Clone Sequence Records
BS06144.3prime Sequence
936 bp (794 high quality bases) assembled on 2005-12-03
> BS06144.3prime
ATGGTCTAGAAAGCTTTTACCTATGCAAACTTCCTTTAAAATCCGATAAT
TCTGCCATCTTGGCGAGTATCCAGGGCACATAGGTGGGTACATCCATGTA
GTAGGCCTTCTGACCAGCACCGCAGTTTTGGCTTCCAGTGCTGACCACAC
CAAATTGTACGGTTCGAGCCTTGCCAAACAACGTGGTCTTCCATATGAGC
GGTCCACCGGAGTCCCCAGTGCACGTGTCCACATAATCTCCATTGGCGCA
AAGGAAGGAAGTATCCCTGCCGTCGGTGCACTTCTCAGTGTTTATATGGA
CCTCCATTGTACTGTTGGCGAAGCGCCGACTTTCCGTTCTCCCCCAGCCC
ACAGCCATGTAGGATTGTCCCAGCTGCAAGGTAAACGCCAAGAGTTCATC
CGTCAGGGGTAGACATATGGGTCGTATGTGATCTTTAAAGACCACTTTCT
TGTTTAGTTTTATCAGAGCAATATCATACCCGGGATAGAAGAGGTTAAAC
TCCTCGTGAAGAATCCACTTGTCGATGGTAAACTCCTCCACGGGCAGTGC
GCAAACCCGTTGATAATTGTAGGTGACGCAGTCACTTGTGGAACTAATGT
CGAGCTCTCCCAGCCACACTCTTATCTCCTTAGATCGGGGACACATTTTG
AAGCAGTGCGCGGCAGTCAAAACAAAGAGTTCTGAGAGAAGAGAGCCTCC
ACAGCGGCACATCTCTATATCACCGGANATGTGGAGAAAAGCCATCCAAG
GCTGGGACAACAGCGAAGATTTCCTGCCGCCGGTGATCCGCCGTCGAAGC
CTTTGGGCGGGAATCAGATTCGATAGGACACCGCAATCCTGTTGTGTCAA
CTGTTCGTAAGCCAGAAGCTCGTGTGGTGTCCAATCTCCCCTCCGGCTTG
AGAGAAGGTGGACAGCTAAGGCAGAGAATGCCCCAA
BS06144.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-PA | 954 | CG1773-RA | 84..954 | 887..17 | 4336 | 99.8 | Minus |
CG30002-PA | 612 | CG30002-RA | 1..305 | 646..342 | 1100 | 94.4 | Minus |
CG30002-PA | 612 | CG30002-RA | 328..581 | 319..66 | 920 | 94.4 | Minus |
CG1773-PA | 954 | CG1773-RA | 33..66 | 936..903 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-RA | 1123 | CG1773-RA | 58..980 | 936..16 | 4539 | 99.6 | Minus |
CG30002-RB | 1572 | CG30002-RB | 56..959 | 936..36 | 3174 | 90.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9707019..9707437 | 434..16 | 2095 | 100 | Minus |
2R | 25286936 | 2R | 9705135..9705535 | 434..34 | 1480 | 91.3 | Minus |
2R | 25286936 | 2R | 9706324..9706583 | 936..679 | 1174 | 98.5 | Minus |
2R | 25286936 | 2R | 9706755..9706948 | 626..433 | 970 | 100 | Minus |
2R | 25286936 | 2R | 9704871..9705064 | 626..433 | 835 | 95.4 | Minus |
2R | 25286936 | 2R | 9704439..9704698 | 936..679 | 559 | 82.7 | Minus |
2R | 25286936 | 2R | 9704755..9704807 | 678..626 | 265 | 100 | Minus |
2R | 25286936 | 2R | 9706640..9706692 | 678..626 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:30:20 has no hits.
