGCCACGTTTGATGA
GGATGGCAGTGGATCGATTAATATGACCGAGTTCCTGCTTAAACTAAGGC
CCCCCATGCCGCAGAGTCGTTTGAATATTATTGATCAGGCGTTCAACAAA
ATGGATCGTGATGAAGATGGAGTAATTACCATTCAAGATCTTAAGAACGT
GTACTCTGTAAAAGAACATCCCAAGTACCAGTCTGGAGAAAAGTCTGAGG
ATGAAATTCTTACCGACTTTTTGCACAACTTTGAGGGAGGTCGAGGAAAC
CTGGATGGAAAGATAACCCGCGAGGAGTTTGTCAACTATTATGCCACCAT
TAGTGCCTCAATTGACAACGATATGTTTTTTGATCTGATGATGCGACGTG
CCTACGTCATGTAAAAGCTTTCTAGACCAT
BS06123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-RA | 648 | CG10126-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
CG10126-RB | 684 | CG10126-PB | 41..684 | 21..664 | 3220 | 100 | Plus |
CG31345-RA | 642 | CG31345-PA | 75..205 | 97..227 | 190 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-RA | 907 | CG10126-RA | 136..785 | 15..664 | 3250 | 100 | Plus |
CG10126-RB | 835 | CG10126-RB | 70..713 | 21..664 | 3220 | 100 | Plus |
CG31345-RA | 984 | CG31345-RA | 217..347 | 97..227 | 190 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12855825..12856038 | 562..349 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 12856456..12856607 | 172..21 | 760 | 100 | Minus |
3R | 32079331 | 3R | 12856241..12856367 | 293..167 | 635 | 100 | Minus |
3R | 32079331 | 3R | 12855666..12855769 | 664..561 | 520 | 100 | Minus |
3R | 32079331 | 3R | 12856130..12856187 | 349..292 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:27 has no hits.
BS06123.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:06 Download gff for
BS06123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:57 Download gff for
BS06123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 107..756 | 15..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:34 Download gff for
BS06123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 138..783 | 17..662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:07 Download gff for
BS06123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 107..756 | 15..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:47 Download gff for
BS06123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 138..783 | 17..662 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:47 Download gff for
BS06123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12855668..12855767 | 563..662 | 100 | <- | Minus |
3R | 12855825..12856037 | 350..562 | 100 | <- | Minus |
3R | 12856130..12856187 | 292..349 | 100 | <- | Minus |
3R | 12856243..12856362 | 172..291 | 100 | <- | Minus |
3R | 12856457..12856608 | 17..171 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:34 Download gff for
BS06123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8681390..8681489 | 563..662 | 100 | <- | Minus |
arm_3R | 8681547..8681759 | 350..562 | 100 | <- | Minus |
arm_3R | 8681852..8681909 | 292..349 | 100 | <- | Minus |
arm_3R | 8681965..8682084 | 172..291 | 100 | <- | Minus |
arm_3R | 8682179..8682330 | 17..171 | 98 | | Minus |
BS06123.pep Sequence
Translation from 16 to 663
> BS06123.pep
MENPNCDLYTLEANMASQALRELTDGEDKDPITKLRLLCLSRGATGILGL
GRAFRAMDDDGSKALNEEEFITGIRDTGLDVSEEEIKQMFATFDEDGSGS
INMTEFLLKLRPPMPQSRLNIIDQAFNKMDRDEDGVITIQDLKNVYSVKE
HPKYQSGEKSEDEILTDFLHNFEGGRGNLDGKITREEFVNYYATISASID
NDMFFDLMMRRAYVM*
BS06123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-PA | 215 | CG10126-PA | 1..215 | 1..215 | 1109 | 100 | Plus |
CG10126-PB | 227 | CG10126-PB | 13..227 | 1..215 | 1102 | 99.1 | Plus |
CG31345-PA | 213 | CG31345-PA | 7..211 | 9..213 | 713 | 66.3 | Plus |
CG11165-PA | 148 | CG11165-PA | 16..143 | 54..190 | 147 | 30.5 | Plus |
Cam-PD | 149 | CG8472-PD | 16..143 | 53..189 | 141 | 30 | Plus |