Clone BS06134 Report

Search the DGRC for BS06134

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG17470-RA
Protein status:BS06134.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06134.3prime Sequence

678 bp (677 high quality bases) assembled on 2005-12-03

> BS06134.3prime
ATGGTCTAGAAAGCTTCTACTTGTCGTATCGAACCAGGCGCGTGTCGTCG
CCGACCTCCTCCAGATCCTTTGGATCGCGGCGGAAGCGATAAGTGCCGAC
ATCCTGGTTGGCCGATTCCGGCAACGTCACCTTGATGCCCTTGTACTCGG
TTCGACCTTCCCTGACCTCCGGCACCCGCAGCTCCATCTCGGCCTTGTAC
TCGTCATCGTTACCAATGTCCACGTCCTGGACGTTCTTTTGCACGGTGGG
ATCCTCCTCGTCCTGGTTCCAGCCATCAATCTCGATGGGGACAATGGGGT
TGCCGTCGACGCCTACGACGGAACTAGGTGCGCCAGTAGGCAGGATCTCC
ACGGTATCTCCAGAAATCGGATTCTCTGCTGGTGGCGACTCAACTGCATC
CGCGTCCACTATGTTGGTCACCTCTTTGAATGGAGTATGGTCCATCAATG
TCAGCGAATTGACGAAATTGCGATTAAACTCTACGTCAGTCTTGGCCATC
TCATTTATATTGATATCTATCACGGTCACGCCATCGATGTTCCGCGGACG
GTCAATGGTGAGGCAAGTAAGACCAGTAGACATTTTGGAGTGCAAGGTCG
AGCGGGCCACACGGACACGGTGCAGCGCCAGCTGATTCCTCAGCATCGAA
AGATTGCGAAACATGTCGACTGATAACT

BS06134.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17470-PA 648 CG17470-RA 1..648 664..17 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17470-RA 939 CG17470-RA 140..790 665..15 3255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20642455..20643105 15..665 3255 100 Plus
Blast to na_te.dros performed on 2015-02-09 01:39:27 has no hits.

BS06134.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:02 Download gff for BS06134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17470-PA 1..648 17..664 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:01 Download gff for BS06134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17470-PA 1..648 17..664 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:56:31 Download gff for BS06134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17470-RA 140..790 15..665 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:10:01 Download gff for BS06134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17470-RA 140..790 15..665 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:10:01 Download gff for BS06134.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20642455..20643105 15..665 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:56:31 Download gff for BS06134.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20642455..20643105 15..665 100   Plus

BS06134.5prime Sequence

678 bp (677 high quality bases) assembled on 2005-12-03

> BS06134.5prime
GAAGTTATCAGTCGACATGTTTCGCAATCTTTCGATGCTGAGGAATCAGC
TGGCGCTGCACCGTGTCCGTGTGGCCCGCTCGACCTTGCACTCCAAAATG
TCTACTGGTCTTACTTGCCTCACCATTGACCGTCCGCGGAACATCGATGG
CGTGACCGTGATAGATATCAATATAAATGAGATGGCCAAGACTGACGTAG
AGTTTAATCGCAATTTCGTCAATTCGCTGACATTGATGGACCATACTCCA
TTCAAAGAGGTGACCAACATAGTGGACGCGGATGCAGTTGAGTCGCCACC
AGCAGAGAATCCGATTTCTGGAGATACCGTGGAGATCCTGCCTACTGGCG
CACCTAGTTCCGTCGTAGGCGTCGACGGCAACCCCATTGTCCCCATCGAG
ATTGATGGCTGGAACCAGGACGAGGAGGATCCCACCGTGCAAAAGAACGT
CCAGGACGTGGACATTGGTAACGATGACGAGTACAAGGCCGAGATGGAGC
TGCGGGTGCCGGAGGTCAGGGAAGGTCGAACCGAGTACAAGGGCATCAAG
GTGACGTTGCCGGAATCGGCCAACCAGGATGTCGGCACTTATCGCTTCCG
CCGCGATCCAAAGGATCTGGAGGAGGTCGGCGACGACACGCGCCTGGTTC
GATACGACAAGTAGAAGCTTTCTAGACC

BS06134.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17470-PA 648 CG17470-RA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17470-RA 939 CG17470-RA 140..790 16..666 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20642455..20643105 666..16 3255 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:31:28 has no hits.