BS06144.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:17 Download gff for
BS06144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-PA | 35..954 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:20 Download gff for
BS06144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-PA | 35..954 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:38:04 Download gff for
BS06144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 60..986 | 8..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:49 Download gff for
BS06144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 60..986 | 8..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:49 Download gff for
BS06144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9706640..9706691 | 627..678 | 100 | -> | Minus |
2R | 9706755..9706948 | 433..626 | 100 | -> | Minus |
2R | 9706326..9706583 | 679..934 | 98 | -> | Minus |
2R | 9707021..9707443 | 8..432 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:38:04 Download gff for
BS06144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5593831..5594088 | 679..934 | 98 | -> | Minus |
arm_2R | 5594145..5594196 | 627..678 | 100 | -> | Minus |
arm_2R | 5594260..5594453 | 433..626 | 100 | -> | Minus |
arm_2R | 5594526..5594948 | 8..432 | 99 | | Minus |
BS06144.5prime Sequence
852 bp (766 high quality bases) assembled on 2005-12-03
> BS06144.5prime
GAAGTTATCAGTCGACATGAACAGTCCTCTCGGGATCACTGCCCTAATTT
GGGGCATTCTCTGCCTTAGCTGTCCACCTTCTTCTCAAGCCGGAAGGGAA
GATTGGACACCACACGAGCTTCTGGCTTACGAACAGTTGACACAACAGGA
TTGCGGTGTCCTATCGAATCTGATTCCCGCCCAAAGGCTTCGACGGCGGA
TCACCGGCGGCAGGAAATCTTCGCTGTTGTCCCAGCCTTGGATGGCTTTT
CTCCACATTTCCGGTGATATAGAGATGTGCCGCTGTGGAGGCTCTCTTCT
CTCAGAACTCTTTGTTTTGACTGCCGCGCACTGCTTCAAAATGTGTCCCC
GATCTAAGGAGATAAGAGTGTGGCTGGGAGAGCTCGACATTAGTTCCACA
AGTGACTGCGTCACCTACAATTATCAACGGGTTTGCGCACTGCCCGTGGA
GGAGTTTACCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTCT
ATCCCGGGTATGATATTGCTCTGATAAAACTAAACAAGAAAGTGGTCTTT
AAAGATCACATACGACCCATATGTCTACCCCTGACGGATGAACTCTTGGC
GTTTACCTTGCAGCTGGGACAATCCTACATGGCTGTGGGCTGGGGGAGAA
CGGAAAGTCGGCGCTTCGCCAACAGTACAATGGAGGTCCATATAAACACT
GAGAAGTGCACCGACGGCAGGGATACTTCCTTCCTTTGCGCCAATGGAGA
TTATGTGGACACGTGCACTGGGGACTCCGGTGGACCGCTCATATGGAAGA
CCACGTTGTTTGGCAAGGCTCGAACCGTACAATTTGGTGTGGTCAGCACT
GG
BS06144.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-PA | 954 | CG1773-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
CG30002-PA | 612 | CG30002-RA | 1..305 | 341..645 | 1100 | 94.4 | Plus |
CG30002-PA | 612 | CG30002-RA | 328..512 | 668..852 | 625 | 93.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-RA | 1123 | CG1773-RA | 25..861 | 16..852 | 4185 | 100 | Plus |
CG30002-RB | 1572 | CG30002-RB | 23..859 | 16..852 | 2955 | 90.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9707019..9707318 | 553..852 | 1500 | 100 | Plus |
2R | 25286936 | 2R | 9706291..9706583 | 16..308 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 9705135..9705434 | 553..852 | 1095 | 91 | Plus |
2R | 25286936 | 2R | 9706755..9706948 | 361..554 | 970 | 100 | Plus |
2R | 25286936 | 2R | 9704871..9705064 | 361..554 | 835 | 95.4 | Plus |
2R | 25286936 | 2R | 9704406..9704698 | 16..308 | 775 | 84.3 | Plus |
2R | 25286936 | 2R | 9704755..9704807 | 309..361 | 265 | 100 | Plus |
2R | 25286936 | 2R | 9706640..9706692 | 309..361 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:15:53 has no hits.
BS06144.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:18 Download gff for
BS06144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-PA | 1..836 | 17..852 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:22 Download gff for
BS06144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-PA | 1..836 | 17..852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:30 Download gff for
BS06144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 25..861 | 16..852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:14 Download gff for
BS06144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 25..861 | 16..852 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:14 Download gff for
BS06144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9706291..9706583 | 16..308 | 100 | -> | Plus |
2R | 9706640..9706691 | 309..360 | 100 | -> | Plus |
2R | 9706755..9706948 | 361..554 | 100 | -> | Plus |
2R | 9707021..9707318 | 555..852 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:30 Download gff for
BS06144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5593796..5594088 | 16..308 | 100 | -> | Plus |
