Clone BS06123 Report

Search the DGRC for BS06123

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG10126-RA
Protein status:BS06123.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06123.3prime Sequence

678 bp (677 high quality bases) assembled on 2005-12-03

> BS06123.3prime
ATGGTCTAGAAAGCTTTTACATGACGTAGGCACGTCGCATCATCAGATCA
AAAAACATATCGTTGTCAATTGAGGCACTAATGGTGGCATAATAGTTGAC
AAACTCCTCGCGGGTTATCTTTCCATCCAGGTTTCCTCGACCTCCCTCAA
AGTTGTGCAAAAAGTCGGTAAGAATTTCATCCTCAGACTTTTCTCCAGAC
TGGTACTTGGGATGTTCTTTTACAGAGTACACGTTCTTAAGATCTTGAAT
GGTAATTACTCCATCTTCATCACGATCCATTTTGTTGAACGCCTGATCAA
TAATATTCAAACGACTCTGCGGCATGGGGGGCCTTAGTTTAAGCAGGAAC
TCGGTCATATTAATCGATCCACTGCCATCCTCATCAAACGTGGCGAACAT
CTGCTTGATCTCCTCCTCCGACACATCCAATCCGGTGTCCCTAATGCCAG
TGATGAACTCCTCCTCATTCAGAGCCTTGCTACCATCGTCGTCCATCGCC
CGGAAGGCCCTGCCCAATCCCAGTATGCCTGTTGCTCCGCGGCTGAGGCA
CAGCAATCGCAGCTTGGTAATGGGATCCTTGTCCTCGCCATCTGTCAGTT
CCCGGAGCGCTTGACTCGCCATGTTGGCCTCCAGGGTGTAGAGGTCACAG
TTCGGGTTCTCCATGTCGACTGATAACT

BS06123.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-PA 648 CG10126-RA 1..648 664..17 3240 100 Minus
CG10126-PB 684 CG10126-RB 41..684 660..17 3220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-RA 907 CG10126-RA 136..785 666..17 3250 100 Minus
CG10126-RB 835 CG10126-RB 70..713 660..17 3220 100 Minus
CG31345-RA 984 CG31345-RA 217..347 584..454 190 76.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12855825..12856038 119..332 1070 100 Plus
3R 32079331 3R 12856456..12856607 509..660 760 100 Plus
3R 32079331 3R 12856241..12856367 388..514 635 100 Plus
3R 32079331 3R 12855666..12855769 17..120 520 100 Plus
3R 32079331 3R 12856130..12856187 332..389 290 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:52:59 has no hits.

BS06123.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:42 Download gff for BS06123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-PA 1..648 17..664 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:32 Download gff for BS06123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-PA 1..648 17..664 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:47:28 Download gff for BS06123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 136..785 17..666 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:59 Download gff for BS06123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 136..785 17..666 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:59 Download gff for BS06123.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12855666..12855767 17..118 100 <- Plus
3R 12855825..12856037 119..331 100 <- Plus
3R 12856130..12856187 332..389 100 <- Plus
3R 12856243..12856362 390..509 100 <- Plus
3R 12856457..12856607 510..660 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:47:28 Download gff for BS06123.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8681388..8681489 17..118 100 <- Plus
arm_3R 8681547..8681759 119..331 100 <- Plus
arm_3R 8681852..8681909 332..389 100 <- Plus
arm_3R 8681965..8682084 390..509 100 <- Plus
arm_3R 8682179..8682329 510..660 100   Plus

BS06123.5prime Sequence

678 bp (677 high quality bases) assembled on 2005-12-03

> BS06123.5prime
GAAGTTATCAGTCGACATGGAGAACCCGAACTGTGACCTCTACACCCTGG
AGGCCAACATGGCGAGTCAAGCGCTCCGGGAACTGACAGATGGCGAGGAC
AAGGATCCCATTACCAAGCTGCGATTGCTGTGCCTCAGCCGCGGAGCAAC
AGGCATACTGGGATTGGGCAGGGCCTTCCGGGCGATGGACGACGATGGTA
GCAAGGCTCTGAATGAGGAGGAGTTCATCACTGGCATTAGGGACACCGGA
TTGGATGTGTCGGAGGAGGAGATCAAGCAGATGTTCGCCACGTTTGATGA
GGATGGCAGTGGATCGATTAATATGACCGAGTTCCTGCTTAAACTAAGGC
CCCCCATGCCGCAGAGTCGTTTGAATATTATTGATCAGGCGTTCAACAAA
ATGGATCGTGATGAAGATGGAGTAATTACCATTCAAGATCTTAAGAACGT
GTACTCTGTAAAAGAACATCCCAAGTACCAGTCTGGAGAAAAGTCTGAGG
ATGAAATTCTTACCGACTTTTTGCACAACTTTGAGGGAGGTCGAGGAAAC
CTGGATGGAAAGATAACCCGCGAGGAGTTTGTCAACTATTATGCCACCAT
TAGTGCCTCAATTGACAACGATATGTTTTTTGATCTGATGATGCGACGTG
CCTACGTCATGTAAAAGCTTTCTAGACC

BS06123.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-PA 648 CG10126-RA 1..648 17..664 3240 100 Plus
CG10126-PB 684 CG10126-RB 41..684 21..664 3220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-RA 907 CG10126-RA 136..785 15..664 3250 100 Plus
CG10126-RB 835 CG10126-RB 70..713 21..664 3220 100 Plus
CG31345-RA 984 CG31345-RA 217..347 97..227 190 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12855825..12856038 562..349 1070 100 Minus
3R 32079331 3R 12856456..12856607 172..21 760 100 Minus
3R 32079331 3R 12856241..12856367 293..167 635 100 Minus
3R 32079331 3R 12855666..12855769 664..561 520 100 Minus
3R 32079331 3R 12856130..12856187 349..292 290 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:48:22 has no hits.

