Clone BS06144 Report

Search the DGRC for BS06144

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG1773-RA
Protein status:BS06144.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06144.3prime Sequence

936 bp (794 high quality bases) assembled on 2005-12-03

> BS06144.3prime
ATGGTCTAGAAAGCTTTTACCTATGCAAACTTCCTTTAAAATCCGATAAT
TCTGCCATCTTGGCGAGTATCCAGGGCACATAGGTGGGTACATCCATGTA
GTAGGCCTTCTGACCAGCACCGCAGTTTTGGCTTCCAGTGCTGACCACAC
CAAATTGTACGGTTCGAGCCTTGCCAAACAACGTGGTCTTCCATATGAGC
GGTCCACCGGAGTCCCCAGTGCACGTGTCCACATAATCTCCATTGGCGCA
AAGGAAGGAAGTATCCCTGCCGTCGGTGCACTTCTCAGTGTTTATATGGA
CCTCCATTGTACTGTTGGCGAAGCGCCGACTTTCCGTTCTCCCCCAGCCC
ACAGCCATGTAGGATTGTCCCAGCTGCAAGGTAAACGCCAAGAGTTCATC
CGTCAGGGGTAGACATATGGGTCGTATGTGATCTTTAAAGACCACTTTCT
TGTTTAGTTTTATCAGAGCAATATCATACCCGGGATAGAAGAGGTTAAAC
TCCTCGTGAAGAATCCACTTGTCGATGGTAAACTCCTCCACGGGCAGTGC
GCAAACCCGTTGATAATTGTAGGTGACGCAGTCACTTGTGGAACTAATGT
CGAGCTCTCCCAGCCACACTCTTATCTCCTTAGATCGGGGACACATTTTG
AAGCAGTGCGCGGCAGTCAAAACAAAGAGTTCTGAGAGAAGAGAGCCTCC
ACAGCGGCACATCTCTATATCACCGGANATGTGGAGAAAAGCCATCCAAG
GCTGGGACAACAGCGAAGATTTCCTGCCGCCGGTGATCCGCCGTCGAAGC
CTTTGGGCGGGAATCAGATTCGATAGGACACCGCAATCCTGTTGTGTCAA
CTGTTCGTAAGCCAGAAGCTCGTGTGGTGTCCAATCTCCCCTCCGGCTTG
AGAGAAGGTGGACAGCTAAGGCAGAGAATGCCCCAA

BS06144.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-PA 954 CG1773-RA 84..954 887..17 4336 99.8 Minus
CG30002-PA 612 CG30002-RA 1..305 646..342 1100 94.4 Minus
CG30002-PA 612 CG30002-RA 328..581 319..66 920 94.4 Minus
CG1773-PA 954 CG1773-RA 33..66 936..903 170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-RA 1123 CG1773-RA 58..980 936..16 4539 99.6 Minus
CG30002-RB 1572 CG30002-RB 56..959 936..36 3174 90.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9707019..9707437 434..16 2095 100 Minus
2R 25286936 2R 9705135..9705535 434..34 1480 91.3 Minus
2R 25286936 2R 9706324..9706583 936..679 1174 98.5 Minus
2R 25286936 2R 9706755..9706948 626..433 970 100 Minus
2R 25286936 2R 9704871..9705064 626..433 835 95.4 Minus
2R 25286936 2R 9704439..9704698 936..679 559 82.7 Minus
2R 25286936 2R 9704755..9704807 678..626 265 100 Minus
2R 25286936 2R 9706640..9706692 678..626 265 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:30:20 has no hits.

BS06144.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:17 Download gff for BS06144.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-PA 35..954 17..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:20 Download gff for BS06144.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-PA 35..954 17..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:38:04 Download gff for BS06144.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 60..986 8..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:49 Download gff for BS06144.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 60..986 8..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:49 Download gff for BS06144.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9706640..9706691 627..678 100 -> Minus
2R 9706755..9706948 433..626 100 -> Minus
2R 9706326..9706583 679..934 98 -> Minus
2R 9707021..9707443 8..432 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:38:04 Download gff for BS06144.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5593831..5594088 679..934 98 -> Minus
arm_2R 5594145..5594196 627..678 100 -> Minus
arm_2R 5594260..5594453 433..626 100 -> Minus
arm_2R 5594526..5594948 8..432 99   Minus

