Clone BS06126 Report

Search the DGRC for BS06126

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG11455-RD
Protein status:BS06126.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06126.5prime Sequence

336 bp (335 high quality bases) assembled on 2005-12-03

> BS06126.5prime
GAAGTTATCAGTCGACATGTCGCTTACCCCCTTTCTACGCCTGCCCTTAA
CCGATCTGACCGGGTGCCTAATTAACCACCAGACCTACGACAAGTGCGGA
AAATTCGAGATGAAAATGATGGAGTGCTTCGAGGCCTATGGCCTGGAGCG
TGGAAAACGGGAGTGCGCCGACCTGATCTCCGACTTTCAGGAGTGCGTCG
GCATGCAGAAGCAACTGATGCGCTTCCATGCAATGCGAAACGAACGCTAC
AAGCAGTGGCTCAAGGGGGAGCGTAAGGGACAAGAATTTTTTGCGGATCC
CCCACGCGTTGATGCCTACTAGAAGCTTTCTAGACC

BS06126.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11455-PA 306 CG11455-RA 1..306 17..322 1530 100 Plus
CG11455-PB 306 CG11455-RB 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11455-RK 798 CG11455-RK 413..719 17..323 1535 100 Plus
CG11455-RJ 869 CG11455-RJ 484..790 17..323 1535 100 Plus
CG11455-RG 678 CG11455-RG 293..599 17..323 1535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 155572..155785 17..230 1070 100 Plus
2L 23513712 2L 155851..155951 223..323 475 98 Plus
Blast to na_te.dros performed 2015-02-12 00:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1161..1212 93..144 107 67.3 Plus

BS06126.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:47 Download gff for BS06126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11455-PA 1..306 17..322 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:40 Download gff for BS06126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11455-PB 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:32 Download gff for BS06126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11455-RG 285..599 9..323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:42:13 Download gff for BS06126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11455-RG 285..599 9..323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:42:13 Download gff for BS06126.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 155564..155784 9..229 98 -> Plus
2L 155858..155951 230..323 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:32 Download gff for BS06126.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 155564..155784 9..229 98 -> Plus
arm_2L 155858..155951 230..323 100   Plus

BS06126.3prime Sequence

336 bp (335 high quality bases) assembled on 2005-12-03

> BS06126.3prime
ATGGTCTAGAAAGCTTCTAGTAGGCATCAACGCGTGGGGGATCCGCAAAA
AATTCTTGTCCCTTACGCTCCCCCTTGAGCCACTGCTTGTAGCGTTCGTT
TCGCATTGCATGGAAGCGCATCAGTTGCTTCTGCATGCCGACGCACTCCT
GAAAGTCGGAGATCAGGTCGGCGCACTCCCGTTTTCCACGCTCCAGGCCA
TAGGCCTCGAAGCACTCCATCATTTTCATCTCGAATTTTCCGCACTTGTC
GTAGGTCTGGTGGTTAATTAGGCACCCGGTCAGATCGGTTAAGGGCAGGC
GTAGAAAGGGGGTAAGCGACATGTCGACTGATAACT

BS06126.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11455-PA 306 CG11455-RA 1..306 322..17 1530 100 Minus
CG11455-PB 306 CG11455-RB 1..306 322..17 1530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11455-RK 798 CG11455-RK 413..719 322..16 1535 100 Minus
CG11455-RJ 869 CG11455-RJ 484..790 322..16 1535 100 Minus
CG11455-RG 678 CG11455-RG 293..599 322..16 1535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 155572..155785 322..109 1070 100 Minus
2L 23513712 2L 155851..155951 116..16 475 98 Minus
Blast to na_te.dros performed 2015-01-31 17:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1161..1212 246..195 107 67.3 Minus

BS06126.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:46 Download gff for BS06126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11455-PA 1..306 17..322 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:38 Download gff for BS06126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11455-PB 1..306 17..322 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:38 Download gff for BS06126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11455-RG 285..599 16..330 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:26 Download gff for BS06126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11455-RG 285..599 16..330 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:26 Download gff for BS06126.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 155564..155784 110..330 98 -> Minus
2L 155858..155951 16..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:38 Download gff for BS06126.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 155564..155784 110..330 98 -> Minus
arm_2L 155858..155951 16..109 100   Minus

BS06126.complete Sequence

338 bp (338 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635363

> BS06126.complete
GAAGTTATCAGTCGACATGTCGCTTACCCCCTTTCTACGCCTGCCCTTAA
CCGATCTGACCGGGTGCCTAATTAACCACCAGACCTACGACAAGTGCGGA
AAATTCGAGATGAAAATGATGGAGTGCTTCGAGGCCTATGGCCTGGAGCG
TGGAAAACGGGAGTGCGCCGACCTGATCTCCGACTTTCAGGAGTGCGTCG
GCATGCAGAAGCAACTGATGCGCTTCCATGCAATGCGAAACGAACGCTAC
AAGCAGTGGCTCAAGGGGGAGCGTAAGGGACAAGAATTTTTTGCGGATCC
CCCACGCGTTGATGCCTACTAGAAGCTTTCTAGACCAT

BS06126.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11455-RK 306 CG11455-PK 1..306 17..322 1530 100 Plus
CG11455-RJ 306 CG11455-PJ 1..306 17..322 1530 100 Plus
CG11455-RG 306 CG11455-PG 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11455-RK 798 CG11455-RK 413..719 17..323 1535 100 Plus
CG11455-RJ 869 CG11455-RJ 484..790 17..323 1535 100 Plus
CG11455-RG 678 CG11455-RG 293..599 17..323 1535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 155572..155785 17..230 1070 100 Plus
2L 23513712 2L 155851..155951 223..323 475 98 Plus
Blast to na_te.dros performed 2014-11-27 13:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1161..1212 93..144 107 67.3 Plus

BS06126.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:26 Download gff for BS06126.complete
Subject Subject Range Query Range Percent Splice Strand
CG11455-RB 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:18 Download gff for BS06126.complete
Subject Subject Range Query Range Percent Splice Strand
CG11455-RB 228..542 9..323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:50 Download gff for BS06126.complete
Subject Subject Range Query Range Percent Splice Strand
CG11455-RG 293..598 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:26 Download gff for BS06126.complete
Subject Subject Range Query Range Percent Splice Strand
CG11455-RB 228..542 9..323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:20 Download gff for BS06126.complete
Subject Subject Range Query Range Percent Splice Strand
CG11455-RG 293..598 17..322 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:20 Download gff for BS06126.complete
Subject Subject Range Query Range Percent Splice Strand
2L 155572..155784 17..229 100 -> Plus
2L 155858..155950 230..322 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:50 Download gff for BS06126.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 155572..155784 17..229 100 -> Plus
arm_2L 155858..155950 230..322 100   Plus

BS06126.pep Sequence

Translation from 16 to 321

> BS06126.pep
MSLTPFLRLPLTDLTGCLINHQTYDKCGKFEMKMMECFEAYGLERGKREC
ADLISDFQECVGMQKQLMRFHAMRNERYKQWLKGERKGQEFFADPPRVDA
Y*

BS06126.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11455-PK 101 CG11455-PK 1..101 1..101 554 100 Plus
CG11455-PJ 101 CG11455-PJ 1..101 1..101 554 100 Plus
CG11455-PG 101 CG11455-PG 1..101 1..101 554 100 Plus
CG11455-PF 101 CG11455-PF 1..101 1..101 554 100 Plus
CG11455-PD 101 CG11455-PD 1..101 1..101 554 100 Plus