BS06123.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:43 Download gff for BS06123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-PA 1..648 17..664 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:34 Download gff for BS06123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-PA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:54:04 Download gff for BS06123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 136..785 15..664 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:39:18 Download gff for BS06123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 136..785 15..664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:39:18 Download gff for BS06123.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12855666..12855767 563..664 100 <- Minus
3R 12855825..12856037 350..562 100 <- Minus
3R 12856130..12856187 292..349 100 <- Minus
3R 12856243..12856362 172..291 100 <- Minus
3R 12856457..12856607 21..171 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:54:04 Download gff for BS06123.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8681388..8681489 563..664 100 <- Minus
arm_3R 8681547..8681759 350..562 100 <- Minus
arm_3R 8681852..8681909 292..349 100 <- Minus
arm_3R 8681965..8682084 172..291 100 <- Minus
arm_3R 8682179..8682329 21..171 100   Minus

BS06123.complete Sequence

680 bp (680 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635362

> BS06123.complete
GAAGTTATCAGTCGACATGGAGAACCCGAACTGTGACCTCTACACCCTGG
AGGCCAACATGGCGAGTCAAGCGCTCCGGGAACTGACAGATGGCGAGGAC
AAGGATCCCATTACCAAGCTGCGATTGCTGTGCCTCAGCCGCGGAGCAAC
AGGCATACTGGGATTGGGCAGGGCCTTCCGGGCGATGGACGACGATGGTA
GCAAGGCTCTGAATGAGGAGGAGTTCATCACTGGCATTAGGGACACCGGA
TTGGATGTGTCGGAGGAGGAGATCAAGCAGATGTTCGCCACGTTTGATGA
GGATGGCAGTGGATCGATTAATATGACCGAGTTCCTGCTTAAACTAAGGC
CCCCCATGCCGCAGAGTCGTTTGAATATTATTGATCAGGCGTTCAACAAA
ATGGATCGTGATGAAGATGGAGTAATTACCATTCAAGATCTTAAGAACGT
GTACTCTGTAAAAGAACATCCCAAGTACCAGTCTGGAGAAAAGTCTGAGG
ATGAAATTCTTACCGACTTTTTGCACAACTTTGAGGGAGGTCGAGGAAAC
CTGGATGGAAAGATAACCCGCGAGGAGTTTGTCAACTATTATGCCACCAT
TAGTGCCTCAATTGACAACGATATGTTTTTTGATCTGATGATGCGACGTG
CCTACGTCATGTAAAAGCTTTCTAGACCAT

BS06123.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-RA 648 CG10126-PA 1..648 17..664 3240 100 Plus
CG10126-RB 684 CG10126-PB 41..684 21..664 3220 100 Plus
CG31345-RA 642 CG31345-PA 75..205 97..227 190 76.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-RA 907 CG10126-RA 136..785 15..664 3250 100 Plus
CG10126-RB 835 CG10126-RB 70..713 21..664 3220 100 Plus
CG31345-RA 984 CG31345-RA 217..347 97..227 190 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12855825..12856038 562..349 1070 100 Minus
3R 32079331 3R 12856456..12856607 172..21 760 100 Minus
3R 32079331 3R 12856241..12856367 293..167 635 100 Minus
3R 32079331 3R 12855666..12855769 664..561 520 100 Minus
3R 32079331 3R 12856130..12856187 349..292 290 100 Minus
Blast to na_te.dros performed on 2014-11-27 21:00:27 has no hits.

BS06123.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:06 Download gff for BS06123.complete
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:57 Download gff for BS06123.complete
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 107..756 15..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:34 Download gff for BS06123.complete
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 138..783 17..662 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:07 Download gff for BS06123.complete
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 107..756 15..664 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:47 Download gff for BS06123.complete
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 138..783 17..662 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:47 Download gff for BS06123.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12855668..12855767 563..662 100 <- Minus
3R 12855825..12856037 350..562 100 <- Minus
3R 12856130..12856187 292..349 100 <- Minus
3R 12856243..12856362 172..291 100 <- Minus
3R 12856457..12856608 17..171 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:34 Download gff for BS06123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8681390..8681489 563..662 100 <- Minus
arm_3R 8681547..8681759 350..562 100 <- Minus
arm_3R 8681852..8681909 292..349 100 <- Minus
arm_3R 8681965..8682084 172..291 100 <- Minus
arm_3R 8682179..8682330 17..171 98   Minus

BS06123.pep Sequence

Translation from 16 to 663

> BS06123.pep
MENPNCDLYTLEANMASQALRELTDGEDKDPITKLRLLCLSRGATGILGL
GRAFRAMDDDGSKALNEEEFITGIRDTGLDVSEEEIKQMFATFDEDGSGS
INMTEFLLKLRPPMPQSRLNIIDQAFNKMDRDEDGVITIQDLKNVYSVKE
HPKYQSGEKSEDEILTDFLHNFEGGRGNLDGKITREEFVNYYATISASID
NDMFFDLMMRRAYVM*

BS06123.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-PA 215 CG10126-PA 1..215 1..215 1109 100 Plus
CG10126-PB 227 CG10126-PB 13..227 1..215 1102 99.1 Plus
CG31345-PA 213 CG31345-PA 7..211 9..213 713 66.3 Plus
CG11165-PA 148 CG11165-PA 16..143 54..190 147 30.5 Plus
Cam-PD 149 CG8472-PD 16..143 53..189 141 30 Plus