Clone Sequence Records
BS06129.3prime Sequence
957 bp (847 high quality bases) assembled on 2005-12-03
> BS06129.3prime
ATGGTCTAGAAAGCTTTCACGACTTGTTTTTAGCTTGCAGTGCAGCGTAG
ATCAACCACTCGCGGCCGCCAGGTTTCTGACATCGCTCCAAAAGCTTCTC
CAGCTGGTGTGCCTGCTCCGCTAGCTGTTCCTCCTCCAGAATACCGGAAA
TCTCATGCAACAGCGCATGGCGTATTAACTGGGGCTCATCCTCGACAATG
TAACGCTTAACGCAAGCAACCAGTTCTTCGAGATGCTCGTCTACAGCTCC
CGGAAAGAGCTGATCCATGGCGGCGGCCAGGTTGAATAGGTATTCGCGAT
TGGGGCCACTGGGACCGGCCGAGCTGAAGATTTGCCTCGCAATACAGGGA
ACTTGCCACACATCACCAGCATAGGAATCGTTCGCCTGCGTGGCCACGTA
CATGATCACTTGGATGGGTTCTGCACCGTCAGTCGGATACTCGTGGAACT
CCAAGCTGCAGCGCTCATACCCGTTCTTCTCCCGGTAATCCAGATGGTCC
AACACAGCACCCTTTTGACTAGCAGCTATGCGATAGGCGACGCCATAGAC
ACGATCCTGGGCGGGATCGCCTGGCAGCAGGGTGACCACGCGACCAGGAC
GTTCGGGAATACCCCGGTGATCGATGCTGTGCTGGTAGAAGCGACGCTTG
AATCCCCAAACGAAGCCGCGTCGTCGGTCTATGTACGGGAAGTCCGTCTT
CCATACCAACGACCCATAGCCAAAGATCCAGACATCCGCATCCGTGGCCG
CCGGCGGCTCCAATTGATTGCTATTTTCGGTATCGAAAGTGCGTAGCATG
GAGAATCCTTGTGTAAAATCCTGATCCGCTGACTTGCATCCATGTTCCCT
GGGCTCCTCGATAACGTTCGCGAAGAAACTCGTGTATATGTTGCCGGGCA
GCTGATCCGCCCTAGAACACTGCTTCGCAGCTCCGTCAGGAAGTCCACAT
GTCGACT
BS06129.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2540-PA | 936 | CG2540-RA | 76..936 | 877..17 | 4305 | 100 | Minus |
| CG2540-PA | 936 | CG2540-RA | 35..71 | 918..882 | 185 | 100 | Minus |
| CG2540-PA | 936 | CG2540-RA | 5..34 | 947..918 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2540-RA | 1234 | CG2540-RA | 86..1017 | 947..17 | 4590 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12629963..12630894 | 947..17 | 4550 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:16:21 has no hits.
BS06129.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:52 Download gff for
BS06129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-PA | 1..936 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:48 Download gff for
BS06129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-PA | 1..936 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:16:34 Download gff for
BS06129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-RA | 79..1017 | 17..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:39 Download gff for
BS06129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-RA | 79..1017 | 17..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:39 Download gff for
BS06129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12629956..12630894 | 17..956 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:16:34 Download gff for
BS06129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12523989..12524927 | 17..956 | 99 | | Minus |
BS06129.5prime Sequence
852 bp (746 high quality bases) assembled on 2005-12-03
> BS06129.5prime
GAAGTTATCAGTCGACATGTTGGACTTCCTGACGGAGCTGCGAAGCAGTG
GTTCTAGGGCGGATCAGCTGCCCGGCAACATATACACCGAGTTCTTCGCG
AACGTTATCGAGGAGCCCAGGGAACATGGATGCAAGTCAGCGGATCAGGA
TTTTACACAAGGATTCTCCATGCTACGCACTTTCGATACCGAAAATAGCA
ATCAATTGGAGCCGCCGGCGGCCACGGATGCGGATGTCTGGATCTTTGGC
TATGGGTCGTTGGTATGGAAGACGGACTTCCCGTACATAGACCGACGACG
CGGCTTCGTTTGGGGATTCAAGCGTCGCTTCTACCAGCACAGCATCGATC
ACCGGGGTATTCCCGAACGTCCTGGTCGCGTGGTCACCCTGCTGCCAGGC
GATCCCGCCCAGGATCGTGTCTATGGCGTCGCCTATCGCATAGCTGCTAG
TCAAAAGGGTGCTGTGTTGGACCATCTGGATTACCGGGAGAAGAACGGGT
ATGAGCGCTGCAGCTTGGAGTTCCACGAGTATCCGACTGACGGTGCAGAA
CCCATCCAAGTGATCATGTACGTGGCCACGCAGGCGAACGATTCCTATGC
TGGTGATGTGTGGCAAGTTCCCTGTATTGCGAGGCAAATCTTCAGCTCGG
CCGGTCCCAGTGGCCCCAATCGCGAATACCTATTCAACCTGGCCGCCGCC
ATGGATCAGCTCTTTCCGGGAGCTGTAGACGAGCATCTCGAAGAACTGGT
TGCTTGCGTTAAGCGTTACATTGTCGAGGATGAGCCCCAGTTAATACGCC
ATGCGCTGTTGCATGAGATTTCCGGTATTCTGGAGGAGGAACAGCTAGCG
GA
BS06129.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2540-PA | 936 | CG2540-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2540-RA | 1234 | CG2540-RA | 82..917 | 17..852 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12629959..12630794 | 17..852 | 4180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:00:00 has no hits.
