Clone BS06131 Report

Search the DGRC for BS06131

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptscpr-B-RA
Protein status:BS06131.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06131.3prime Sequence

819 bp (818 high quality bases) assembled on 2005-12-03

> BS06131.3prime
ATGGTCTAGAAAGCTTCTACATCGTCTGTGTGTTCTCGATGACCTTCTCG
TTGTCGTAGATCTCCTTGGCGTAGCACAGATTGGGGTAGTCGTAGGCAGC
TCCATATCGGTTCTTGCAGCCGGTGGTTGCCTTCTCTCCCGGAGTGTAGA
CAGGCTGACCCACAATGTTCGATGTGGCGAAGTTGCAGGTGAGTACGAAG
TGGTTGTAAAAGTCCCGGGAGAAGCGCACGGCCGCACATCCCACATGGGT
GTTCTTCTCGGCCACCGCGATGGTGAACTTGGTCACCGCCTTGTTGGGAA
GCTCCTCCGGGAAGCTGGCGAGGATCTCGGGAGATGCATTCGAGCGCTCA
GCAAACCAGTTCTCGATCTGCTCCTTTATTATTTCCGCATCGGTGTACTC
TGTCTCGGCTCCGCTGTACTGGAACAAGGCGTTGTTCTGGCCGGCGTAGG
CGAATCTCTCGGTGCTGCGACATTTATCTGGCAGGGACTCACAGGTCTTT
ACGTTCAGCAAGGCCAGATGGGAGAGCTCCTCGCACCAGGACATCTTGGC
CATGCGAACAGCCTTGGGTAGTCCTTCTATTTTGCCTCCAGCCACGTTGT
TGCGCAGCTCGTTGAAGAGATTGAGGATGAGTTTGTGATGCGGCTCGATC
TTCACCTCACGCACGTCCTTGGGACAATTTTCACTGAAATTTCCCTTGTT
GTTGCAGGCTATGTGCTTGTCCAGGCACGTGGGCAGAGCACAATAGTCCG
CTGCAAGGCTTATTCCCAGCAGGGAAGTAAGCAAAATCAGACACTTAATG
GCCATGTCGACTGATAACT

BS06131.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17210-PA 789 scpr-B-RA 1..789 805..17 3945 100 Minus
CG5106-PA 789 scpr-C-RA 1..789 805..17 3695 98.7 Minus
CG5207-PA 795 scpr-A-RA 103..794 709..18 3135 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-B-RA 898 CG17210-RA 13..801 805..17 3945 100 Minus
scpr-C-RB 1109 CG5106-RB 17..805 805..17 3795 98.7 Minus
scpr-C-RA 910 CG5106-RA 17..805 805..17 3795 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11240138..11240812 17..691 3375 100 Plus
3R 32079331 3R 11225703..11226377 691..17 3240 98.7 Minus
3R 32079331 3R 11241384..11242062 688..10 3200 98.1 Minus
3R 32079331 3R 11240866..11240979 692..805 570 100 Plus
3R 32079331 3R 11225536..11225649 805..692 555 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 18:30:25 has no hits.

BS06131.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:56 Download gff for BS06131.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17210-PA 1..789 17..805 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:52 Download gff for BS06131.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17210-PA 1..789 17..805 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:38:07 Download gff for BS06131.3prime
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..801 17..805 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:02:02 Download gff for BS06131.3prime
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..801 17..805 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:02:02 Download gff for BS06131.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11240138..11240812 17..691 100 <- Plus
3R 11240866..11240979 692..805 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:38:07 Download gff for BS06131.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7065860..7066534 17..691 100 <- Plus
arm_3R 7066588..7066701 692..805 100   Plus

BS06131.5prime Sequence

819 bp (707 high quality bases) assembled on 2005-12-03

> BS06131.5prime
GAAGTTATCAGTCGACATGGCCATTAAGTGTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCATCACAAACTCATCCTCA
ATCTCTTCAACGAGCTGCGCAACAACGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCTTGTTC
CAGTACAGCGGAGCCGAGACAGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAGGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCGGCCGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGCTGCAAGAACCGATATGGAGCTGCCTACGACTACCCCAATCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGTAGAAGCTTTCTAGACC

