Clone Sequence Records
BS06126.5prime Sequence
336 bp (335 high quality bases) assembled on 2005-12-03
> BS06126.5prime
GAAGTTATCAGTCGACATGTCGCTTACCCCCTTTCTACGCCTGCCCTTAA
CCGATCTGACCGGGTGCCTAATTAACCACCAGACCTACGACAAGTGCGGA
AAATTCGAGATGAAAATGATGGAGTGCTTCGAGGCCTATGGCCTGGAGCG
TGGAAAACGGGAGTGCGCCGACCTGATCTCCGACTTTCAGGAGTGCGTCG
GCATGCAGAAGCAACTGATGCGCTTCCATGCAATGCGAAACGAACGCTAC
AAGCAGTGGCTCAAGGGGGAGCGTAAGGGACAAGAATTTTTTGCGGATCC
CCCACGCGTTGATGCCTACTAGAAGCTTTCTAGACC
BS06126.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11455-PA | 306 | CG11455-RA | 1..306 | 17..322 | 1530 | 100 | Plus |
CG11455-PB | 306 | CG11455-RB | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11455-RK | 798 | CG11455-RK | 413..719 | 17..323 | 1535 | 100 | Plus |
CG11455-RJ | 869 | CG11455-RJ | 484..790 | 17..323 | 1535 | 100 | Plus |
CG11455-RG | 678 | CG11455-RG | 293..599 | 17..323 | 1535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 155572..155785 | 17..230 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 155851..155951 | 223..323 | 475 | 98 | Plus |
Blast to na_te.dros performed 2015-02-12 00:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1161..1212 | 93..144 | 107 | 67.3 | Plus |
BS06126.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:47 Download gff for
BS06126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-PA | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:40 Download gff for
BS06126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-PB | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:32 Download gff for
BS06126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-RG | 285..599 | 9..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:42:13 Download gff for
BS06126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-RG | 285..599 | 9..323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:42:13 Download gff for
BS06126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 155564..155784 | 9..229 | 98 | -> | Plus |
2L | 155858..155951 | 230..323 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:32 Download gff for
BS06126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 155564..155784 | 9..229 | 98 | -> | Plus |
arm_2L | 155858..155951 | 230..323 | 100 | | Plus |
BS06126.3prime Sequence
336 bp (335 high quality bases) assembled on 2005-12-03
> BS06126.3prime
ATGGTCTAGAAAGCTTCTAGTAGGCATCAACGCGTGGGGGATCCGCAAAA
AATTCTTGTCCCTTACGCTCCCCCTTGAGCCACTGCTTGTAGCGTTCGTT
TCGCATTGCATGGAAGCGCATCAGTTGCTTCTGCATGCCGACGCACTCCT
GAAAGTCGGAGATCAGGTCGGCGCACTCCCGTTTTCCACGCTCCAGGCCA
TAGGCCTCGAAGCACTCCATCATTTTCATCTCGAATTTTCCGCACTTGTC
GTAGGTCTGGTGGTTAATTAGGCACCCGGTCAGATCGGTTAAGGGCAGGC
GTAGAAAGGGGGTAAGCGACATGTCGACTGATAACT
BS06126.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11455-PA | 306 | CG11455-RA | 1..306 | 322..17 | 1530 | 100 | Minus |
CG11455-PB | 306 | CG11455-RB | 1..306 | 322..17 | 1530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11455-RK | 798 | CG11455-RK | 413..719 | 322..16 | 1535 | 100 | Minus |
CG11455-RJ | 869 | CG11455-RJ | 484..790 | 322..16 | 1535 | 100 | Minus |
CG11455-RG | 678 | CG11455-RG | 293..599 | 322..16 | 1535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 155572..155785 | 322..109 | 1070 | 100 | Minus |
2L | 23513712 | 2L | 155851..155951 | 116..16 | 475 | 98 | Minus |
Blast to na_te.dros performed 2015-01-31 17:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1161..1212 | 246..195 | 107 | 67.3 | Minus |
BS06126.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:46 Download gff for
BS06126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-PA | 1..306 | 17..322 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:38 Download gff for
BS06126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-PB | 1..306 | 17..322 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:38 Download gff for