BS06144.5prime Sequence

852 bp (766 high quality bases) assembled on 2005-12-03

> BS06144.5prime
GAAGTTATCAGTCGACATGAACAGTCCTCTCGGGATCACTGCCCTAATTT
GGGGCATTCTCTGCCTTAGCTGTCCACCTTCTTCTCAAGCCGGAAGGGAA
GATTGGACACCACACGAGCTTCTGGCTTACGAACAGTTGACACAACAGGA
TTGCGGTGTCCTATCGAATCTGATTCCCGCCCAAAGGCTTCGACGGCGGA
TCACCGGCGGCAGGAAATCTTCGCTGTTGTCCCAGCCTTGGATGGCTTTT
CTCCACATTTCCGGTGATATAGAGATGTGCCGCTGTGGAGGCTCTCTTCT
CTCAGAACTCTTTGTTTTGACTGCCGCGCACTGCTTCAAAATGTGTCCCC
GATCTAAGGAGATAAGAGTGTGGCTGGGAGAGCTCGACATTAGTTCCACA
AGTGACTGCGTCACCTACAATTATCAACGGGTTTGCGCACTGCCCGTGGA
GGAGTTTACCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTCT
ATCCCGGGTATGATATTGCTCTGATAAAACTAAACAAGAAAGTGGTCTTT
AAAGATCACATACGACCCATATGTCTACCCCTGACGGATGAACTCTTGGC
GTTTACCTTGCAGCTGGGACAATCCTACATGGCTGTGGGCTGGGGGAGAA
CGGAAAGTCGGCGCTTCGCCAACAGTACAATGGAGGTCCATATAAACACT
GAGAAGTGCACCGACGGCAGGGATACTTCCTTCCTTTGCGCCAATGGAGA
TTATGTGGACACGTGCACTGGGGACTCCGGTGGACCGCTCATATGGAAGA
CCACGTTGTTTGGCAAGGCTCGAACCGTACAATTTGGTGTGGTCAGCACT
GG

BS06144.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-PA 954 CG1773-RA 1..836 17..852 4180 100 Plus
CG30002-PA 612 CG30002-RA 1..305 341..645 1100 94.4 Plus
CG30002-PA 612 CG30002-RA 328..512 668..852 625 93.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-RA 1123 CG1773-RA 25..861 16..852 4185 100 Plus
CG30002-RB 1572 CG30002-RB 23..859 16..852 2955 90.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9707019..9707318 553..852 1500 100 Plus
2R 25286936 2R 9706291..9706583 16..308 1465 100 Plus
2R 25286936 2R 9705135..9705434 553..852 1095 91 Plus
2R 25286936 2R 9706755..9706948 361..554 970 100 Plus
2R 25286936 2R 9704871..9705064 361..554 835 95.4 Plus
2R 25286936 2R 9704406..9704698 16..308 775 84.3 Plus
2R 25286936 2R 9704755..9704807 309..361 265 100 Plus
2R 25286936 2R 9706640..9706692 309..361 265 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:15:53 has no hits.

BS06144.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:18 Download gff for BS06144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-PA 1..836 17..852 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:22 Download gff for BS06144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-PA 1..836 17..852 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:30 Download gff for BS06144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 25..861 16..852 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:14 Download gff for BS06144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 25..861 16..852 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:14 Download gff for BS06144.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9706291..9706583 16..308 100 -> Plus
2R 9706640..9706691 309..360 100 -> Plus
2R 9706755..9706948 361..554 100 -> Plus
2R 9707021..9707318 555..852 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:30 Download gff for BS06144.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5593796..5594088 16..308 100 -> Plus
arm_2R 5594145..5594196 309..360 100 -> Plus
arm_2R 5594260..5594453 361..554 100 -> Plus
arm_2R 5594526..5594823 555..852 100   Plus