BS06131.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17210-PA 789 scpr-B-RA 1..789 17..805 3945 100 Plus
CG5106-PA 789 scpr-C-RA 1..789 17..805 3695 98.7 Plus
CG5207-PA 795 scpr-A-RA 103..794 113..804 3135 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-B-RA 898 CG17210-RA 13..801 17..805 3945 100 Plus
scpr-C-RB 1109 CG5106-RB 17..805 17..805 3795 98.7 Plus
scpr-C-RA 910 CG5106-RA 17..805 17..805 3795 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11240138..11240812 805..131 3375 100 Minus
3R 32079331 3R 11225703..11226377 131..805 3240 98.7 Plus
3R 32079331 3R 11241384..11242062 134..812 3200 98.1 Plus
3R 32079331 3R 11240866..11240979 130..17 570 100 Minus
3R 32079331 3R 11225536..11225649 17..130 555 99.1 Plus
Blast to na_te.dros performed on 2015-02-10 21:57:56 has no hits.

BS06131.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:31:57 Download gff for BS06131.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17210-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:07:54 Download gff for BS06131.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17210-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:45:56 Download gff for BS06131.5prime
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..801 17..805 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:20 Download gff for BS06131.5prime
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..801 17..805 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:20 Download gff for BS06131.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11240138..11240812 131..805 100 <- Minus
3R 11240866..11240979 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:45:56 Download gff for BS06131.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7066588..7066701 17..130 100   Minus
arm_3R 7065860..7066534 131..805 100 <- Minus

BS06131.complete Sequence

821 bp (821 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635365

> BS06131.complete
GAAGTTATCAGTCGACATGGCCATTAAGTGTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCATCACAAACTCATCCTCA
ATCTCTTCAACGAGCTGCGCAACAACGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCTTGTTC
CAGTACAGCGGAGCCGAGACAGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAGGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCGGCCGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGCTGCAAGAACCGATATGGAGCTGCCTACGACTACCCCAATCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGTAGAAGCTTTCTAGACCAT

BS06131.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-B-RA 789 CG17210-PA 1..789 17..805 3945 100 Plus
scpr-C-RB 789 CG5106-PB 1..789 17..805 3795 98.7 Plus
scpr-C-RA 789 CG5106-PA 1..789 17..805 3795 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-B-RA 898 CG17210-RA 13..801 17..805 3945 100 Plus
scpr-C-RB 1109 CG5106-RB 17..805 17..805 3795 98.7 Plus
scpr-C-RA 910 CG5106-RA 17..805 17..805 3795 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11240138..11240812 805..131 3375 100 Minus
3R 32079331 3R 11225703..11226377 131..805 3240 98.7 Plus
3R 32079331 3R 11241384..11242062 134..812 3200 98.1 Plus
3R 32079331 3R 11240866..11240979 130..17 570 100 Minus
3R 32079331 3R 11225536..11225649 17..130 555 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 07:40:45 has no hits.

BS06131.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:09 Download gff for BS06131.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:01 Download gff for BS06131.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..801 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:22 Download gff for BS06131.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..801 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:09 Download gff for BS06131.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..801 17..805 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:42 Download gff for BS06131.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..801 17..805 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:42 Download gff for BS06131.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11240866..11240979 17..130 100   Minus
3R 11240138..11240812 131..805 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:22 Download gff for BS06131.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7065860..7066534 131..805 100 <- Minus
arm_3R 7066588..7066701 17..130 100   Minus

BS06131.pep Sequence

Translation from 16 to 804

> BS06131.pep
MAIKCLILLTSLLGISLAADYCALPTCLDKHIACNNKGNFSENCPKDVRE
VKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALL
NVKTCESLPDKCRSTERFAYAGQNNALFQYSGAETEYTDAEIIKEQIENW
FAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSRDFY
NHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAKEIY
DNEKVIENTQTM*

BS06131.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-B-PA 262 CG17210-PA 1..262 1..262 1394 100 Plus
scpr-C-PB 262 CG5106-PB 1..262 1..262 1381 99.2 Plus
scpr-C-PA 262 CG5106-PA 1..262 1..262 1381 99.2 Plus
scpr-A-PA 264 CG5207-PA 9..264 7..262 1324 95.7 Plus
Ag5r2-PA 254 CG9540-PA 1..250 1..251 411 34.6 Plus