Clone Sequence Records
BS06140.3prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-03
> BS06140.3prime
ATGGTCTAGAAAGCTTCTAGATGCGAATCGAGCGCATGACAGGAACGGGA
GACGGACCAACCGACGTGGACGCTGTGCGTCTTGGCTTCGAACAGACGTC
CACGCGCTGGCGCTTCTTGGGCGGCTCCTTTTGGTCATCGTCCTCCTGCA
GCCGAGGTATGGAAATCTCATCCAGCTGCTGCTGCGACTGTTCCCTAAGG
AAACAGTTCTGACGATGCACAGGAATGGCGCCGGCAGTGGGCAGCGATCC
CAGGAAGCAATTCATCCGGTAGACCGGCACCGGCTTGTACTCCGGCACCG
GATCTTCCTTTTCTTGGTCCTCCTCCTTCTGACCCTCGGCTTGCTCCAAA
TCCACTAGACGCTTTCGCTTAAGGGACTCGGTCTGGCCCAGACTGCGGCG
CATCTTTGACCAGTCAAATCTCAGGTGAAAGGTGATCTCCGGGCAGGGGA
ACAAAAGCAGGAAATACTCCAGCAAATGCGCCTCAAACACGTAGTCCTTG
CCGTTGGTCAGGATGAGGGCTTTCCTTTGTGTCTCCGGAATGGCGAAGCG
GGTCATGGCTTGGGAGATGACCTCTTCGTAAGTGTTCGAGGATCCGCAAG
TGATGAGGTTGGTCTCGCCCTGGAAGAGAACCTTCAAGCTGCTCCTGATA
TCGGCCATGTCGACTGATAACT
BS06140.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10965-PA | 642 | Corp-RA | 1..642 | 658..17 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Corp-RB | 1216 | CG10965-RB | 148..789 | 658..17 | 3210 | 100 | Minus |
| Corp-RA | 1084 | CG10965-RA | 148..789 | 658..17 | 3210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8270325..8270868 | 17..560 | 2720 | 100 | Plus |
| X | 23542271 | X | 8271163..8271262 | 559..658 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:08:17 has no hits.
BS06140.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:13 Download gff for
BS06140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Corp-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:14 Download gff for
BS06140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10965-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:45:48 Download gff for
BS06140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Corp-RA | 145..789 | 17..665 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:48 Download gff for
BS06140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Corp-RA | 145..789 | 17..665 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:48 Download gff for
BS06140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8270325..8270866 | 17..558 | 100 | <- | Plus |
| X | 8271163..8271265 | 559..665 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:45:48 Download gff for
BS06140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8164358..8164899 | 17..558 | 100 | <- | Plus |
| arm_X | 8165196..8165298 | 559..665 | 96 | | Plus |
BS06140.5prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-03
> BS06140.5prime
GAAGTTATCAGTCGACATGGCCGATATCAGGAGCAGCTTGAAGGTTCTCT
TCCAGGGCGAGACCAACCTCATCACTTGCGGATCCTCGAACACTTACGAA
GAGGTCATCTCCCAAGCCATGACCCGCTTCGCCATTCCGGAGACACAAAG
GAAAGCCCTCATCCTGACCAACGGCAAGGACTACGTGTTTGAGGCGCATT
TGCTGGAGTATTTCCTGCTTTTGTTCCCCTGCCCGGAGATCACCTTTCAC
CTGAGATTTGACTGGTCAAAGATGCGCCGCAGTCTGGGCCAGACCGAGTC
CCTTAAGCGAAAGCGTCTAGTGGATTTGGAGCAAGCCGAGGGTCAGAAGG
AGGAGGACCAAGAAAAGGAAGATCCGGTGCCGGAGTACAAGCCGGTGCCG
GTCTACCGGATGAATTGCTTCCTGGGATCGCTGCCCACTGCCGGCGCCAT
TCCTGTGCATCGTCAGAACTGTTTCCTTAGGGAACAGTCGCAGCAGCAGC
TGGATGAGATTTCCATACCTCGGCTGCAGGAGGACGATGACCAAAAGGAG
CCGCCCAAGAAGCGCCAGCGCGTGGACGTCTGTTCGAAGCCAAGACGCAC
AGCGTCCACGTCGGTTGGTCCGTCTCCCGTTCCTGTCATGCGCTCGATTC
GCATCTAGAAGCTTTCTAGACC
BS06140.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10965-PA | 642 | Corp-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Corp-RB | 1216 | CG10965-RB | 148..789 | 17..658 | 3210 | 100 | Plus |
| Corp-RA | 1084 | CG10965-RA | 148..789 | 17..658 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:18:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8270325..8270868 | 658..115 | 2720 | 100 | Minus |
| X | 23542271 | X | 8271163..8271262 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:18:41 has no hits.