BS06129.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:53 Download gff for
BS06129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:49 Download gff for
BS06129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:47 Download gff for
BS06129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-RA | 79..916 | 11..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:46:45 Download gff for
BS06129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-RA | 79..916 | 11..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:46:45 Download gff for
BS06129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12629956..12630793 | 11..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:47 Download gff for
BS06129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12523989..12524826 | 11..851 | 99 | | Plus |
BS06129.complete Sequence
968 bp (968 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635364
> BS06129.complete
GAAGTTATCAGTCGACATGTTGGACTTCCTGACGGAGCTGCGAAGCAGTG
GTTCTAGGGCGGATCAGCTGCCCGGCAACATATACACCGAGTTCTTCGCG
AACGTTATCGAGGAGCCCAGGGAACATGGATGCAAGTCAGCGGATCAGGA
TTTTACACAAGGATTCTCCATGCTACGCACTTTCGATACCGAAAATAGCA
ATCAATTGGAGCCGCCGGCGGCCACGGATGCGGATGTCTGGATCTTTGGC
TATGGGTCGTTGGTATGGAAGACGGACTTCCCGTACATAGACCGACGACG
CGGCTTCGTTTGGGGATTCAAGCGTCGCTTCTACCAGCACAGCATCGATC
ACCGGGGTATTCCCGAACGTCCTGGTCGCGTGGTCACCCTGCTGCCAGGC
GATCCCGCCCAGGATCGTGTCTATGGCGTCGCCTATCGCATAGCTGCTAG
TCAAAAGGGTGCTGTGTTGGACCATCTGGATTACCGGGAGAAGAACGGGT
ATGAGCGCTGCAGCTTGGAGTTCCACGAGTATCCGACTGACGGTGCAGAA
CCCATCCAAGTGATCATGTACGTGGCCACGCAGGCGAACGATTCCTATGC
TGGTGATGTGTGGCAAGTTCCCTGTATTGCGAGGCAAATCTTCAGCTCGG
CCGGTCCCAGTGGCCCCAATCGCGAATACCTATTCAACCTGGCCGCCGCC
ATGGATCAGCTCTTTCCGGGAGCTGTAGACGAGCATCTCGAAGAACTGGT
TGCTTGCGTTAAGCGTTACATTGTCGAGGATGAGCCCCAGTTAATACGCC
ATGCGCTGTTGCATGAGATTTCCGGTATTCTGGAGGAGGAACAGCTAGCG
GAGCAGGCACACCAGCTGGAGAAGCTTTTGGAGCGATGTCAGAAACCTGG
CGGCCGCGAGTGGTTGATCTACGCTGCACTGCAAGCTAAAAACAAGTCGT
GAAAGCTTTCTAGACCAT
BS06129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2540-RA | 936 | CG2540-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2540-RA | 1234 | CG2540-RA | 82..1017 | 17..952 | 4680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12629959..12630894 | 17..952 | 4680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:03:41 has no hits.
BS06129.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:08 Download gff for
BS06129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-RA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:59 Download gff for
BS06129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-RA | 47..985 | 11..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:47 Download gff for
BS06129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-RA | 87..1016 | 22..951 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:08 Download gff for
BS06129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-RA | 47..985 | 11..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:39 Download gff for
BS06129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2540-RA | 87..1016 | 22..951 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:39 Download gff for
BS06129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12629964..12630893 | 22..951 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:47 Download gff for
BS06129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12523997..12524926 | 22..951 | 100 | | Plus |
BS06129.pep Sequence
Translation from 16 to 951
> BS06129.pep
MLDFLTELRSSGSRADQLPGNIYTEFFANVIEEPREHGCKSADQDFTQGF
SMLRTFDTENSNQLEPPAATDADVWIFGYGSLVWKTDFPYIDRRRGFVWG
FKRRFYQHSIDHRGIPERPGRVVTLLPGDPAQDRVYGVAYRIAASQKGAV
LDHLDYREKNGYERCSLEFHEYPTDGAEPIQVIMYVATQANDSYAGDVWQ
VPCIARQIFSSAGPSGPNREYLFNLAAAMDQLFPGAVDEHLEELVACVKR
YIVEDEPQLIRHALLHEISGILEEEQLAEQAHQLEKLLERCQKPGGREWL
IYAALQAKNKS*
BS06129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2540-PA | 311 | CG2540-PA | 1..311 | 1..311 | 1656 | 100 | Plus |
| CG10365-PD | 284 | CG10365-PD | 46..228 | 60..244 | 303 | 40.9 | Plus |
| CG10365-PA | 284 | CG10365-PA | 46..228 | 60..244 | 303 | 40.9 | Plus |
| CG10365-PB | 284 | CG10365-PB | 46..228 | 60..244 | 303 | 40.9 | Plus |
| CG10365-PC | 284 | CG10365-PC | 46..228 | 60..244 | 303 | 40.9 | Plus |