BS06144.complete Sequence

986 bp (986 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635371

> BS06144.complete
GAAGTTATCAGTCGACATGAACAGTCCTCTCGGGATCACTGCCCTAATTT
GGGGCATTCTCTGCCTTAGCTGTCCACCTTCTTCTCAAGCCGGAAGGGAA
GATTGGACACCACACGAGCTTCTGGCTTACGAACAGTTGACACAACAGGA
TTGCGGTGTCCTATCGAATCTGATTCCCGCCCAAAGGCTTCGACGGCGGA
TCACCGGCGGCAGGAAATCTTCGCTGTTGTCCCAGCCTTGGATGGCTTTT
CTCCACATTTCCGGTGATATAGAGATGTGCCGCTGTGGAGGCTCTCTTCT
CTCAGAACTCTTTGTTTTGACTGCCGCGCACTGCTTCAAAATGTGTCCCC
GATCTAAGGAGATAAGAGTGTGGCTGGGAGAGCTCGACATTAGTTCCACA
AGTGACTGCGTCACCTACAATTATCAACGGGTTTGCGCACTGCCCGTGGA
GGAGTTTACCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTCT
ATCCCGGGTATGATATTGCTCTGATAAAACTAAACAAGAAAGTGGTCTTT
AAAGATCACATACGACCCATATGTCTACCCCTGACGGATGAACTCTTGGC
GTTTACCTTGCAGCTGGGACAATCCTACATGGCTGTGGGCTGGGGGAGAA
CGGAAAGTCGGCGCTTCGCCAACAGTACAATGGAGGTCCATATAAACACT
GAGAAGTGCACCGACGGCAGGGATACTTCCTTCCTTTGCGCCAATGGAGA
TTATGTGGACACGTGCACTGGGGACTCCGGTGGACCGCTCATATGGAAGA
CCACGTTGTTTGGCAAGGCTCGAACCGTACAATTTGGTGTGGTCAGCACT
GGAAGCCAAAACTGCGGTGCTGGTCAGAAGGCCTACTACATGGATGTACC
CACCTATGTGCCCTGGATACTCGCCAAGATGGCAGAATTATCGGATTTTA
AAGGAAGTTTGCATAGGTAAAAGCTTTCTAGACCAT

BS06144.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-RA 954 CG1773-PA 1..954 17..970 4770 100 Plus
CG30002-RB 936 CG30002-PB 1..930 17..946 3330 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-RA 1123 CG1773-RA 25..980 16..971 4780 100 Plus
CG30002-RB 1572 CG30002-RB 23..960 16..953 3340 90.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9707019..9707437 553..971 2095 100 Plus
2R 25286936 2R 9705135..9705535 553..953 1480 91.3 Plus
2R 25286936 2R 9706291..9706583 16..308 1465 100 Plus
2R 25286936 2R 9706755..9706948 361..554 970 100 Plus
2R 25286936 2R 9704871..9705064 361..554 835 95.4 Plus
2R 25286936 2R 9704406..9704698 16..308 775 84.3 Plus
2R 25286936 2R 9704755..9704807 309..361 265 100 Plus
2R 25286936 2R 9706640..9706692 309..361 265 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:00:28 has no hits.

BS06144.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:52 Download gff for BS06144.complete
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 1..954 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:39 Download gff for BS06144.complete
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 2..969 12..979 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:17 Download gff for BS06144.complete
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 26..977 17..968 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:52 Download gff for BS06144.complete
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 2..969 12..979 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:16 Download gff for BS06144.complete
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 26..977 17..968 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:16 Download gff for BS06144.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9706292..9706583 17..308 100 -> Plus
2R 9706640..9706691 309..360 100 -> Plus
2R 9706755..9706948 361..554 100 -> Plus
2R 9707021..9707434 555..968 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:17 Download gff for BS06144.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5593797..5594088 17..308 100 -> Plus
arm_2R 5594145..5594196 309..360 100 -> Plus
arm_2R 5594260..5594453 361..554 100 -> Plus
arm_2R 5594526..5594939 555..968 100   Plus

BS06144.pep Sequence

Translation from 16 to 969

> BS06144.pep
MNSPLGITALIWGILCLSCPPSSQAGREDWTPHELLAYEQLTQQDCGVLS
NLIPAQRLRRRITGGRKSSLLSQPWMAFLHISGDIEMCRCGGSLLSELFV
LTAAHCFKMCPRSKEIRVWLGELDISSTSDCVTYNYQRVCALPVEEFTID
KWILHEEFNLFYPGYDIALIKLNKKVVFKDHIRPICLPLTDELLAFTLQL
GQSYMAVGWGRTESRRFANSTMEVHINTEKCTDGRDTSFLCANGDYVDTC
TGDSGGPLIWKTTLFGKARTVQFGVVSTGSQNCGAGQKAYYMDVPTYVPW
ILAKMAELSDFKGSLHR*

BS06144.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-PA 317 CG1773-PA 1..317 1..317 1709 100 Plus
CG30002-PB 311 CG30002-PB 1..310 1..310 1475 86.5 Plus
grass-PA 335 CG5896-PA 73..331 58..306 386 37.6 Plus
grass-PB 377 CG5896-PB 115..373 58..306 386 37.6 Plus
CG30090-PA 291 CG30090-PA 8..273 7..301 364 35.3 Plus