BS06126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-RG | 285..599 | 16..330 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:26 Download gff for
BS06126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-RG | 285..599 | 16..330 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:26 Download gff for
BS06126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 155564..155784 | 110..330 | 98 | -> | Minus |
2L | 155858..155951 | 16..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:38 Download gff for
BS06126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 155564..155784 | 110..330 | 98 | -> | Minus |
arm_2L | 155858..155951 | 16..109 | 100 | | Minus |
BS06126.complete Sequence
338 bp (338 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635363
> BS06126.complete
GAAGTTATCAGTCGACATGTCGCTTACCCCCTTTCTACGCCTGCCCTTAA
CCGATCTGACCGGGTGCCTAATTAACCACCAGACCTACGACAAGTGCGGA
AAATTCGAGATGAAAATGATGGAGTGCTTCGAGGCCTATGGCCTGGAGCG
TGGAAAACGGGAGTGCGCCGACCTGATCTCCGACTTTCAGGAGTGCGTCG
GCATGCAGAAGCAACTGATGCGCTTCCATGCAATGCGAAACGAACGCTAC
AAGCAGTGGCTCAAGGGGGAGCGTAAGGGACAAGAATTTTTTGCGGATCC
CCCACGCGTTGATGCCTACTAGAAGCTTTCTAGACCAT
BS06126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11455-RK | 306 | CG11455-PK | 1..306 | 17..322 | 1530 | 100 | Plus |
CG11455-RJ | 306 | CG11455-PJ | 1..306 | 17..322 | 1530 | 100 | Plus |
CG11455-RG | 306 | CG11455-PG | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11455-RK | 798 | CG11455-RK | 413..719 | 17..323 | 1535 | 100 | Plus |
CG11455-RJ | 869 | CG11455-RJ | 484..790 | 17..323 | 1535 | 100 | Plus |
CG11455-RG | 678 | CG11455-RG | 293..599 | 17..323 | 1535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 155572..155785 | 17..230 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 155851..155951 | 223..323 | 475 | 98 | Plus |
Blast to na_te.dros performed 2014-11-27 13:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1161..1212 | 93..144 | 107 | 67.3 | Plus |
BS06126.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:26 Download gff for
BS06126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-RB | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:18 Download gff for
BS06126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-RB | 228..542 | 9..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:50 Download gff for
BS06126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-RG | 293..598 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:26 Download gff for
BS06126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-RB | 228..542 | 9..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:20 Download gff for
BS06126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11455-RG | 293..598 | 17..322 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:20 Download gff for
BS06126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 155572..155784 | 17..229 | 100 | -> | Plus |
2L | 155858..155950 | 230..322 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:50 Download gff for
BS06126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 155572..155784 | 17..229 | 100 | -> | Plus |
arm_2L | 155858..155950 | 230..322 | 100 | | Plus |
BS06126.pep Sequence
Translation from 16 to 321
> BS06126.pep
MSLTPFLRLPLTDLTGCLINHQTYDKCGKFEMKMMECFEAYGLERGKREC
ADLISDFQECVGMQKQLMRFHAMRNERYKQWLKGERKGQEFFADPPRVDA
Y*
BS06126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11455-PK | 101 | CG11455-PK | 1..101 | 1..101 | 554 | 100 | Plus |
CG11455-PJ | 101 | CG11455-PJ | 1..101 | 1..101 | 554 | 100 | Plus |
CG11455-PG | 101 | CG11455-PG | 1..101 | 1..101 | 554 | 100 | Plus |
CG11455-PF | 101 | CG11455-PF | 1..101 | 1..101 | 554 | 100 | Plus |
CG11455-PD | 101 | CG11455-PD | 1..101 | 1..101 | 554 | 100 | Plus |