arm_2R | 5594145..5594196 | 309..360 | 100 | -> | Plus |
arm_2R | 5594260..5594453 | 361..554 | 100 | -> | Plus |
arm_2R | 5594526..5594823 | 555..852 | 100 | | Plus |
BS06144.complete Sequence
986 bp (986 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635371
> BS06144.complete
GAAGTTATCAGTCGACATGAACAGTCCTCTCGGGATCACTGCCCTAATTT
GGGGCATTCTCTGCCTTAGCTGTCCACCTTCTTCTCAAGCCGGAAGGGAA
GATTGGACACCACACGAGCTTCTGGCTTACGAACAGTTGACACAACAGGA
TTGCGGTGTCCTATCGAATCTGATTCCCGCCCAAAGGCTTCGACGGCGGA
TCACCGGCGGCAGGAAATCTTCGCTGTTGTCCCAGCCTTGGATGGCTTTT
CTCCACATTTCCGGTGATATAGAGATGTGCCGCTGTGGAGGCTCTCTTCT
CTCAGAACTCTTTGTTTTGACTGCCGCGCACTGCTTCAAAATGTGTCCCC
GATCTAAGGAGATAAGAGTGTGGCTGGGAGAGCTCGACATTAGTTCCACA
AGTGACTGCGTCACCTACAATTATCAACGGGTTTGCGCACTGCCCGTGGA
GGAGTTTACCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTCT
ATCCCGGGTATGATATTGCTCTGATAAAACTAAACAAGAAAGTGGTCTTT
AAAGATCACATACGACCCATATGTCTACCCCTGACGGATGAACTCTTGGC
GTTTACCTTGCAGCTGGGACAATCCTACATGGCTGTGGGCTGGGGGAGAA
CGGAAAGTCGGCGCTTCGCCAACAGTACAATGGAGGTCCATATAAACACT
GAGAAGTGCACCGACGGCAGGGATACTTCCTTCCTTTGCGCCAATGGAGA
TTATGTGGACACGTGCACTGGGGACTCCGGTGGACCGCTCATATGGAAGA
CCACGTTGTTTGGCAAGGCTCGAACCGTACAATTTGGTGTGGTCAGCACT
GGAAGCCAAAACTGCGGTGCTGGTCAGAAGGCCTACTACATGGATGTACC
CACCTATGTGCCCTGGATACTCGCCAAGATGGCAGAATTATCGGATTTTA
AAGGAAGTTTGCATAGGTAAAAGCTTTCTAGACCAT
BS06144.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-RA | 954 | CG1773-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
CG30002-RB | 936 | CG30002-PB | 1..930 | 17..946 | 3330 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-RA | 1123 | CG1773-RA | 25..980 | 16..971 | 4780 | 100 | Plus |
CG30002-RB | 1572 | CG30002-RB | 23..960 | 16..953 | 3340 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9707019..9707437 | 553..971 | 2095 | 100 | Plus |
2R | 25286936 | 2R | 9705135..9705535 | 553..953 | 1480 | 91.3 | Plus |
2R | 25286936 | 2R | 9706291..9706583 | 16..308 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 9706755..9706948 | 361..554 | 970 | 100 | Plus |
2R | 25286936 | 2R | 9704871..9705064 | 361..554 | 835 | 95.4 | Plus |
2R | 25286936 | 2R | 9704406..9704698 | 16..308 | 775 | 84.3 | Plus |
2R | 25286936 | 2R | 9704755..9704807 | 309..361 | 265 | 100 | Plus |
2R | 25286936 | 2R | 9706640..9706692 | 309..361 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:00:28 has no hits.
BS06144.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:52 Download gff for
BS06144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:39 Download gff for
BS06144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 2..969 | 12..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:17 Download gff for
BS06144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 26..977 | 17..968 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:52 Download gff for
BS06144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 2..969 | 12..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:16 Download gff for
BS06144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 26..977 | 17..968 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:16 Download gff for
BS06144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9706292..9706583 | 17..308 | 100 | -> | Plus |
2R | 9706640..9706691 | 309..360 | 100 | -> | Plus |
2R | 9706755..9706948 | 361..554 | 100 | -> | Plus |
2R | 9707021..9707434 | 555..968 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:17 Download gff for
BS06144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5593797..5594088 | 17..308 | 100 | -> | Plus |
arm_2R | 5594145..5594196 | 309..360 | 100 | -> | Plus |
arm_2R | 5594260..5594453 | 361..554 | 100 | -> | Plus |
arm_2R | 5594526..5594939 | 555..968 | 100 | | Plus |
BS06144.pep Sequence
Translation from 16 to 969
> BS06144.pep
MNSPLGITALIWGILCLSCPPSSQAGREDWTPHELLAYEQLTQQDCGVLS
NLIPAQRLRRRITGGRKSSLLSQPWMAFLHISGDIEMCRCGGSLLSELFV
LTAAHCFKMCPRSKEIRVWLGELDISSTSDCVTYNYQRVCALPVEEFTID
KWILHEEFNLFYPGYDIALIKLNKKVVFKDHIRPICLPLTDELLAFTLQL
GQSYMAVGWGRTESRRFANSTMEVHINTEKCTDGRDTSFLCANGDYVDTC
TGDSGGPLIWKTTLFGKARTVQFGVVSTGSQNCGAGQKAYYMDVPTYVPW
ILAKMAELSDFKGSLHR*
BS06144.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-PA | 317 | CG1773-PA | 1..317 | 1..317 | 1709 | 100 | Plus |
CG30002-PB | 311 | CG30002-PB | 1..310 | 1..310 | 1475 | 86.5 | Plus |
grass-PA | 335 | CG5896-PA | 73..331 | 58..306 | 386 | 37.6 | Plus |
grass-PB | 377 | CG5896-PB | 115..373 | 58..306 | 386 | 37.6 | Plus |
CG30090-PA | 291 | CG30090-PA | 8..273 | 7..301 | 364 | 35.3 | Plus |