Clone Sequence Records
BS06141.3prime Sequence
880 bp (814 high quality bases) assembled on 2005-12-03
> BS06141.3prime
ATGGTCTAGAAAGCTTTCAGCCGTTGGAATCATTGTCTGAGGAGGAGTAA
TCCCCCACTAAGCTTATGGGTTTTTCGTTCGTGGCTGAAGATGTAGTTTC
TTCCAACTTTTTACGCCGTATGCCAAGATCCTGTACTTGGAGCTGGGTAT
TCAGAACCTTTTGTCGCTTGAGTCCACCAAATGTGGTGACTGTTGCTCCG
GGAAGCGCTGGACGCATAAGCAGCTCCAACCGCTGCTCGGATTCCCGTTC
CAGAGCTGACTTCGTCTGCAACTTCATCAGGGCTGCCATTTCGCGATCTT
GTGTGGTCTCCGGAAGGAGAGCAATGTCCAAGCTGCTCTTGGCCAACAAC
TGTCGATCCAGCTCCTGCTGACCATTGATCTCTTTCTTCTGCTGGCGAAA
CTCGGCGCGTAGGCGACTATTGGCCATATAGCTGTCATCCCAGACGCTCA
TGTTGCGCTCCACTAGTTTCTGGAGCACGGGCCTGGCATCTGCCCCTGCC
TTAGCATCCTTGGCTTGATGCTCCAACTTGTACATGGCATCGTCGAAGAG
ACGCTTTTGTACCTCCTTGGTTTCCGGTACAACTTGTTCGTTCTGCAAGG
GATCCCAGCGGTTCTCCTGCCGTCTAGCCCCCGAAAGTATAACATAGTCC
AAATTGCCGGGATCCGTCTGGATCTCAAAGTGGTTGTCGCACAAGTGGCA
CTTCATCCGGAACTTAAAAACCGGCGTAGTGTAGTACATGCCCACCTTGG
TCTTCTCCGCATTGTAGCGCACGCCCATGCCGATGTGGTTCTTGCATCCA
TCACACCAGATATTGTAGGGCATCTCAAAGCGGATGATGATGATTCCCAG
GTGAATCTTGCGGGCCCGTTCCCGCANGGC
BS06141.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15084-PA | 951 | CG15084-RA | 88..951 | 880..17 | 4301 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15084-RA | 1120 | CG15084-RA | 180..1043 | 880..17 | 4309 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18851023..18851886 | 880..17 | 4309 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:29:05 has no hits.
BS06141.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:15 Download gff for
BS06141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-PA | 88..951 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:18 Download gff for
BS06141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-PA | 88..951 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:00:52 Download gff for
BS06141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-RA | 180..1046 | 10..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:49:51 Download gff for
BS06141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-RA | 180..1046 | 10..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:49:51 Download gff for
BS06141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18851023..18851889 | 10..880 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:00:52 Download gff for
BS06141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14738528..14739394 | 10..880 | 99 | | Minus |
BS06141.5prime Sequence
939 bp (786 high quality bases) assembled on 2005-12-03
> BS06141.5prime
GAAGTTATCAGTCGACATGGGTGAACGCAAGGGACAGAACAAGTACTATC
CGCCCGACTATGATCCGAAGAAGGGCGGTCTCAACAAGTTCCAGGGAACC
CACGCCCTGCGGGAACGGGCCCGCAAGATTCACCTGGGAATCATCATCAT
CCGCTTTGAGATGCCCTACAATATCTGGTGTGATGGATGCAAGAACCACA
TCGGCATGGGCGTGCGCTACAATGCGGAGAAGACCAAGGTGGGCATGTAC
TACACTACGCCGGTTTTTAAGTTCCGGATGAAGTGCCACTTGTGCGACAA
CCACTTTGAGATCCAGACGGATCCCGGCAATTTGGACTATGTTATACTTT
CGGGGGCTAGACGGCAGGAGAACCGCTGGGATCCCTTGCAGAACGAACAA
GTTGTACCGGAAACCAAGGAGGTACAAAAGCGTCTCTTCGACGATGCCAT
GTACAAGTTGGAGCATCAAGCCAAGGATGCTAAGGCAGGGGCAGATGCCA
GGCCCGTGCTCCAGAAACTAGTGGAGCGCAACATGAGCGTCTGGGATGAC
AGCTATATGGCCAATAGTCGCCTACGCGCCGAGTTTCGCCAGCAGAAGAA
AGAGATCAATGGTCAGCAGGAGCTGGATCGACAGTTGTTGGCCAAGAGCA
GCTTGGACATTGCTCTCCTTCCGGAGACCACACAAGATCGCGAAATGGCA
GCCCTGATGAAGTTGCAGACGAAGTCAGCTCTGGAACGGGAATCCGAGCA
GCGGTTGGAGCTGCTTATGCGTCCAGCGCTTCCCGGAGCAACAGTCACCA
CATTTGGTGGACTCAAGCGACAAAAGGTTCTGAATACCCAGCTCCAAGTA
CAGGATCTTGGCATACGGCGTAAAAAGTTGGAAAGAAACTACATCTTCAG
CCACGAACGAAAAACCCATAAGCTTAGGGGGGGATTACT
BS06141.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15084-PA | 951 | CG15084-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
| CG15084-PA | 951 | CG15084-RA | 866..922 | 883..939 | 260 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15084-RA | 1120 | CG15084-RA | 93..1014 | 17..939 | 4575 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18850936..18851857 | 17..939 | 4550 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:47:33 has no hits.
