Clone Sequence Records
BS06131.3prime Sequence
819 bp (818 high quality bases) assembled on 2005-12-03
> BS06131.3prime
ATGGTCTAGAAAGCTTCTACATCGTCTGTGTGTTCTCGATGACCTTCTCG
TTGTCGTAGATCTCCTTGGCGTAGCACAGATTGGGGTAGTCGTAGGCAGC
TCCATATCGGTTCTTGCAGCCGGTGGTTGCCTTCTCTCCCGGAGTGTAGA
CAGGCTGACCCACAATGTTCGATGTGGCGAAGTTGCAGGTGAGTACGAAG
TGGTTGTAAAAGTCCCGGGAGAAGCGCACGGCCGCACATCCCACATGGGT
GTTCTTCTCGGCCACCGCGATGGTGAACTTGGTCACCGCCTTGTTGGGAA
GCTCCTCCGGGAAGCTGGCGAGGATCTCGGGAGATGCATTCGAGCGCTCA
GCAAACCAGTTCTCGATCTGCTCCTTTATTATTTCCGCATCGGTGTACTC
TGTCTCGGCTCCGCTGTACTGGAACAAGGCGTTGTTCTGGCCGGCGTAGG
CGAATCTCTCGGTGCTGCGACATTTATCTGGCAGGGACTCACAGGTCTTT
ACGTTCAGCAAGGCCAGATGGGAGAGCTCCTCGCACCAGGACATCTTGGC
CATGCGAACAGCCTTGGGTAGTCCTTCTATTTTGCCTCCAGCCACGTTGT
TGCGCAGCTCGTTGAAGAGATTGAGGATGAGTTTGTGATGCGGCTCGATC
TTCACCTCACGCACGTCCTTGGGACAATTTTCACTGAAATTTCCCTTGTT
GTTGCAGGCTATGTGCTTGTCCAGGCACGTGGGCAGAGCACAATAGTCCG
CTGCAAGGCTTATTCCCAGCAGGGAAGTAAGCAAAATCAGACACTTAATG
GCCATGTCGACTGATAACT
BS06131.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17210-PA | 789 | scpr-B-RA | 1..789 | 805..17 | 3945 | 100 | Minus |
CG5106-PA | 789 | scpr-C-RA | 1..789 | 805..17 | 3695 | 98.7 | Minus |
CG5207-PA | 795 | scpr-A-RA | 103..794 | 709..18 | 3135 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-B-RA | 898 | CG17210-RA | 13..801 | 805..17 | 3945 | 100 | Minus |
scpr-C-RB | 1109 | CG5106-RB | 17..805 | 805..17 | 3795 | 98.7 | Minus |
scpr-C-RA | 910 | CG5106-RA | 17..805 | 805..17 | 3795 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11240138..11240812 | 17..691 | 3375 | 100 | Plus |
3R | 32079331 | 3R | 11225703..11226377 | 691..17 | 3240 | 98.7 | Minus |
3R | 32079331 | 3R | 11241384..11242062 | 688..10 | 3200 | 98.1 | Minus |
3R | 32079331 | 3R | 11240866..11240979 | 692..805 | 570 | 100 | Plus |
3R | 32079331 | 3R | 11225536..11225649 | 805..692 | 555 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:30:25 has no hits.
BS06131.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:56 Download gff for
BS06131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17210-PA | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:52 Download gff for
BS06131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17210-PA | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:38:07 Download gff for
BS06131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..801 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:02:02 Download gff for
BS06131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..801 | 17..805 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:02:02 Download gff for
BS06131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11240138..11240812 | 17..691 | 100 | <- | Plus |
3R | 11240866..11240979 | 692..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:38:07 Download gff for
BS06131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7065860..7066534 | 17..691 | 100 | <- | Plus |
arm_3R | 7066588..7066701 | 692..805 | 100 | | Plus |
BS06131.5prime Sequence
819 bp (707 high quality bases) assembled on 2005-12-03
> BS06131.5prime
GAAGTTATCAGTCGACATGGCCATTAAGTGTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCATCACAAACTCATCCTCA
ATCTCTTCAACGAGCTGCGCAACAACGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCTTGTTC
CAGTACAGCGGAGCCGAGACAGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAGGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCGGCCGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGCTGCAAGAACCGATATGGAGCTGCCTACGACTACCCCAATCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGTAGAAGCTTTCTAGACC
BS06131.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17210-PA | 789 | scpr-B-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG5106-PA | 789 | scpr-C-RA | 1..789 | 17..805 | 3695 | 98.7 | Plus |
CG5207-PA | 795 | scpr-A-RA | 103..794 | 113..804 | 3135 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-B-RA | 898 | CG17210-RA | 13..801 | 17..805 | 3945 | 100 | Plus |
scpr-C-RB | 1109 | CG5106-RB | 17..805 | 17..805 | 3795 | 98.7 | Plus |
scpr-C-RA | 910 | CG5106-RA | 17..805 | 17..805 | 3795 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11240138..11240812 | 805..131 | 3375 | 100 | Minus |
3R | 32079331 | 3R | 11225703..11226377 | 131..805 | 3240 | 98.7 | Plus |
3R | 32079331 | 3R | 11241384..11242062 | 134..812 | 3200 | 98.1 | Plus |
3R | 32079331 | 3R | 11240866..11240979 | 130..17 | 570 | 100 | Minus |
3R | 32079331 | 3R | 11225536..11225649 | 17..130 | 555 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:57:56 has no hits.