BS06140.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:14 Download gff for
BS06140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Corp-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:16 Download gff for
BS06140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10965-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:50 Download gff for
BS06140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Corp-RA | 145..789 | 10..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:35 Download gff for
BS06140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Corp-RA | 145..789 | 10..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:35 Download gff for
BS06140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8270325..8270866 | 117..658 | 100 | <- | Minus |
| X | 8271163..8271265 | 10..116 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:50 Download gff for
BS06140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8164358..8164899 | 117..658 | 100 | <- | Minus |
| arm_X | 8165196..8165298 | 10..116 | 96 | | Minus |
BS06140.complete Sequence
674 bp (674 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635369
> BS06140.complete
GAAGTTATCAGTCGACATGGCCGATATCAGGAGCAGCTTGAAGGTTCTCT
TCCAGGGCGAGACCAACCTCATCACTTGCGGATCCTCGAACACTTACGAA
GAGGTCATCTCCCAAGCCATGACCCGCTTCGCCATTCCGGAGACACAAAG
GAAAGCCCTCATCCTGACCAACGGCAAGGACTACGTGTTTGAGGCGCATT
TGCTGGAGTATTTCCTGCTTTTGTTCCCCTGCCCGGAGATCACCTTTCAC
CTGAGATTTGACTGGTCAAAGATGCGCCGCAGTCTGGGCCAGACCGAGTC
CCTTAAGCGAAAGCGTCTAGTGGATTTGGAGCAAGCCGAGGGTCAGAAGG
AGGAGGACCAAGAAAAGGAAGATCCGGTGCCGGAGTACAAGCCGGTGCCG
GTCTACCGGATGAATTGCTTCCTGGGATCGCTGCCCACTGCCGGCGCCAT
TCCTGTGCATCGTCAGAACTGTTTCCTTAGGGAACAGTCGCAGCAGCAGC
TGGATGAGATTTCCATACCTCGGCTGCAGGAGGACGATGACCAAAAGGAG
CCGCCCAAGAAGCGCCAGCGCGTGGACGTCTGTTCGAAGCCAAGACGCAC
AGCGTCCACGTCGGTTGGTCCGTCTCCCGTTCCTGTCATGCGCTCGATTC
GCATCTAGAAGCTTTCTAGACCAT
BS06140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Corp-RB | 642 | CG10965-PB | 1..642 | 17..658 | 3210 | 100 | Plus |
| Corp-RA | 642 | CG10965-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Corp-RB | 1216 | CG10965-RB | 148..789 | 17..658 | 3210 | 100 | Plus |
| Corp-RA | 1084 | CG10965-RA | 148..789 | 17..658 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8270325..8270868 | 658..115 | 2720 | 100 | Minus |
| X | 23542271 | X | 8271163..8271262 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:04:53 has no hits.
BS06140.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:31 Download gff for
BS06140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Corp-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:52 Download gff for
BS06140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Corp-RA | 140..784 | 10..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:23 Download gff for
BS06140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Corp-RA | 148..789 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:31 Download gff for
BS06140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Corp-RA | 140..784 | 10..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:03 Download gff for
BS06140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Corp-RA | 148..789 | 17..658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:03 Download gff for
BS06140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8270325..8270866 | 117..658 | 100 | <- | Minus |
| X | 8271163..8271262 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:23 Download gff for
BS06140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8164358..8164899 | 117..658 | 100 | <- | Minus |
| arm_X | 8165196..8165295 | 17..116 | 100 | | Minus |
BS06140.pep Sequence
Translation from 16 to 657
> BS06140.pep
MADIRSSLKVLFQGETNLITCGSSNTYEEVISQAMTRFAIPETQRKALIL
TNGKDYVFEAHLLEYFLLLFPCPEITFHLRFDWSKMRRSLGQTESLKRKR
LVDLEQAEGQKEEDQEKEDPVPEYKPVPVYRMNCFLGSLPTAGAIPVHRQ
NCFLREQSQQQLDEISIPRLQEDDDQKEPPKKRQRVDVCSKPRRTASTSV
GPSPVPVMRSIRI*
BS06140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Corp-PB | 213 | CG10965-PB | 1..213 | 1..213 | 1106 | 100 | Plus |
| Corp-PA | 213 | CG10965-PA | 1..213 | 1..213 | 1106 | 100 | Plus |
