Clone Sequence Records
BS06134.3prime Sequence
678 bp (677 high quality bases) assembled on 2005-12-03
> BS06134.3prime
ATGGTCTAGAAAGCTTCTACTTGTCGTATCGAACCAGGCGCGTGTCGTCG
CCGACCTCCTCCAGATCCTTTGGATCGCGGCGGAAGCGATAAGTGCCGAC
ATCCTGGTTGGCCGATTCCGGCAACGTCACCTTGATGCCCTTGTACTCGG
TTCGACCTTCCCTGACCTCCGGCACCCGCAGCTCCATCTCGGCCTTGTAC
TCGTCATCGTTACCAATGTCCACGTCCTGGACGTTCTTTTGCACGGTGGG
ATCCTCCTCGTCCTGGTTCCAGCCATCAATCTCGATGGGGACAATGGGGT
TGCCGTCGACGCCTACGACGGAACTAGGTGCGCCAGTAGGCAGGATCTCC
ACGGTATCTCCAGAAATCGGATTCTCTGCTGGTGGCGACTCAACTGCATC
CGCGTCCACTATGTTGGTCACCTCTTTGAATGGAGTATGGTCCATCAATG
TCAGCGAATTGACGAAATTGCGATTAAACTCTACGTCAGTCTTGGCCATC
TCATTTATATTGATATCTATCACGGTCACGCCATCGATGTTCCGCGGACG
GTCAATGGTGAGGCAAGTAAGACCAGTAGACATTTTGGAGTGCAAGGTCG
AGCGGGCCACACGGACACGGTGCAGCGCCAGCTGATTCCTCAGCATCGAA
AGATTGCGAAACATGTCGACTGATAACT
BS06134.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17470-PA | 648 | CG17470-RA | 1..648 | 664..17 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17470-RA | 939 | CG17470-RA | 140..790 | 665..15 | 3255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20642455..20643105 | 15..665 | 3255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:39:27 has no hits.
BS06134.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:02 Download gff for
BS06134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-PA | 1..648 | 17..664 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:01 Download gff for
BS06134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-PA | 1..648 | 17..664 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:56:31 Download gff for
BS06134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-RA | 140..790 | 15..665 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:10:01 Download gff for
BS06134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-RA | 140..790 | 15..665 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:10:01 Download gff for
BS06134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20642455..20643105 | 15..665 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:56:31 Download gff for
BS06134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20642455..20643105 | 15..665 | 100 | | Plus |
BS06134.5prime Sequence
678 bp (677 high quality bases) assembled on 2005-12-03
> BS06134.5prime
GAAGTTATCAGTCGACATGTTTCGCAATCTTTCGATGCTGAGGAATCAGC
TGGCGCTGCACCGTGTCCGTGTGGCCCGCTCGACCTTGCACTCCAAAATG
TCTACTGGTCTTACTTGCCTCACCATTGACCGTCCGCGGAACATCGATGG
CGTGACCGTGATAGATATCAATATAAATGAGATGGCCAAGACTGACGTAG
AGTTTAATCGCAATTTCGTCAATTCGCTGACATTGATGGACCATACTCCA
TTCAAAGAGGTGACCAACATAGTGGACGCGGATGCAGTTGAGTCGCCACC
AGCAGAGAATCCGATTTCTGGAGATACCGTGGAGATCCTGCCTACTGGCG
CACCTAGTTCCGTCGTAGGCGTCGACGGCAACCCCATTGTCCCCATCGAG
ATTGATGGCTGGAACCAGGACGAGGAGGATCCCACCGTGCAAAAGAACGT
CCAGGACGTGGACATTGGTAACGATGACGAGTACAAGGCCGAGATGGAGC
TGCGGGTGCCGGAGGTCAGGGAAGGTCGAACCGAGTACAAGGGCATCAAG
GTGACGTTGCCGGAATCGGCCAACCAGGATGTCGGCACTTATCGCTTCCG
CCGCGATCCAAAGGATCTGGAGGAGGTCGGCGACGACACGCGCCTGGTTC
GATACGACAAGTAGAAGCTTTCTAGACC
BS06134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17470-PA | 648 | CG17470-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17470-RA | 939 | CG17470-RA | 140..790 | 16..666 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20642455..20643105 | 666..16 | 3255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:31:28 has no hits.