BS06141.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:16 Download gff for
BS06141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-PA | 1..922 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:19 Download gff for
BS06141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-PA | 1..922 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:59:15 Download gff for
BS06141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-RA | 93..1014 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:36 Download gff for
BS06141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-RA | 93..1014 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:36 Download gff for
BS06141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18850936..18851857 | 17..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:59:15 Download gff for
BS06141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14738441..14739362 | 17..939 | 99 | | Plus |
BS06141.complete Sequence
983 bp (983 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635370
> BS06141.complete
GAAGTTATCAGTCGACATGGGTGAACGCAAGGGACAGAACAAGTACTATC
CGCCCGACTATGATCCGAAGAAGGGCGGTCTCAACAAGTTCCAGGGAACC
CACGCCCTGCGGGAACGGGCCCGCAAGATTCACCTGGGAATCATCATCAT
CCGCTTTGAGATGCCCTACAATATCTGGTGTGATGGATGCAAGAACCACA
TCGGCATGGGCGTGCGCTACAATGCGGAGAAGACCAAGGTGGGCATGTAC
TACACTACGCCGGTTTTTAAGTTCCGGATGAAGTGCCACTTGTGCGACAA
CCACTTTGAGATCCAGACGGATCCCGGCAATTTGGACTATGTTATACTTT
CGGGGGCTAGACGGCAGGAGAACCGCTGGGATCCCTTGCAGAACGAACAA
GTTGTACCGGAAACCAAGGAGGTACAAAAGCGTCTCTTCGACGATGCCAT
GTACAAGTTGGAGCATCAAGCCAAGGATGCTAAGGCAGGGGCAGATGCCA
GGCCCGTGCTCCAGAAACTAGTGGAGCGCAACATGAGCGTCTGGGATGAC
AGCTATATGGCCAATAGTCGCCTACGCGCCGAGTTTCGCCAGCAGAAGAA
AGAGATCAATGGTCAGCAGGAGCTGGATCGACAGTTGTTGGCCAAGAGCA
GCTTGGACATTGCTCTCCTTCCGGAGACCACACAAGATCGCGAAATGGCA
GCCCTGATGAAGTTGCAGACGAAGTCAGCTCTGGAACGGGAATCCGAGCA
GCGGTTGGAGCTGCTTATGCGTCCAGCGCTTCCCGGAGCAACAGTCACCA
CATTTGGTGGACTCAAGCGACAAAAGGTTCTGAATACCCAGCTCCAAGTA
CAGGATCTTGGCATACGGCGTAAAAAGTTGGAAGAAACTACATCTTCAGC
CACGAACGAAAAACCCATAAGCTTAGTGGGGGATTACTCCTCCTCAGACA
ATGATTCCAACGGCTGAAAGCTTTCTAGACCAT
BS06141.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15084-RA | 951 | CG15084-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15084-RA | 1120 | CG15084-RA | 93..1043 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18850936..18851886 | 17..967 | 4755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:03:30 has no hits.
BS06141.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:50 Download gff for
BS06141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-RA | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:37 Download gff for
BS06141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-RA | 76..1029 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:40 Download gff for
BS06141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-RA | 93..1042 | 17..966 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:51 Download gff for
BS06141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-RA | 76..1029 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:00 Download gff for
BS06141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15084-RA | 93..1042 | 17..966 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:00 Download gff for
BS06141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18850936..18851885 | 17..966 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:40 Download gff for
BS06141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14738441..14739390 | 17..966 | 100 | | Plus |
BS06141.pep Sequence
Translation from 16 to 966
> BS06141.pep
MGERKGQNKYYPPDYDPKKGGLNKFQGTHALRERARKIHLGIIIIRFEMP
YNIWCDGCKNHIGMGVRYNAEKTKVGMYYTTPVFKFRMKCHLCDNHFEIQ
TDPGNLDYVILSGARRQENRWDPLQNEQVVPETKEVQKRLFDDAMYKLEH
QAKDAKAGADARPVLQKLVERNMSVWDDSYMANSRLRAEFRQQKKEINGQ
QELDRQLLAKSSLDIALLPETTQDREMAALMKLQTKSALERESEQRLELL
MRPALPGATVTTFGGLKRQKVLNTQLQVQDLGIRRKKLEETTSSATNEKP
ISLVGDYSSSDNDSNG*
BS06141.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15084-PA | 316 | CG15084-PA | 1..316 | 1..316 | 1651 | 100 | Plus |
| CG8435-PA | 333 | CG8435-PA | 1..195 | 1..204 | 185 | 26.9 | Plus |