BS06134.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:03 Download gff for BS06134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17470-PA 1..648 17..664 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:02 Download gff for BS06134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17470-PA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:45 Download gff for BS06134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17470-RA 140..790 16..666 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:12 Download gff for BS06134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17470-RA 140..790 16..666 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:12 Download gff for BS06134.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20642455..20643105 16..666 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:45 Download gff for BS06134.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20642455..20643105 16..666 100   Minus

BS06134.complete Sequence

680 bp (680 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635367

> BS06134.complete
GAAGTTATCAGTCGACATGTTTCGCAATCTTTCGATGCTGAGGAATCAGC
TGGCGCTGCACCGTGTCCGTGTGGCCCGCTCGACCTTGCACTCCAAAATG
TCTACTGGTCTTACTTGCCTCACCATTGACCGTCCGCGGAACATCGATGG
CGTGACCGTGATAGATATCAATATAAATGAGATGGCCAAGACTGACGTAG
AGTTTAATCGCAATTTCGTCAATTCGCTGACATTGATGGACCATACTCCA
TTCAAAGAGGTGACCAACATAGTGGACGCGGATGCAGTTGAGTCGCCACC
AGCAGAGAATCCGATTTCTGGAGATACCGTGGAGATCCTGCCTACTGGCG
CACCTAGTTCCGTCGTAGGCGTCGACGGCAACCCCATTGTCCCCATCGAG
ATTGATGGCTGGAACCAGGACGAGGAGGATCCCACCGTGCAAAAGAACGT
CCAGGACGTGGACATTGGTAACGATGACGAGTACAAGGCCGAGATGGAGC
TGCGGGTGCCGGAGGTCAGGGAAGGTCGAACCGAGTACAAGGGCATCAAG
GTGACGTTGCCGGAATCGGCCAACCAGGATGTCGGCACTTATCGCTTCCG
CCGCGATCCAAAGGATCTGGAGGAGGTCGGCGACGACACGCGCCTGGTTC
GATACGACAAGTAGAAGCTTTCTAGACCAT

BS06134.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17470-RA 648 CG17470-PA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17470-RA 939 CG17470-RA 140..790 16..666 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20642455..20643105 666..16 3255 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:41:04 has no hits.

BS06134.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:25 Download gff for BS06134.complete
Subject Subject Range Query Range Percent Splice Strand
CG17470-RA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:06 Download gff for BS06134.complete
Subject Subject Range Query Range Percent Splice Strand
CG17470-RA 140..790 16..666 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:00 Download gff for BS06134.complete
Subject Subject Range Query Range Percent Splice Strand
CG17470-RA 147..788 23..664 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:26 Download gff for BS06134.complete
Subject Subject Range Query Range Percent Splice Strand
CG17470-RA 140..790 16..666 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:47 Download gff for BS06134.complete
Subject Subject Range Query Range Percent Splice Strand
CG17470-RA 147..788 23..664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:47 Download gff for BS06134.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20642457..20643098 23..664 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:00 Download gff for BS06134.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20642457..20643098 23..664 100   Minus

BS06134.pep Sequence

Translation from 16 to 663

> BS06134.pep
MFRNLSMLRNQLALHRVRVARSTLHSKMSTGLTCLTIDRPRNIDGVTVID
ININEMAKTDVEFNRNFVNSLTLMDHTPFKEVTNIVDADAVESPPAENPI
SGDTVEILPTGAPSSVVGVDGNPIVPIEIDGWNQDEEDPTVQKNVQDVDI
GNDDEYKAEMELRVPEVREGRTEYKGIKVTLPESANQDVGTYRFRRDPKD
LEEVGDDTRLVRYDK*

BS06134.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17470-PA 215 CG17470-PA 1..215 1..215 1113 100 Plus