BS06134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:03 Download gff for
BS06134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:02 Download gff for
BS06134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:45 Download gff for
BS06134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-RA | 140..790 | 16..666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:12 Download gff for
BS06134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-RA | 140..790 | 16..666 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:12 Download gff for
BS06134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20642455..20643105 | 16..666 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:45 Download gff for
BS06134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20642455..20643105 | 16..666 | 100 | | Minus |
BS06134.complete Sequence
680 bp (680 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635367
> BS06134.complete
GAAGTTATCAGTCGACATGTTTCGCAATCTTTCGATGCTGAGGAATCAGC
TGGCGCTGCACCGTGTCCGTGTGGCCCGCTCGACCTTGCACTCCAAAATG
TCTACTGGTCTTACTTGCCTCACCATTGACCGTCCGCGGAACATCGATGG
CGTGACCGTGATAGATATCAATATAAATGAGATGGCCAAGACTGACGTAG
AGTTTAATCGCAATTTCGTCAATTCGCTGACATTGATGGACCATACTCCA
TTCAAAGAGGTGACCAACATAGTGGACGCGGATGCAGTTGAGTCGCCACC
AGCAGAGAATCCGATTTCTGGAGATACCGTGGAGATCCTGCCTACTGGCG
CACCTAGTTCCGTCGTAGGCGTCGACGGCAACCCCATTGTCCCCATCGAG
ATTGATGGCTGGAACCAGGACGAGGAGGATCCCACCGTGCAAAAGAACGT
CCAGGACGTGGACATTGGTAACGATGACGAGTACAAGGCCGAGATGGAGC
TGCGGGTGCCGGAGGTCAGGGAAGGTCGAACCGAGTACAAGGGCATCAAG
GTGACGTTGCCGGAATCGGCCAACCAGGATGTCGGCACTTATCGCTTCCG
CCGCGATCCAAAGGATCTGGAGGAGGTCGGCGACGACACGCGCCTGGTTC
GATACGACAAGTAGAAGCTTTCTAGACCAT
BS06134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17470-RA | 648 | CG17470-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17470-RA | 939 | CG17470-RA | 140..790 | 16..666 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20642455..20643105 | 666..16 | 3255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:41:04 has no hits.
BS06134.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:25 Download gff for
BS06134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-RA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:06 Download gff for
BS06134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-RA | 140..790 | 16..666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:00 Download gff for
BS06134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-RA | 147..788 | 23..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:26 Download gff for
BS06134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-RA | 140..790 | 16..666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:47 Download gff for
BS06134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17470-RA | 147..788 | 23..664 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:47 Download gff for
BS06134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20642457..20643098 | 23..664 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:00 Download gff for
BS06134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20642457..20643098 | 23..664 | 100 | | Minus |
BS06134.pep Sequence
Translation from 16 to 663
> BS06134.pep
MFRNLSMLRNQLALHRVRVARSTLHSKMSTGLTCLTIDRPRNIDGVTVID
ININEMAKTDVEFNRNFVNSLTLMDHTPFKEVTNIVDADAVESPPAENPI
SGDTVEILPTGAPSSVVGVDGNPIVPIEIDGWNQDEEDPTVQKNVQDVDI
GNDDEYKAEMELRVPEVREGRTEYKGIKVTLPESANQDVGTYRFRRDPKD
LEEVGDDTRLVRYDK*
BS06134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17470-PA | 215 | CG17470-PA | 1..215 | 1..215 | 1113 | 100 | Plus |