BS06131.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:57 Download gff for
BS06131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17210-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:54 Download gff for
BS06131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17210-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:45:56 Download gff for
BS06131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..801 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:20 Download gff for
BS06131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..801 | 17..805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:20 Download gff for
BS06131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11240138..11240812 | 131..805 | 100 | <- | Minus |
3R | 11240866..11240979 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:45:56 Download gff for
BS06131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7066588..7066701 | 17..130 | 100 | | Minus |
arm_3R | 7065860..7066534 | 131..805 | 100 | <- | Minus |
BS06131.complete Sequence
821 bp (821 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635365
> BS06131.complete
GAAGTTATCAGTCGACATGGCCATTAAGTGTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCATCACAAACTCATCCTCA
ATCTCTTCAACGAGCTGCGCAACAACGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCTTGTTC
CAGTACAGCGGAGCCGAGACAGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAGGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCGGCCGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGCTGCAAGAACCGATATGGAGCTGCCTACGACTACCCCAATCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGTAGAAGCTTTCTAGACCAT
BS06131.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-B-RA | 789 | CG17210-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
scpr-C-RB | 789 | CG5106-PB | 1..789 | 17..805 | 3795 | 98.7 | Plus |
scpr-C-RA | 789 | CG5106-PA | 1..789 | 17..805 | 3795 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-B-RA | 898 | CG17210-RA | 13..801 | 17..805 | 3945 | 100 | Plus |
scpr-C-RB | 1109 | CG5106-RB | 17..805 | 17..805 | 3795 | 98.7 | Plus |
scpr-C-RA | 910 | CG5106-RA | 17..805 | 17..805 | 3795 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11240138..11240812 | 805..131 | 3375 | 100 | Minus |
3R | 32079331 | 3R | 11225703..11226377 | 131..805 | 3240 | 98.7 | Plus |
3R | 32079331 | 3R | 11241384..11242062 | 134..812 | 3200 | 98.1 | Plus |
3R | 32079331 | 3R | 11240866..11240979 | 130..17 | 570 | 100 | Minus |
3R | 32079331 | 3R | 11225536..11225649 | 17..130 | 555 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:40:45 has no hits.
BS06131.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:09 Download gff for
BS06131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:01 Download gff for
BS06131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..801 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:22 Download gff for
BS06131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..801 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:09 Download gff for
BS06131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..801 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:42 Download gff for
BS06131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..801 | 17..805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:42 Download gff for
BS06131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11240866..11240979 | 17..130 | 100 | | Minus |
3R | 11240138..11240812 | 131..805 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:22 Download gff for
BS06131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7065860..7066534 | 131..805 | 100 | <- | Minus |
arm_3R | 7066588..7066701 | 17..130 | 100 | | Minus |
BS06131.pep Sequence
Translation from 16 to 804
> BS06131.pep
MAIKCLILLTSLLGISLAADYCALPTCLDKHIACNNKGNFSENCPKDVRE
VKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALL
NVKTCESLPDKCRSTERFAYAGQNNALFQYSGAETEYTDAEIIKEQIENW
FAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSRDFY
NHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAKEIY
DNEKVIENTQTM*
BS06131.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-B-PA | 262 | CG17210-PA | 1..262 | 1..262 | 1394 | 100 | Plus |
scpr-C-PB | 262 | CG5106-PB | 1..262 | 1..262 | 1381 | 99.2 | Plus |
scpr-C-PA | 262 | CG5106-PA | 1..262 | 1..262 | 1381 | 99.2 | Plus |
scpr-A-PA | 264 | CG5207-PA | 9..264 | 7..262 | 1324 | 95.7 | Plus |
Ag5r2-PA | 254 | CG9540-PA | 1..250 | 1..251 | 411 | 34.6 | Plus |