Clone BS06137 Report

Search the DGRC for BS06137

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG32278-RA
Protein status:BS06137.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06137.3prime Sequence

366 bp (365 high quality bases) assembled on 2005-12-03

> BS06137.3prime
ATGGTCTAGAAAGCTTTTAGAACTTGAGTTTGCTTAGTGTGTCGGACACT
TTCTGGGCATCGACCCCCTTCTTCTTGTAGCTCTTGATGGGTGCCACAGG
TGCCTTTGGCTTCTTCACCACCAGATCCTTGTGTAGAGTCTTCAGGCTGG
CGTCCAATTTCTCCTGCTTAGCTTTAACAGATTCCTTGATCTGCTTGAGC
TTGCCCTGCACTTCCTTGGGCTTCTTGCCCTTGCCCTTGTTACCGTCGCC
CACTTTGAATACGTTCTTGGCCTTTTTGGACTTGTTCAGAGCCGACTTTG
GCTTGGCGGCCCCAGGAGTAACCTTCTTGTTGTTTGCCTTGTTGCGACCC
ATGTCGACTGATAACT

BS06137.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-PA 336 CG32278-RA 1..336 352..17 1680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-RA 845 CG32278-RA 80..415 352..17 1680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3171160..3171337 194..17 890 100 Minus
3L 28110227 3L 3170945..3171106 352..191 810 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:31:18 has no hits.

BS06137.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:06 Download gff for BS06137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-PA 1..336 17..352 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:06 Download gff for BS06137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-PA 1..336 17..352 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:07 Download gff for BS06137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 70..417 13..362 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:44:49 Download gff for BS06137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 70..417 13..362 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:44:49 Download gff for BS06137.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3171164..3171339 13..190 98   Minus
3L 3170945..3171106 191..352 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:07 Download gff for BS06137.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3171164..3171339 13..190 98   Minus
arm_3L 3170945..3171106 191..352 100 -> Minus

BS06137.5prime Sequence

366 bp (365 high quality bases) assembled on 2005-12-03

> BS06137.5prime
GAAGTTATCAGTCGACATGGGTCGCAACAAGGCAAACAACAAGAAGGTTA
CTCCTGGGGCCGCCAAGCCAAAGTCGGCTCTGAACAAGTCCAAAAAGGCC
AAGAACGTATTCAAAGTGGGCGACGGTAACAAGGGCAAGGGCAAGAAGCC
CAAGGAAGTGCAGGGCAAGCTCAAGCAGATCAAGGAATCTGTTAAAGCTA
AGCAGGAGAAATTGGACGCCAGCCTGAAGACTCTACACAAGGATCTGGTG
GTGAAGAAGCCAAAGGCACCTGTGGCACCCATCAAGAGCTACAAGAAGAA
GGGGGTCGATGCCCAGAAAGTGTCCGACACACTAAGCAAACTCAAGTTCT
AAAAGCTTTCTAGACC

BS06137.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-PA 336 CG32278-RA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-RA 845 CG32278-RA 80..415 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3171160..3171337 175..352 890 100 Plus
3L 28110227 3L 3170945..3171106 17..178 810 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:51:43 has no hits.

BS06137.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:07 Download gff for BS06137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-PA 1..336 17..352 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:07 Download gff for BS06137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-PA 1..336 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:58:42 Download gff for BS06137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 70..417 7..356 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:02 Download gff for BS06137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 70..417 7..356 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:02 Download gff for BS06137.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3170945..3171106 17..178 100 -> Plus
3L 3171164..3171339 179..356 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:58:42 Download gff for BS06137.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3170945..3171106 17..178 100 -> Plus
arm_3L 3171164..3171339 179..356 98   Plus

BS06137.complete Sequence

368 bp (368 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635368

> BS06137.complete
GAAGTTATCAGTCGACATGGGTCGCAACAAGGCAAACAACAAGAAGGTTA
CTCCTGGGGCCGCCAAGCCAAAGTCGGCTCTGAACAAGTCCAAAAAGGCC
AAGAACGTATTCAAAGTGGGCGACGGTAACAAGGGCAAGGGCAAGAAGCC
CAAGGAAGTGCAGGGCAAGCTCAAGCAGATCAAGGAATCTGTTAAAGCTA
AGCAGGAGAAATTGGACGCCAGCCTGAAGACTCTACACAAGGATCTGGTG
GTGAAGAAGCCAAAGGCACCTGTGGCACCCATCAAGAGCTACAAGAAGAA
GGGGGTCGATGCCCAGAAAGTGTCCGACACACTAAGCAAACTCAAGTTCT
AAAAGCTTTCTAGACCAT

BS06137.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-RA 336 CG32278-PA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-RA 845 CG32278-RA 80..415 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3171160..3171337 175..352 890 100 Plus
3L 28110227 3L 3170945..3171106 17..178 810 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:44:51 has no hits.

BS06137.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:19 Download gff for BS06137.complete
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 1..336 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:59 Download gff for BS06137.complete
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 69..416 7..356 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:58 Download gff for BS06137.complete
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 80..413 17..350 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:19 Download gff for BS06137.complete
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 69..416 7..356 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:22 Download gff for BS06137.complete
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 80..413 17..350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:22 Download gff for BS06137.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3170945..3171106 17..178 100 -> Plus
3L 3171164..3171335 179..350 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:58 Download gff for BS06137.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3170945..3171106 17..178 100 -> Plus
arm_3L 3171164..3171335 179..350 100   Plus

BS06137.pep Sequence

Translation from 16 to 351

> BS06137.pep
MGRNKANNKKVTPGAAKPKSALNKSKKAKNVFKVGDGNKGKGKKPKEVQG
KLKQIKESVKAKQEKLDASLKTLHKDLVVKKPKAPVAPIKSYKKKGVDAQ
KVSDTLSKLKF*

BS06137.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-PA 111 CG32278-PA 1..111 1..111 556 100 Plus